mRNA_H-elongata_contig71530.14821.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71530.14821.1
Unique NamemRNA_H-elongata_contig71530.14821.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig71530.14821.1 vs. uniprot
Match: D8LJJ0_ECTSI (MMS19 nucleotide excision repair protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJJ0_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 1.010e-12
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    4 EVQVRERATLLLAELLARLPELPLAPSSASRFAEFFSSRLADYPS 138
            + +VRERATLLLAELLARLP LPLA +SA+RFA FFSSRL DYPS
Sbjct:   68 DTKVRERATLLLAELLARLPTLPLAAASAARFAGFFSSRLGDYPS 112
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BLAST of mRNA_H-elongata_contig71530.14821.1 vs. uniprot
Match: A0A6H5KCY0_9PHAE (MMS19 nucleotide excision repair protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCY0_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 6.570e-12
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:   10 QVRERATLLLAELLARLPELPLAPSSASRFAEFFSSRLADYPS 138
            +VRERATLLLAELL RLP LPLA +SA+RFA FFSSRL DYPS
Sbjct:   66 KVRERATLLLAELLVRLPTLPLAAASAARFAGFFSSRLGDYPS 108
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BLAST of mRNA_H-elongata_contig71530.14821.1 vs. uniprot
Match: A0A3R7JFL1_9STRA (MMS19 nucleotide excision repair protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JFL1_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.630e-8
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 GEVQVRERATLLLAELLARLPELPLAPSSASRFAEFFSSRLADYPS 138
            G+ +VR RATLLLAE+L RLPEL LAPS+      FF+ RLAD+PS
Sbjct:  426 GDDKVRSRATLLLAEVLTRLPELQLAPSAVQLLMTFFADRLADFPS 471
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BLAST of mRNA_H-elongata_contig71530.14821.1 vs. uniprot
Match: A0A421GLT5_9STRA (MMS19 nucleotide excision repair protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GLT5_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.630e-8
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 GEVQVRERATLLLAELLARLPELPLAPSSASRFAEFFSSRLADYPS 138
            G+ +VR RATLLLAE+L RLPEL LAPS+      FF+ RLAD+PS
Sbjct:  427 GDDKVRSRATLLLAEVLTRLPELQLAPSAVQLLMTFFADRLADFPS 472
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BLAST of mRNA_H-elongata_contig71530.14821.1 vs. uniprot
Match: A0A2P4Y010_9STRA (MMS19 nucleotide excision repair protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y010_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 5.700e-8
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 GEVQVRERATLLLAELLARLPELPLAPSSASRFAEFFSSRLADYPS 138
            G+ +VR RATLLLAE+L RLPEL L PS+      FF+ RLAD+PS
Sbjct:  465 GDDKVRSRATLLLAEVLTRLPELQLTPSAVQLLLTFFADRLADFPS 510
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BLAST of mRNA_H-elongata_contig71530.14821.1 vs. uniprot
Match: D0NXI8_PHYIT (MMS19 nucleotide excision repair protein n=10 Tax=Phytophthora TaxID=4783 RepID=D0NXI8_PHYIT)

HSP 1 Score: 56.2 bits (134), Expect = 5.700e-8
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 GEVQVRERATLLLAELLARLPELPLAPSSASRFAEFFSSRLADYPS 138
            G+ +VR RATLLLAE+L RLPEL L PS+      FF+ RLAD+PS
Sbjct:   84 GDDKVRSRATLLLAEVLTRLPELQLTPSAVQLLMTFFADRLADFPS 129
[Close]
BLAST of mRNA_H-elongata_contig71530.14821.1 vs. uniprot
Match: H3GFF5_PHYRM (MMS19 nucleotide excision repair protein n=22 Tax=Phytophthora TaxID=4783 RepID=H3GFF5_PHYRM)

HSP 1 Score: 56.2 bits (134), Expect = 5.700e-8
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 GEVQVRERATLLLAELLARLPELPLAPSSASRFAEFFSSRLADYPS 138
            G+ +VR RATLLLAE+L RLPEL L PS+      FF+ RLAD+PS
Sbjct:   56 GDDKVRSRATLLLAEVLTRLPELQLTPSAVQLLLTFFADRLADFPS 101
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BLAST of mRNA_H-elongata_contig71530.14821.1 vs. uniprot
Match: A0A0N7L5V8_PLAHL (MMS19 nucleotide excision repair protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L5V8_PLAHL)

HSP 1 Score: 56.2 bits (134), Expect = 5.700e-8
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 GEVQVRERATLLLAELLARLPELPLAPSSASRFAEFFSSRLADYPS 138
            G+ +VR RATLLLAE+L RLPEL L PS+      FF+ RLAD+PS
Sbjct:   56 GDDKVRSRATLLLAEVLTRLPELQLMPSAVQLLLNFFADRLADFPS 101
[Close]
BLAST of mRNA_H-elongata_contig71530.14821.1 vs. uniprot
Match: A0A662XHF0_9STRA (MMS19 nucleotide excision repair protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XHF0_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 5.700e-8
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 GEVQVRERATLLLAELLARLPELPLAPSSASRFAEFFSSRLADYPS 138
            G+ +VR RATLLLAE+L RLP+L LAPS+      FF+ RLAD+PS
Sbjct:   56 GDDKVRARATLLLAEVLTRLPDLQLAPSAVQLLLTFFADRLADFPS 101
[Close]
BLAST of mRNA_H-elongata_contig71530.14821.1 vs. uniprot
Match: K3WEQ0_GLOUD (MMS19 nucleotide excision repair protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WEQ0_GLOUD)

HSP 1 Score: 54.3 bits (129), Expect = 2.730e-7
Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   10 QVRERATLLLAELLARLPELPLAPSSASRFAEFFSSRLADYPS 138
            +VR RA  LLAE+L+RLPELPL P++     +FF+ RLADYPS
Sbjct:   59 KVRARAMQLLAEVLSRLPELPLTPNAVQLLVDFFADRLADYPS 101
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71530.14821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LJJ0_ECTSI1.010e-1280.00MMS19 nucleotide excision repair protein n=1 Tax=E... [more]
A0A6H5KCY0_9PHAE6.570e-1281.40MMS19 nucleotide excision repair protein (Fragment... [more]
A0A3R7JFL1_9STRA1.630e-863.04MMS19 nucleotide excision repair protein n=1 Tax=P... [more]
A0A421GLT5_9STRA1.630e-863.04MMS19 nucleotide excision repair protein n=3 Tax=P... [more]
A0A2P4Y010_9STRA5.700e-860.87MMS19 nucleotide excision repair protein (Fragment... [more]
D0NXI8_PHYIT5.700e-860.87MMS19 nucleotide excision repair protein n=10 Tax=... [more]
H3GFF5_PHYRM5.700e-860.87MMS19 nucleotide excision repair protein n=22 Tax=... [more]
A0A0N7L5V8_PLAHL5.700e-860.87MMS19 nucleotide excision repair protein n=1 Tax=P... [more]
A0A662XHF0_9STRA5.700e-860.87MMS19 nucleotide excision repair protein n=2 Tax=N... [more]
K3WEQ0_GLOUD2.730e-760.47MMS19 nucleotide excision repair protein n=1 Tax=G... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71530contigH-elongata_contig71530:2526..2663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue5.2e-10
Seed eggNOG ortholog2880.D8LJJ0
Preferred nameMMS19
KEGG koko:K15075
GOsGO:0000018,GO:0000160,GO:0000228,GO:0000428,GO:0000775,GO:0000785,GO:0000790,GO:0000792,GO:0003674,GO:0003712,GO:0003713,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005675,GO:0005694,GO:0005720,GO:0005721,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006289,GO:0006351,GO:0006355,GO:0006725,GO:0006790,GO:0006807,GO:0006950,GO:0006974,GO:0007059,GO:0007154,GO:0007165,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010569,GO:0010604,GO:0010628,GO:0015630,GO:0016043,GO:0016070,GO:0016226,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0022607,GO:0023052,GO:0030159,GO:0030331,GO:0030674,GO:0030880,GO:0031163,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031618,GO:0031974,GO:0031981,GO:0032774,GO:0032806,GO:0032947,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035257,GO:0035258,GO:0035556,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044798,GO:0045739,GO:0045893,GO:0045911,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051186,GO:0051252,GO:0051254,GO:0051427,GO:0051604,GO:0051716,GO:0055029,GO:0060090,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0071817,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090575,GO:0097361,GO:0097428,GO:0097659,GO:0098687,GO:0106035,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902494,GO:1902554,GO:1902680,GO:1902911,GO:1903506,GO:1903508,GO:1905168,GO:1990234,GO:2000112,GO:2000779,GO:2000781,GO:2001020,GO:2001022,GO:2001141
EggNOG free text desc.positive regulation of double-strand break repair via homologous recombination
EggNOG OGsKOG1967@1,KOG1967@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931116.4253163-CDS-H-elongata_contig71530:2525..26631622931116.4253163-CDS-H-elongata_contig71530:2525..2663Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71530 2526..2663 +
1691679704.9830873-CDS-H-elongata_contig71530:2525..26631691679704.9830873-CDS-H-elongata_contig71530:2525..2663Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71530 2526..2663 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71530.14821.1prot_H-elongata_contig71530.14821.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71530 2526..2663 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71530.14821.1

>prot_H-elongata_contig71530.14821.1 ID=prot_H-elongata_contig71530.14821.1|Name=mRNA_H-elongata_contig71530.14821.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
GEVQVRERATLLLAELLARLPELPLAPSSASRFAEFFSSRLADYPS
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mRNA from alignment at H-elongata_contig71530:2526..2663+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71530.14821.1 ID=mRNA_H-elongata_contig71530.14821.1|Name=mRNA_H-elongata_contig71530.14821.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig71530:2526..2663+ (Himanthalia elongata Himel1 dioecious)
GGCGAGGTGCAGGTCCGCGAGAGGGCAACGCTGTTGCTCGCCGAGCTGTT
GGCGCGGCTCCCGGAGCTCCCCCTGGCTCCATCTTCCGCTTCGCGATTCG
CGGAGTTCTTCTCGTCACGCCTCGCGGACTACCCCTCG
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Coding sequence (CDS) from alignment at H-elongata_contig71530:2526..2663+

>mRNA_H-elongata_contig71530.14821.1 ID=mRNA_H-elongata_contig71530.14821.1|Name=mRNA_H-elongata_contig71530.14821.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig71530:2526..2663+ (Himanthalia elongata Himel1 dioecious)
GGCGAGGTGCAGGTCCGCGAGAGGGCAACGCTGTTGCTCGCCGAGCTGTT
GGCGCGGCTCCCGGAGCTCCCCCTGGCTCCATCTTCCGCTTCGCGATTCG
CGGAGTTCTTCTCGTCACGCCTCGCGGACTACCCCTCGGGCGAGGTGCAG
GTCCGCGAGAGGGCAACGCTGTTGCTCGCCGAGCTGTTGGCGCGGCTCCC
GGAGCTCCCCCTGGCTCCATCTTCCGCTTCGCGATTCGCGGAGTTCTTCT
CGTCACGCCTCGCGGACTACCCCTCG
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