prot_H-elongata_contig7124.14783.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig7124.14783.1
Unique Nameprot_H-elongata_contig7124.14783.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length958
Homology
BLAST of mRNA_H-elongata_contig7124.14783.1 vs. uniprot
Match: A0A6H5L295_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L295_9PHAE)

HSP 1 Score: 591 bits (1524), Expect = 7.240e-190
Identity = 460/1118 (41.14%), Postives = 558/1118 (49.91%), Query Frame = 0
Query:    1 VYHLPCVTPKLKELPPEELWLCPACTAEVTSRQVLKRRRVEDSGR-TSPGXXXXXXXXXXXXLERLPSFHGVKPENEAFRAFVQHKKQTLDIGLFSTAQAAARAYDRKALSLFGDAAVCNFPADEQVEVEGVGADGNTVKGVVRSFHQWRAEMQWGNKKRHLGFFDRLDHAAFAYNRAALYMNGPETALNPTKEDYVPPPPTGAPVRVPRNKIFAQQLPLPLSARAQADGAV-SAEQLRRRYQMQGKYHVPLVGEEHQVSYLPPLP-----------------------PPSRPWSGLSALARSTTKSP-----EGCVFATPTDVSDARIVIRVKLPARPVVRMGDRTRTAVSMASPERESDANAGDRCIRQVVLHDADESSLSSRGTGCGSFSLT------PPSRPPTGVYEAGLAEE-------------------KAARQGKDIASPTAAAMADSSLEWSSDLAQAVADSGFKGRAYANES------VARIGKILPVTPEYGSPGKESTASRSETNHRSKVVQAALLKEKVALTP--------SRHEAKQKCTVRVARRVVLSCPKEKTPTISSPVSASCSVTGQSLNGGK-----GDKKAARVDSSV-PCISPSAAGM----GGSSQWNNDGAKPERRQARLELTSDTYSPCV---QASLDQVDHPALVLKTGGFLSTPRKVASVKVADSTGVA------------PTAEGKISSNQSPQPTE----------------YRGAVVLVRRKEQRFSTTPPCDCSDRETDEEDCGAGVSRRGVSTVVEVAPHTSDGPPLPNLAFEDVAELVWDPRSGPKPKGAGEGK----TAEKAKMAVERVMWERDSTLLGRVAPQHTERAMQVLQTCRHDVERAAQILSVRHGIHVIGLSSVRKTRNSRAEQNAFEAEGAGGSGSDL-------------------NGASG--GWSNGTYNAAAIPGSQHATA------ASSPRAVV-----------------RRADAQDVTRDEARLAGEAFMRHGRDLNAVAKALGWKRNRVVDYYYCIWKYSPAYQVWKATRHQAGLPGVGNGAVSGVP---LSSSSLGGPVGGGLPKASSDGMRWRGSRLRTLKTSSS 957
            VYHL CVTPKL ELP E+LW+CPACTAEVTSR++ KRRR+ED GR TSPG             ER   + GVK EN+AFRAFV +K QT+DIGLF TAQAAARAYDRKALSLFGDAAVCNFPADEQVEVEGV  DG TVKGVVRSFHQWRAEMQWGNKKRHLGFF+RL+HA+ AYNRAALYMNGPET LNPTKE YVPPP TG  VRVPRNK+F QQLPLPL A+AQ +G+  SAE +RRR QM+GKYH PLVG+ HQVS LPPL                        P S   + +S L  +   +P     E  V    T   D    ++V++ ++ V+        A              G      VV   A ++ ++ +G G  + +        P ++PP    EA  A+                     AA      A P AAA    S   ++ +A     S  +G   A  S      +A  G ++ +  E   P +   A   E ++R  + +AA        TP           +     T      V     K   P  +  V+A  S + Q L GG      G  K    ++SV P  +P  A      GG S+  +   +P     R  L     SP     Q+SL     P  +L + G     R  A V  A++  +A            P +       +SP P                                                                           +P+L+FEDVAELVWDPRSGPKP+GA E +     A   +  +E+ MW+RDS LL RVAP H E++MQVLQ  RHDVERAAQ+L+VRHGIHV+GLSSVR TRN RAE                                   NG +   GW       A        TA      AS PR                    ++ADAQ VT +EA+LAG+AFMRHGRDLNAV KALGWKR+RVV+YYYC+WKYSPAYQVWKATRH+AGLPGV  GA +G     + SSS GG  GGG+ KASSDGMRWRGSRLRTLK  SS
Sbjct:  175 VYHLCCVTPKLTELPDEDLWMCPACTAEVTSREIAKRRRLEDGGRSTSPGPGGSGRHHGQ---ERARGYQGVKAENDAFRAFVLYKNQTMDIGLFPTAQAAARAYDRKALSLFGDAAVCNFPADEQVEVEGVATDGTTVKGVVRSFHQWRAEMQWGNKKRHLGFFERLEHASQAYNRAALYMNGPETPLNPTKEGYVPPPLTGRSVRVPRNKLFVQQLPLPLIAQAQVEGSNNSAEFVRRRQQMRGKYHSPLVGDNHQVSRLPPLXXXXXXXXXXXXXXXXXXXXXXXXPSSTGEAAMSLLGATVAAAPGARKSESRVNGGGTTCVDLPEALQVEVSSKLVISQAVAA-PAXXXXXXXXXLPTVVGTVTYSPVVSAVASQA-VAGKGKGRATAAANDTVGCPPATKPPPAAVEASCADSLPEAAAGAETAFTTKSAIVPAASSSAGFAKPPAAAEDGVSKHRAACVAATALTSPPRGLTKAVNSTGDGTLLANRGDMMMLDLER--PWRSQLADSMEVDNRMGLDEAAANTVASVATPPPADVSGIKAEDGSIVITAGTTTTVSEVFLKAVYPAAAVAVAAEASRS-QILAGGCETFTWGQTKPTEAEASVAPPSTPRRASAESERGGGSRTAD--YRPVTGWERTTLMRAPSSPAPSPPQSSLPANGTP--ILASSG---ATRGQAGVGAAETASLAMKPLRSAVASATPASSSVTPPARSPSPNAAGRKRRLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSFEDVAELVWDPRSGPKPRGAAEARGPRGAAATNRSPLEQAMWDRDSALLERVAPAHAEKSMQVLQMHRHDVERAAQMLTVRHGIHVVGLSSVRTTRNKRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSNGRASFEGWQAAAAPRAPAAAKPVGTASPTHGRASGPRGXXXXXXXXXXXXGGTPRCGKKADAQGVTHEEAKLAGDAFMRHGRDLNAVQKALGWKRSRVVEYYYCVWKYSPAYQVWKATRHKAGLPGVSKGAGTGGAGSGIHSSSAGGLTGGGILKASSDGMRWRGSRLRTLKAPSS 1277          
BLAST of mRNA_H-elongata_contig7124.14783.1 vs. uniprot
Match: D7FQ98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ98_ECTSI)

HSP 1 Score: 262 bits (670), Expect = 8.010e-74
Identity = 165/332 (49.70%), Postives = 192/332 (57.83%), Query Frame = 0
Query:  698 DVAELVWDPRSGPKPKGAGEGK----TAEKAKMAVERVMWERDSTLLGRVAPQHTERAMQVLQTCRHDVERAAQILSVRHGIHVIGLSSVRKTRNSRAE-------------------------------------------QNAFEAEGAGGSGSDLNGASGGWSNGTYNAAAIPGSQHATAASSPRAVV----------------------RRADAQDVTRDEARLAGEAFMRHGRDLNAVAKALGWKRNRVVDYYYCIWKYSPAYQVWKATRHQAGLPGVGNGAVSGVPLS---SSSLGGPVGGGLPKASSDGMRWRGSRLRTLKTSSS 957
            DVAELVWDPRSGPKP+GA E +     A   +  +E+ MW+RDSTLL RVAP H E++MQVLQ  RHDVERAAQ+L+VRHGIHV+GLSSVR TRN RAE                                           + +FE                GW      A   P +  A   +SP                          ++ADAQ VTR+EA+LAG+AFMRHGRDLNAV K LGWKR+RVV+YYYC+WKYSPAYQVWKATRH+AGLPGV  GA +G   S   S+S GG  GGG+  ASSDGMRWRGSRLRTLK  SS
Sbjct:  214 DVAELVWDPRSGPKPRGAAEARGPRGVAAANRSPLEQAMWDRDSTLLERVAPAHAEKSMQVLQMHRHDVERAAQMLTVRHGIHVMGLSSVRTTRNKRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRASFE----------------GWQ--AAAAPRAPPAAKAVGTASPXXXXXXXXXXXXXXXXXXXXGAPRCGKKADAQGVTREEAKLAGDAFMRHGRDLNAVQKTLGWKRSRVVEYYYCVWKYSPAYQVWKATRHKAGLPGVSKGAGTGGAGSGVHSASAGGLTGGGILNASSDGMRWRGSRLRTLKAPSS 527          
BLAST of mRNA_H-elongata_contig7124.14783.1 vs. uniprot
Match: D7FQ97_ECTSI (Chromodomain helicase-DNA-binding protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ97_ECTSI)

HSP 1 Score: 253 bits (647), Expect = 9.170e-74
Identity = 128/169 (75.74%), Postives = 139/169 (82.25%), Query Frame = 0
Query:    1 VYHLPCVTPKLKELPPEELWLCPACTAEVTSRQVLKRRRVEDSGR-TSPGXXXXXXXXXXXXLERLPSFHGVKPENEAFRAFVQHKKQTLDIGLFSTAQAAARAYDRKALSLFGDAAVCNFPADEQVEVEGVGADGNTVKGVVRSFHQWRAEMQWGNKKRHLGFFDRLD 168
            VYHL CVTPKL ELP E+LW+CPACTAEVTSRQ+ KRRR+ED GR TSPG             ER+  + GVK EN+AFRAFV +K QT+DIGLF TAQAAARAYDRKALSLFGDAAVCNFPADEQVEVEGV  DG TVKGVVRSFHQWRAEMQWGNKKRHLGFF+R +
Sbjct:  105 VYHLCCVTPKLTELPDEDLWMCPACTAEVTSRQIAKRRRLEDGGRSTSPGPGGSGRHHGQ---ERVRGYQGVKAENDAFRAFVLYKNQTMDIGLFPTAQAAARAYDRKALSLFGDAAVCNFPADEQVEVEGVATDGTTVKGVVRSFHQWRAEMQWGNKKRHLGFFERRE 270          
BLAST of mRNA_H-elongata_contig7124.14783.1 vs. uniprot
Match: UPI000279C3DD (AP2 domain-containing protein n=1 Tax=Bacillus cereus TaxID=1396 RepID=UPI000279C3DD)

HSP 1 Score: 58.2 bits (139), Expect = 1.420e-5
Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 0
Query:   68 FHGVKPENEAFRAFVQHKKQTLDIGLFSTAQAAARAYDRKALSLFGDAAVCNFPAD 123
            F GV   N+ + A +  K+Q + +G+F T++ AARAYD+KA+ LFGD AV NFP +
Sbjct:  174 FRGVSKSNKKYTARIIFKRQHIYLGVFGTSEEAARAYDKKAIELFGDKAVLNFPEE 229          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7124.14783.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L295_9PHAE7.240e-19041.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQ98_ECTSI8.010e-7449.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FQ97_ECTSI9.170e-7475.74Chromodomain helicase-DNA-binding protein, putativ... [more]
UPI000279C3DD1.420e-548.21AP2 domain-containing protein n=1 Tax=Bacillus cer... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001471AP2/ERF domainSMARTSM00380rav1_2coord: 67..127
e-value: 0.0014
score: 16.7
coord: 139..197
e-value: 0.0038
score: 12.5
IPR001471AP2/ERF domainPROSITEPS51032AP2_ERFcoord: 36..121
score: 10.112
IPR001471AP2/ERF domainPROSITEPS51032AP2_ERFcoord: 127..191
score: 9.321
IPR036955AP2/ERF domain superfamilyGENE3D3.30.730.10coord: 68..123
e-value: 4.4E-8
score: 34.8
coord: 139..192
e-value: 3.9E-5
score: 25.4
NoneNo IPR availablePANTHERPTHR31190FAMILY NOT NAMEDcoord: 88..125
NoneNo IPR availablePANTHERPTHR31190:SF134ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF098coord: 88..125
IPR016177DNA-binding domain superfamilySUPERFAMILY54171DNA-binding domaincoord: 139..189
IPR016177DNA-binding domain superfamilySUPERFAMILY54171DNA-binding domaincoord: 76..122

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7124contigH-elongata_contig7124:1402..6905 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7124.14783.1mRNA_H-elongata_contig7124.14783.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig7124 1402..6905 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig7124.14783.1 ID=prot_H-elongata_contig7124.14783.1|Name=mRNA_H-elongata_contig7124.14783.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=958bp
VYHLPCVTPKLKELPPEELWLCPACTAEVTSRQVLKRRRVEDSGRTSPGP
GSGRGQGQNQNLERLPSFHGVKPENEAFRAFVQHKKQTLDIGLFSTAQAA
ARAYDRKALSLFGDAAVCNFPADEQVEVEGVGADGNTVKGVVRSFHQWRA
EMQWGNKKRHLGFFDRLDHAAFAYNRAALYMNGPETALNPTKEDYVPPPP
TGAPVRVPRNKIFAQQLPLPLSARAQADGAVSAEQLRRRYQMQGKYHVPL
VGEEHQVSYLPPLPPPSRPWSGLSALARSTTKSPEGCVFATPTDVSDARI
VIRVKLPARPVVRMGDRTRTAVSMASPERESDANAGDRCIRQVVLHDADE
SSLSSRGTGCGSFSLTPPSRPPTGVYEAGLAEEKAARQGKDIASPTAAAM
ADSSLEWSSDLAQAVADSGFKGRAYANESVARIGKILPVTPEYGSPGKES
TASRSETNHRSKVVQAALLKEKVALTPSRHEAKQKCTVRVARRVVLSCPK
EKTPTISSPVSASCSVTGQSLNGGKGDKKAARVDSSVPCISPSAAGMGGS
SQWNNDGAKPERRQARLELTSDTYSPCVQASLDQVDHPALVLKTGGFLST
PRKVASVKVADSTGVAPTAEGKISSNQSPQPTEYRGAVVLVRRKEQRFST
TPPCDCSDRETDEEDCGAGVSRRGVSTVVEVAPHTSDGPPLPNLAFEDVA
ELVWDPRSGPKPKGAGEGKTAEKAKMAVERVMWERDSTLLGRVAPQHTER
AMQVLQTCRHDVERAAQILSVRHGIHVIGLSSVRKTRNSRAEQNAFEAEG
AGGSGSDLNGASGGWSNGTYNAAAIPGSQHATAASSPRAVVRRADAQDVT
RDEARLAGEAFMRHGRDLNAVAKALGWKRNRVVDYYYCIWKYSPAYQVWK
ATRHQAGLPGVGNGAVSGVPLSSSSLGGPVGGGLPKASSDGMRWRGSRLR
TLKTSSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001471AP2/ERF_dom
IPR036955AP2/ERF_dom_sf
IPR016177DNA-bd_dom_sf