prot_H-elongata_contig7109.14770.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig7109.14770.1
Unique Nameprot_H-elongata_contig7109.14770.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length195
Homology
BLAST of mRNA_H-elongata_contig7109.14770.1 vs. uniprot
Match: A0A6H5L060_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L060_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.190e-25
Identity = 70/192 (36.46%), Postives = 100/192 (52.08%), Query Frame = 0
Query:    2 QSRLCWFRIFTGGIKEKGFEQSRADPCVFRRIVDVKVVTVIVAYANNILVISKAKKDDERTLLDLGLCFKIKDLAEAEFCVGCQITRNRKARTLTFHQQVYAETVAKRFSVTKASMIPMATGMKPLSKEDSPKIPKEEKNISCIPSREAVGALMWVATMTIPDISFTAYNLDKLCDDLGPVHWKAAIKALQY 193
            QS   W       + E GFEQ +ADPCVFR++VD   V +IV Y ++ILV + + +D E  L  L   F  K+L E ++  GC I R+ K  TL   Q  Y  ++ KRF V   S IP   G+  + K       +E++     P REA+G++MWV+T ++PD+SF    + +        HW A  K L Y
Sbjct:  919 QSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVAVMIIVIYVDDILV-AGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVKGGTLRISQTAYIGSMVKRFDVQSTSRIPATPGVDLVPK-------REDEEGGEWPRREAIGSMMWVSTFSLPDVSFAVRAVARHAHAPAKRHWDAIQKTLGY 1102          
BLAST of mRNA_H-elongata_contig7109.14770.1 vs. uniprot
Match: A0A6H5K616_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K616_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 2.280e-25
Identity = 70/192 (36.46%), Postives = 101/192 (52.60%), Query Frame = 0
Query:    2 QSRLCWFRIFTGGIKEKGFEQSRADPCVFRRIVDVKVVTVIVAYANNILVISKAKKDDERTLLDLGLCFKIKDLAEAEFCVGCQITRNRKARTLTFHQQVYAETVAKRFSVTKASMIPMATGMKPLSKEDSPKIPKEEKNISCIPSREAVGALMWVATMTIPDISFTAYNLDKLCDDLGPVHWKAAIKALQY 193
            QS   W       + E GFEQ +AD CVFR++ D  VV +IV Y ++ILV + + +D E  L  L   F  K+L E E+  GC I R  +A TL   Q  Y +++ KRF     S+IP + G+     +  PK  ++++N    P REA+G++MWV+T + PD+SF    +          HW A  K L Y
Sbjct:   71 QSGRQWGYHAADTLVENGFEQCKADTCVFRKMADEVVVMIIVIYVDDILV-AGSDEDCEELLASLNKKFPTKNLGECEWFDGCAIERGVEAGTLRISQTAYIDSMVKRFEAQSTSLIPASPGV-----DLGPK--RDDENGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVAHHAHAPAKRHWDAIQKILGY 254          
BLAST of mRNA_H-elongata_contig7109.14770.1 vs. uniprot
Match: A0A6H5JRE9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE9_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 4.110e-25
Identity = 69/177 (38.98%), Postives = 98/177 (55.37%), Query Frame = 0
Query:   17 EKGFEQSRADPCVFRRIVDVKVVTVIVAYANNILVISKAKKDDERTLLDLGLCFKIKDLAEAEFCVGCQITRNRKARTLTFHQQVYAETVAKRFSVTKASMIPMATGMKPLSKEDSPKIPKEEKNISCIPSREAVGALMWVATMTIPDISFTAYNLDKLCDDLGPVHWKAAIKALQY 193
            E GFEQ +ADPCVFR++VD  VV +IV Y ++ILV + + +D E  L  L   F  K+L E E+  GC I R+ +A TL   Q  Y +++ +RF V   S IP   G      +  PK  +E++     P REA+G++MWV+T + PD+SF    + +        HW A  K L Y
Sbjct:  842 ENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILV-AGSDEDCEELLASLNKMFPTKNLGECEWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVVRHAHAPAKRHWDAIQKILGY 1010          
BLAST of mRNA_H-elongata_contig7109.14770.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 6.640e-25
Identity = 68/177 (38.42%), Postives = 98/177 (55.37%), Query Frame = 0
Query:   17 EKGFEQSRADPCVFRRIVDVKVVTVIVAYANNILVISKAKKDDERTLLDLGLCFKIKDLAEAEFCVGCQITRNRKARTLTFHQQVYAETVAKRFSVTKASMIPMATGMKPLSKEDSPKIPKEEKNISCIPSREAVGALMWVATMTIPDISFTAYNLDKLCDDLGPVHWKAAIKALQY 193
            E GFEQ +ADPCVFR++VD  VV +IV Y ++ILV + + +D E  L  L   F  K+L E ++  GC I R+ +A TL   Q  Y +++ +RF V   S IP   G      +  PK  +E++     P REA+G++MWV+T + PD+SF    + +        HW A  K L Y
Sbjct:  192 ENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILV-AGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGY 360          
BLAST of mRNA_H-elongata_contig7109.14770.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 7.050e-25
Identity = 72/192 (37.50%), Postives = 101/192 (52.60%), Query Frame = 0
Query:    2 QSRLCWFRIFTGGIKEKGFEQSRADPCVFRRIVDVKVVTVIVAYANNILVISKAKKDDERTLLDLGLCFKIKDLAEAEFCVGCQITRNRKARTLTFHQQVYAETVAKRFSVTKASMIPMATGMKPLSKEDSPKIPKEEKNISCIPSREAVGALMWVATMTIPDISFTAYNLDKLCDDLGPVHWKAAIKALQY 193
            QS   W       + E GFEQ +ADPCVFR++VD  VV +IV Y ++ILV + + +D E  L  L   F  K+L E ++  GC I R+ +  TL   Q  Y +++ KRF V   S IP + G+    K D      +EK     P REA+G++MWV+T + PD+SF    + +        HW A  K L Y
Sbjct:  444 QSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILV-AGSDEDCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRD------DEKGGEW-PVREAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGY 627          
BLAST of mRNA_H-elongata_contig7109.14770.1 vs. uniprot
Match: A0A6H5JBN2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBN2_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 7.240e-25
Identity = 70/192 (36.46%), Postives = 103/192 (53.65%), Query Frame = 0
Query:    2 QSRLCWFRIFTGGIKEKGFEQSRADPCVFRRIVDVKVVTVIVAYANNILVISKAKKDDERTLLDLGLCFKIKDLAEAEFCVGCQITRNRKARTLTFHQQVYAETVAKRFSVTKASMIPMATGMKPLSKEDSPKIPKEEKNISCIPSREAVGALMWVATMTIPDISFTAYNLDKLCDDLGPVHWKAAIKALQY 193
            QS   W       + E GFEQ +ADPCVFR++VD  VV +IV Y ++ILV + + +D E  L  L   F  +++ E E+  GC I R+ +A  L   Q  Y +++ KRF V   S IP + G+     +  PK  ++ +N    P REA+G++MWV+T + PD+SF    + +        HW A  K L Y
Sbjct:  620 QSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILV-AGSDEDCEELLASLNKKFPTRNVGECEWFDGCAIERDVEAGNLKISQTAYIDSMVKRFDVQSTSRIPASPGV-----DLGPK--RDNENGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGY 803          
BLAST of mRNA_H-elongata_contig7109.14770.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 7.580e-25
Identity = 71/192 (36.98%), Postives = 102/192 (53.12%), Query Frame = 0
Query:    2 QSRLCWFRIFTGGIKEKGFEQSRADPCVFRRIVDVKVVTVIVAYANNILVISKAKKDDERTLLDLGLCFKIKDLAEAEFCVGCQITRNRKARTLTFHQQVYAETVAKRFSVTKASMIPMATGMKPLSKEDSPKIPKEEKNISCIPSREAVGALMWVATMTIPDISFTAYNLDKLCDDLGPVHWKAAIKALQY 193
            QS   W       + E GFEQ +ADPCVFR++VD  VV +IV Y ++ILV + + +D E  L  L   F  K+L E ++  GC I R+ +A TL   Q  Y +++ +RF V   S IP   G      +  PK  +E++     P REA+G++MWV+T + PD+SF    + +        HW A  K L Y
Sbjct:  890 QSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILV-AGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGY 1073          
BLAST of mRNA_H-elongata_contig7109.14770.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 7.580e-25
Identity = 71/192 (36.98%), Postives = 103/192 (53.65%), Query Frame = 0
Query:    2 QSRLCWFRIFTGGIKEKGFEQSRADPCVFRRIVDVKVVTVIVAYANNILVISKAKKDDERTLLDLGLCFKIKDLAEAEFCVGCQITRNRKARTLTFHQQVYAETVAKRFSVTKASMIPMATGMKPLSKEDSPKIPKEEKNISCIPSREAVGALMWVATMTIPDISFTAYNLDKLCDDLGPVHWKAAIKALQY 193
            QS   W       + E GFEQ +ADPCVFR++VD  VV +IV Y ++ILV + + +D E  L  L   F  K+L E ++  GC I R+ +A TL   Q  Y +++ +RF V   S IP   G      +  PK  +E++     P R+A+G++MWV+T + PD+SF A  + +        HW A  K L Y
Sbjct:  999 QSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILV-AGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVRKAIGSMMWVSTFSRPDVSFAARAVARHAHAPAKRHWDAIQKILGY 1182          
BLAST of mRNA_H-elongata_contig7109.14770.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 7.780e-25
Identity = 71/192 (36.98%), Postives = 102/192 (53.12%), Query Frame = 0
Query:    2 QSRLCWFRIFTGGIKEKGFEQSRADPCVFRRIVDVKVVTVIVAYANNILVISKAKKDDERTLLDLGLCFKIKDLAEAEFCVGCQITRNRKARTLTFHQQVYAETVAKRFSVTKASMIPMATGMKPLSKEDSPKIPKEEKNISCIPSREAVGALMWVATMTIPDISFTAYNLDKLCDDLGPVHWKAAIKALQY 193
            QS   W       + E GFEQ +ADPCVFR++VD  VV +IV Y ++ILV + + +D E  L  L   F  K+L E ++  GC I R+ +A TL   Q  Y +++ +RF V   S IP   G      +  PK  +E++     P REA+G++MWV+T + PD+SF    + +        HW A  K L Y
Sbjct: 1269 QSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILV-AGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGY 1452          
BLAST of mRNA_H-elongata_contig7109.14770.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 7.810e-25
Identity = 71/192 (36.98%), Postives = 102/192 (53.12%), Query Frame = 0
Query:    2 QSRLCWFRIFTGGIKEKGFEQSRADPCVFRRIVDVKVVTVIVAYANNILVISKAKKDDERTLLDLGLCFKIKDLAEAEFCVGCQITRNRKARTLTFHQQVYAETVAKRFSVTKASMIPMATGMKPLSKEDSPKIPKEEKNISCIPSREAVGALMWVATMTIPDISFTAYNLDKLCDDLGPVHWKAAIKALQY 193
            QS   W       + E GFEQ +ADPCVFR++VD  VV +IV Y ++ILV + + +D E  L  L   F  K+L E ++  GC I R+ +A TL   Q  Y +++ +RF V   S IP   G      +  PK  +E++     P REA+G++MWV+T + PD+SF    + +        HW A  K L Y
Sbjct: 1289 QSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILV-AGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGY 1472          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7109.14770.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L060_9PHAE1.190e-2536.46Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K616_9PHAE2.280e-2536.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRE9_9PHAE4.110e-2538.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KTL3_9PHAE6.640e-2538.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC10_9PHAE7.050e-2537.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JBN2_9PHAE7.240e-2536.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE7.580e-2536.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQW4_9PHAE7.580e-2536.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE7.780e-2536.98Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE7.810e-2536.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..117
e-value: 2.8E-9
score: 37.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7109contigH-elongata_contig7109:7944..8528 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7109.14770.1mRNA_H-elongata_contig7109.14770.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig7109 7809..8774 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig7109.14770.1 ID=prot_H-elongata_contig7109.14770.1|Name=mRNA_H-elongata_contig7109.14770.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=195bp
MQSRLCWFRIFTGGIKEKGFEQSRADPCVFRRIVDVKVVTVIVAYANNIL
VISKAKKDDERTLLDLGLCFKIKDLAEAEFCVGCQITRNRKARTLTFHQQ
VYAETVAKRFSVTKASMIPMATGMKPLSKEDSPKIPKEEKNISCIPSREA
VGALMWVATMTIPDISFTAYNLDKLCDDLGPVHWKAAIKALQYF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2