mRNA_H-elongata_contig7124.14783.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7124.14783.1 vs. uniprot
Match: A0A6H5L295_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L295_9PHAE) HSP 1 Score: 591 bits (1524), Expect = 7.240e-190 Identity = 460/1118 (41.14%), Postives = 558/1118 (49.91%), Query Frame = 1
Query: 1 VYHLPCVTPKLKELPPEELWLCPACTAEVTSRQVLKRRRVEDSGR-TSPGXXXXXXXXXXXXLERLPSFHGVKPENEAFRAFVQHKKQTLDIGLFSTAQAAARAYDRKALSLFGDAAVCNFPADEQVEVEGVGADGNTVKGVVRSFHQWRAEMQWGNKKRHLGFFDRLDHAAFAYNRAALYMNGPETALNPTKEDYVPPPPTGAPVRVPRNKIFAQQLPLPLSARAQADGAV-SAEQLRRRYQMQGKYHVPLVGEEHQVSYLPPLP-----------------------PPSRPWSGLSALARSTTKSP-----EGCVFATPTDVSDARIVIRVKLPARPVVRMGDRTRTAVSMASPERESDANAGDRCIRQVVLHDADESSLSSRGTGCGSFSLT------PPSRPPTGVYEAGLAEE-------------------KAARQGKDIASPTAAAMADSSLEWSSDLAQAVADSGFKGRAYANES------VARIGKILPVTPEYGSPGKESTASRSETNHRSKVVQAALLKEKVALTP--------SRHEAKQKCTVRVARRVVLSCPKEKTPTISSPVSASCSVTGQSLNGGK-----GDKKAARVDSSV-PCISPSAAGM----GGSSQWNNDGAKPERRQARLELTSDTYSPCV---QASLDQVDHPALVLKTGGFLSTPRKVASVKVADSTGVA------------PTAEGKISSNQSPQPTE----------------YRGAVVLVRRKEQRFSTTPPCDCSDRETDEEDCGAGVSRRGVSTVVEVAPHTSDGPPLPNLAFEDVAELVWDPRSGPKPKGAGEGK----TAEKAKMAVERVMWERDSTLLGRVAPQHTERAMQVLQTCRHDVERAAQILSVRHGIHVIGLSSVRKTRNSRAEQNAFEAEGAGGSGSDL-------------------NGASG--GWSNGTYNAAAIPGSQHATA------ASSPRAVV-----------------RRADAQDVTRDEARLAGEAFMRHGRDLNAVAKALGWKRNRVVDYYYCIWKYSPAYQVWKATRHQAGLPGVGNGAVSGVP---LSSSSLGGPVGGGLPKASSDGMRWRGSRLRTLKTSSS 2871
VYHL CVTPKL ELP E+LW+CPACTAEVTSR++ KRRR+ED GR TSPG ER + GVK EN+AFRAFV +K QT+DIGLF TAQAAARAYDRKALSLFGDAAVCNFPADEQVEVEGV DG TVKGVVRSFHQWRAEMQWGNKKRHLGFF+RL+HA+ AYNRAALYMNGPET LNPTKE YVPPP TG VRVPRNK+F QQLPLPL A+AQ +G+ SAE +RRR QM+GKYH PLVG+ HQVS LPPL P S + +S L + +P E V T D ++V++ ++ V+ A G VV A ++ ++ +G G + + P ++PP EA A+ AA A P AAA S ++ +A S +G A S +A G ++ + E P + A E ++R + +AA TP + T V K P + V+A S + Q L GG G K ++SV P +P A GG S+ + +P R L SP Q+SL P +L + G R A V A++ +A P + +SP P +P+L+FEDVAELVWDPRSGPKP+GA E + A + +E+ MW+RDS LL RVAP H E++MQVLQ RHDVERAAQ+L+VRHGIHV+GLSSVR TRN RAE NG + GW A TA AS PR ++ADAQ VT +EA+LAG+AFMRHGRDLNAV KALGWKR+RVV+YYYC+WKYSPAYQVWKATRH+AGLPGV GA +G + SSS GG GGG+ KASSDGMRWRGSRLRTLK SS
Sbjct: 175 VYHLCCVTPKLTELPDEDLWMCPACTAEVTSREIAKRRRLEDGGRSTSPGPGGSGRHHGQ---ERARGYQGVKAENDAFRAFVLYKNQTMDIGLFPTAQAAARAYDRKALSLFGDAAVCNFPADEQVEVEGVATDGTTVKGVVRSFHQWRAEMQWGNKKRHLGFFERLEHASQAYNRAALYMNGPETPLNPTKEGYVPPPLTGRSVRVPRNKLFVQQLPLPLIAQAQVEGSNNSAEFVRRRQQMRGKYHSPLVGDNHQVSRLPPLXXXXXXXXXXXXXXXXXXXXXXXXPSSTGEAAMSLLGATVAAAPGARKSESRVNGGGTTCVDLPEALQVEVSSKLVISQAVAA-PAXXXXXXXXXLPTVVGTVTYSPVVSAVASQA-VAGKGKGRATAAANDTVGCPPATKPPPAAVEASCADSLPEAAAGAETAFTTKSAIVPAASSSAGFAKPPAAAEDGVSKHRAACVAATALTSPPRGLTKAVNSTGDGTLLANRGDMMMLDLER--PWRSQLADSMEVDNRMGLDEAAANTVASVATPPPADVSGIKAEDGSIVITAGTTTTVSEVFLKAVYPAAAVAVAAEASRS-QILAGGCETFTWGQTKPTEAEASVAPPSTPRRASAESERGGGSRTAD--YRPVTGWERTTLMRAPSSPAPSPPQSSLPANGTP--ILASSG---ATRGQAGVGAAETASLAMKPLRSAVASATPASSSVTPPARSPSPNAAGRKRRLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSFEDVAELVWDPRSGPKPRGAAEARGPRGAAATNRSPLEQAMWDRDSALLERVAPAHAEKSMQVLQMHRHDVERAAQMLTVRHGIHVVGLSSVRTTRNKRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSNGRASFEGWQAAAAPRAPAAAKPVGTASPTHGRASGPRGXXXXXXXXXXXXGGTPRCGKKADAQGVTHEEAKLAGDAFMRHGRDLNAVQKALGWKRSRVVEYYYCVWKYSPAYQVWKATRHKAGLPGVSKGAGTGGAGSGIHSSSAGGLTGGGILKASSDGMRWRGSRLRTLKAPSS 1277
BLAST of mRNA_H-elongata_contig7124.14783.1 vs. uniprot
Match: D7FQ98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ98_ECTSI) HSP 1 Score: 262 bits (670), Expect = 8.010e-74 Identity = 165/332 (49.70%), Postives = 192/332 (57.83%), Query Frame = 1
Query: 2092 DVAELVWDPRSGPKPKGAGEGK----TAEKAKMAVERVMWERDSTLLGRVAPQHTERAMQVLQTCRHDVERAAQILSVRHGIHVIGLSSVRKTRNSRAE-------------------------------------------QNAFEAEGAGGSGSDLNGASGGWSNGTYNAAAIPGSQHATAASSPRAVV----------------------RRADAQDVTRDEARLAGEAFMRHGRDLNAVAKALGWKRNRVVDYYYCIWKYSPAYQVWKATRHQAGLPGVGNGAVSGVPLS---SSSLGGPVGGGLPKASSDGMRWRGSRLRTLKTSSS 2871
DVAELVWDPRSGPKP+GA E + A + +E+ MW+RDSTLL RVAP H E++MQVLQ RHDVERAAQ+L+VRHGIHV+GLSSVR TRN RAE + +FE GW A P + A +SP ++ADAQ VTR+EA+LAG+AFMRHGRDLNAV K LGWKR+RVV+YYYC+WKYSPAYQVWKATRH+AGLPGV GA +G S S+S GG GGG+ ASSDGMRWRGSRLRTLK SS
Sbjct: 214 DVAELVWDPRSGPKPRGAAEARGPRGVAAANRSPLEQAMWDRDSTLLERVAPAHAEKSMQVLQMHRHDVERAAQMLTVRHGIHVMGLSSVRTTRNKRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRASFE----------------GWQ--AAAAPRAPPAAKAVGTASPXXXXXXXXXXXXXXXXXXXXGAPRCGKKADAQGVTREEAKLAGDAFMRHGRDLNAVQKTLGWKRSRVVEYYYCVWKYSPAYQVWKATRHKAGLPGVSKGAGTGGAGSGVHSASAGGLTGGGILNASSDGMRWRGSRLRTLKAPSS 527
BLAST of mRNA_H-elongata_contig7124.14783.1 vs. uniprot
Match: D7FQ97_ECTSI (Chromodomain helicase-DNA-binding protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ97_ECTSI) HSP 1 Score: 253 bits (647), Expect = 9.170e-74 Identity = 128/169 (75.74%), Postives = 139/169 (82.25%), Query Frame = 1
Query: 1 VYHLPCVTPKLKELPPEELWLCPACTAEVTSRQVLKRRRVEDSGR-TSPGXXXXXXXXXXXXLERLPSFHGVKPENEAFRAFVQHKKQTLDIGLFSTAQAAARAYDRKALSLFGDAAVCNFPADEQVEVEGVGADGNTVKGVVRSFHQWRAEMQWGNKKRHLGFFDRLD 504
VYHL CVTPKL ELP E+LW+CPACTAEVTSRQ+ KRRR+ED GR TSPG ER+ + GVK EN+AFRAFV +K QT+DIGLF TAQAAARAYDRKALSLFGDAAVCNFPADEQVEVEGV DG TVKGVVRSFHQWRAEMQWGNKKRHLGFF+R +
Sbjct: 105 VYHLCCVTPKLTELPDEDLWMCPACTAEVTSRQIAKRRRLEDGGRSTSPGPGGSGRHHGQ---ERVRGYQGVKAENDAFRAFVLYKNQTMDIGLFPTAQAAARAYDRKALSLFGDAAVCNFPADEQVEVEGVATDGTTVKGVVRSFHQWRAEMQWGNKKRHLGFFERRE 270
BLAST of mRNA_H-elongata_contig7124.14783.1 vs. uniprot
Match: UPI000279C3DD (AP2 domain-containing protein n=1 Tax=Bacillus cereus TaxID=1396 RepID=UPI000279C3DD) HSP 1 Score: 58.2 bits (139), Expect = 1.420e-5 Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 1
Query: 202 FHGVKPENEAFRAFVQHKKQTLDIGLFSTAQAAARAYDRKALSLFGDAAVCNFPAD 369
F GV N+ + A + K+Q + +G+F T++ AARAYD+KA+ LFGD AV NFP +
Sbjct: 174 FRGVSKSNKKYTARIIFKRQHIYLGVFGTSEEAARAYDKKAIELFGDKAVLNFPEE 229 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7124.14783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7124.14783.1 >prot_H-elongata_contig7124.14783.1 ID=prot_H-elongata_contig7124.14783.1|Name=mRNA_H-elongata_contig7124.14783.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=958bp VYHLPCVTPKLKELPPEELWLCPACTAEVTSRQVLKRRRVEDSGRTSPGPback to top mRNA from alignment at H-elongata_contig7124:1402..6905+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7124.14783.1 ID=mRNA_H-elongata_contig7124.14783.1|Name=mRNA_H-elongata_contig7124.14783.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5504bp|location=Sequence derived from alignment at H-elongata_contig7124:1402..6905+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7124:1402..6905+ >mRNA_H-elongata_contig7124.14783.1 ID=mRNA_H-elongata_contig7124.14783.1|Name=mRNA_H-elongata_contig7124.14783.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=5748bp|location=Sequence derived from alignment at H-elongata_contig7124:1402..6905+ (Himanthalia elongata Himel1 dioecious)back to top |