prot_H-elongata_contig71530.14821.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig71530.14821.1
Unique Nameprot_H-elongata_contig71530.14821.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length46
Homology
BLAST of mRNA_H-elongata_contig71530.14821.1 vs. uniprot
Match: D8LJJ0_ECTSI (MMS19 nucleotide excision repair protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJJ0_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 1.010e-12
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 0
Query:    2 EVQVRERATLLLAELLARLPELPLAPSSASRFAEFFSSRLADYPS 46
            + +VRERATLLLAELLARLP LPLA +SA+RFA FFSSRL DYPS
Sbjct:   68 DTKVRERATLLLAELLARLPTLPLAAASAARFAGFFSSRLGDYPS 112          
BLAST of mRNA_H-elongata_contig71530.14821.1 vs. uniprot
Match: A0A6H5KCY0_9PHAE (MMS19 nucleotide excision repair protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCY0_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 6.570e-12
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 0
Query:    4 QVRERATLLLAELLARLPELPLAPSSASRFAEFFSSRLADYPS 46
            +VRERATLLLAELL RLP LPLA +SA+RFA FFSSRL DYPS
Sbjct:   66 KVRERATLLLAELLVRLPTLPLAAASAARFAGFFSSRLGDYPS 108          
BLAST of mRNA_H-elongata_contig71530.14821.1 vs. uniprot
Match: A0A3R7JFL1_9STRA (MMS19 nucleotide excision repair protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JFL1_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.630e-8
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 0
Query:    1 GEVQVRERATLLLAELLARLPELPLAPSSASRFAEFFSSRLADYPS 46
            G+ +VR RATLLLAE+L RLPEL LAPS+      FF+ RLAD+PS
Sbjct:  426 GDDKVRSRATLLLAEVLTRLPELQLAPSAVQLLMTFFADRLADFPS 471          
BLAST of mRNA_H-elongata_contig71530.14821.1 vs. uniprot
Match: A0A421GLT5_9STRA (MMS19 nucleotide excision repair protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GLT5_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.630e-8
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 0
Query:    1 GEVQVRERATLLLAELLARLPELPLAPSSASRFAEFFSSRLADYPS 46
            G+ +VR RATLLLAE+L RLPEL LAPS+      FF+ RLAD+PS
Sbjct:  427 GDDKVRSRATLLLAEVLTRLPELQLAPSAVQLLMTFFADRLADFPS 472          
BLAST of mRNA_H-elongata_contig71530.14821.1 vs. uniprot
Match: A0A2P4Y010_9STRA (MMS19 nucleotide excision repair protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y010_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 5.700e-8
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 0
Query:    1 GEVQVRERATLLLAELLARLPELPLAPSSASRFAEFFSSRLADYPS 46
            G+ +VR RATLLLAE+L RLPEL L PS+      FF+ RLAD+PS
Sbjct:  465 GDDKVRSRATLLLAEVLTRLPELQLTPSAVQLLLTFFADRLADFPS 510          
BLAST of mRNA_H-elongata_contig71530.14821.1 vs. uniprot
Match: D0NXI8_PHYIT (MMS19 nucleotide excision repair protein n=10 Tax=Phytophthora TaxID=4783 RepID=D0NXI8_PHYIT)

HSP 1 Score: 56.2 bits (134), Expect = 5.700e-8
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 0
Query:    1 GEVQVRERATLLLAELLARLPELPLAPSSASRFAEFFSSRLADYPS 46
            G+ +VR RATLLLAE+L RLPEL L PS+      FF+ RLAD+PS
Sbjct:   84 GDDKVRSRATLLLAEVLTRLPELQLTPSAVQLLMTFFADRLADFPS 129          
BLAST of mRNA_H-elongata_contig71530.14821.1 vs. uniprot
Match: H3GFF5_PHYRM (MMS19 nucleotide excision repair protein n=22 Tax=Phytophthora TaxID=4783 RepID=H3GFF5_PHYRM)

HSP 1 Score: 56.2 bits (134), Expect = 5.700e-8
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 0
Query:    1 GEVQVRERATLLLAELLARLPELPLAPSSASRFAEFFSSRLADYPS 46
            G+ +VR RATLLLAE+L RLPEL L PS+      FF+ RLAD+PS
Sbjct:   56 GDDKVRSRATLLLAEVLTRLPELQLTPSAVQLLLTFFADRLADFPS 101          
BLAST of mRNA_H-elongata_contig71530.14821.1 vs. uniprot
Match: A0A0N7L5V8_PLAHL (MMS19 nucleotide excision repair protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L5V8_PLAHL)

HSP 1 Score: 56.2 bits (134), Expect = 5.700e-8
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 0
Query:    1 GEVQVRERATLLLAELLARLPELPLAPSSASRFAEFFSSRLADYPS 46
            G+ +VR RATLLLAE+L RLPEL L PS+      FF+ RLAD+PS
Sbjct:   56 GDDKVRSRATLLLAEVLTRLPELQLMPSAVQLLLNFFADRLADFPS 101          
BLAST of mRNA_H-elongata_contig71530.14821.1 vs. uniprot
Match: A0A662XHF0_9STRA (MMS19 nucleotide excision repair protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XHF0_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 5.700e-8
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 0
Query:    1 GEVQVRERATLLLAELLARLPELPLAPSSASRFAEFFSSRLADYPS 46
            G+ +VR RATLLLAE+L RLP+L LAPS+      FF+ RLAD+PS
Sbjct:   56 GDDKVRARATLLLAEVLTRLPDLQLAPSAVQLLLTFFADRLADFPS 101          
BLAST of mRNA_H-elongata_contig71530.14821.1 vs. uniprot
Match: K3WEQ0_GLOUD (MMS19 nucleotide excision repair protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WEQ0_GLOUD)

HSP 1 Score: 54.3 bits (129), Expect = 2.730e-7
Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 0
Query:    4 QVRERATLLLAELLARLPELPLAPSSASRFAEFFSSRLADYPS 46
            +VR RA  LLAE+L+RLPELPL P++     +FF+ RLADYPS
Sbjct:   59 KVRARAMQLLAEVLSRLPELPLTPNAVQLLVDFFADRLADYPS 101          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71530.14821.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LJJ0_ECTSI1.010e-1280.00MMS19 nucleotide excision repair protein n=1 Tax=E... [more]
A0A6H5KCY0_9PHAE6.570e-1281.40MMS19 nucleotide excision repair protein (Fragment... [more]
A0A3R7JFL1_9STRA1.630e-863.04MMS19 nucleotide excision repair protein n=1 Tax=P... [more]
A0A421GLT5_9STRA1.630e-863.04MMS19 nucleotide excision repair protein n=3 Tax=P... [more]
A0A2P4Y010_9STRA5.700e-860.87MMS19 nucleotide excision repair protein (Fragment... [more]
D0NXI8_PHYIT5.700e-860.87MMS19 nucleotide excision repair protein n=10 Tax=... [more]
H3GFF5_PHYRM5.700e-860.87MMS19 nucleotide excision repair protein n=22 Tax=... [more]
A0A0N7L5V8_PLAHL5.700e-860.87MMS19 nucleotide excision repair protein n=1 Tax=P... [more]
A0A662XHF0_9STRA5.700e-860.87MMS19 nucleotide excision repair protein n=2 Tax=N... [more]
K3WEQ0_GLOUD2.730e-760.47MMS19 nucleotide excision repair protein n=1 Tax=G... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029240MMS19, N-terminalPFAMPF14500MMS19_Ncoord: 3..45
e-value: 3.2E-7
score: 30.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71530contigH-elongata_contig71530:2526..2663 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71530.14821.1mRNA_H-elongata_contig71530.14821.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig71530 2526..2663 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig71530.14821.1 ID=prot_H-elongata_contig71530.14821.1|Name=mRNA_H-elongata_contig71530.14821.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
GEVQVRERATLLLAELLARLPELPLAPSSASRFAEFFSSRLADYPS
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029240MMS19_N