prot_H-elongata_contig69738.14622.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig69738.14622.1
Unique Nameprot_H-elongata_contig69738.14622.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length235
Homology
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BLAST of mRNA_H-elongata_contig69738.14622.1 vs. uniprot
Match: A0A6H5KYQ8_9PHAE (3'-5' exonuclease domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYQ8_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 5.370e-39
Identity = 111/272 (40.81%), Postives = 135/272 (49.63%), Query Frame = 0 
Query:   12 SSEPPHAALRFDRHLSFVEFHNGYALLMNCLGSVAREREQASGFLNEDGSYVAWFLQGRLAPERI-----AAE-----------------------AGGKA-------------------------RSNAVGRFFERLEVSSGASSSIWGALPNDCGNAHDAANLNAASRAYGEVVAAGTSRASSATNLD-------LVLFARSKGRPFVYCGAVECVAQEYAWNTGSSRLGAVRFILALRDWRRASARTAPGGEDDGDGEGAPSFGQVVRE 223
            S E P   LRFDRH SFVEF NGYALLMNC GS+  +RE ASGFLNE G+  AW+L+G+L+ +       AAE                       +GG+                            +A+G+F +RL  +SG  SS+ G LP D     D      A +  G   AAG        + +       LVLFAR KGRPFVYCGAV+CVAQEY W+ GSS LG VRF LALR+W  A+    P G    + EGAP    VV E
Sbjct: 1111 SGELP-TVLRFDRHQSFVEFGNGYALLMNCGGSI--DREHASGFLNESGTMAAWYLEGKLSSDAAFVDNEAAEYQRQQQDSLRQERQGTTAIVTPPSGGREVAEIFTGRGAPSSTGTGDAADGXXXXGDAIGKFLQRLADASGTPSSMLGGLPED-----DPPAFMEAPQRGGAGPAAGVGAGGEGADQEQQQHPPHLVLFARVKGRPFVYCGAVDCVAQEYVWSAGSS-LGRVRFTLALREWHEAATAVVPAGASRRE-EGAPRRSSVVGE 1372
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69738.14622.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KYQ8_9PHAE5.370e-3940.813'-5' exonuclease domain-containing protein n=2 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69738contigH-elongata_contig69738:1103..2805 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69738.14622.1mRNA_H-elongata_contig69738.14622.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig69738 247..3157 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig69738.14622.1 ID=prot_H-elongata_contig69738.14622.1|Name=mRNA_H-elongata_contig69738.14622.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=235bp
MSPRQETLSAASSEPPHAALRFDRHLSFVEFHNGYALLMNCLGSVARERE
QASGFLNEDGSYVAWFLQGRLAPERIAAEAGGKARSNAVGRFFERLEVSS
GASSSIWGALPNDCGNAHDAANLNAASRAYGEVVAAGTSRASSATNLDLV
LFARSKGRPFVYCGAVECVAQEYAWNTGSSRLGAVRFILALRDWRRASAR
TAPGGEDDGDGEGAPSFGQVVREGLKSESSPNRF*
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