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Homology
BLAST of mRNA_H-elongata_contig69738.14622.1 vs. uniprot
Match: A0A6H5KYQ8_9PHAE (3'-5' exonuclease domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYQ8_9PHAE) HSP 1 Score: 159 bits (402), Expect = 5.090e-37 Identity = 117/286 (40.91%), Postives = 142/286 (49.65%), Query Frame = 2
Query: 344 RACMSPRQETLSAASSEPPHAALRFDRHLSFVEFHNGYALLMNCLGSVAREREQASGFLNEDGSYVAWFLQGRLAPERI-----AAE-----------------------AGGKA-------------------------RSNAVGRFFERLEVSSGASSSIWGALPNDCGNAHDAANLNAASRAYGEVVAAGTSRASSATNLD-------LVLFARSKGRPFVYCGAVECVAQEYAWNTGSSRLGAVRFILALRDWRRASARTAPGGEDDGDGEGAPSFGQVVRE 1021
RAC+ PR E S E P LRFDRH SFVEF NGYALLMNC GS+ +RE ASGFLNE G+ AW+L+G+L+ + AAE +GG+ +A+G+F +RL +SG SS+ G LP D D A + G AAG + + LVLFAR KGRPFVYCGAV+CVAQEY W+ GSS LG VRF LALR+W A+ P G + EGAP VV E
Sbjct: 1099 RACIFPRGEM--PTSGELP-TVLRFDRHQSFVEFGNGYALLMNCGGSI--DREHASGFLNESGTMAAWYLEGKLSSDAAFVDNEAAEYQRQQQDSLRQERQGTTAIVTPPSGGREVAEIFTGRGAPSSTGTGDAADGXXXXGDAIGKFLQRLADASGTPSSMLGGLPED-----DPPAFMEAPQRGGAGPAAGVGAGGEGADQEQQQHPPHLVLFARVKGRPFVYCGAVDCVAQEYVWSAGSS-LGRVRFTLALREWHEAATAVVPAGASRRE-EGAPRRSSVVGE 1372
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 152.9 |
| Seed ortholog evalue | 1.8e-34 |
| Seed eggNOG ortholog | 2880.D8LQE1 |
| EggNOG free text desc. | 3'-5'-exoribonuclease activity involved in mature miRNA 3'-end processing |
| EggNOG OGs | KOG2207@1,KOG2207@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 1913 |
| Cds size | 705 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622931094.8171933-UTR-H-elongata_contig69738:246..1102 | 1622931094.8171933-UTR-H-elongata_contig69738:246..1102 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig69738 247..1102 - |
| 1691679695.6851075-UTR-H-elongata_contig69738:246..1102 | 1691679695.6851075-UTR-H-elongata_contig69738:246..1102 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig69738 247..1102 - |
| 1622931094.9023473-UTR-H-elongata_contig69738:2805..3157 | 1622931094.9023473-UTR-H-elongata_contig69738:2805..3157 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig69738 2806..3157 - |
| 1691679695.7377079-UTR-H-elongata_contig69738:2805..3157 | 1691679695.7377079-UTR-H-elongata_contig69738:2805..3157 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig69738 2806..3157 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622931094.832713-CDS-H-elongata_contig69738:1102..1649 | 1622931094.832713-CDS-H-elongata_contig69738:1102..1649 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig69738 1103..1649 - |
| 1691679695.7115233-CDS-H-elongata_contig69738:1102..1649 | 1691679695.7115233-CDS-H-elongata_contig69738:1102..1649 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig69738 1103..1649 - |
| 1622931094.8888724-CDS-H-elongata_contig69738:2647..2805 | 1622931094.8888724-CDS-H-elongata_contig69738:2647..2805 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig69738 2648..2805 - |
| 1691679695.7224562-CDS-H-elongata_contig69738:2647..2805 | 1691679695.7224562-CDS-H-elongata_contig69738:2647..2805 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig69738 2648..2805 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig69738.14622.1 >prot_H-elongata_contig69738.14622.1 ID=prot_H-elongata_contig69738.14622.1|Name=mRNA_H-elongata_contig69738.14622.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=235bp
MSPRQETLSAASSEPPHAALRFDRHLSFVEFHNGYALLMNCLGSVARERE
QASGFLNEDGSYVAWFLQGRLAPERIAAEAGGKARSNAVGRFFERLEVSS
GASSSIWGALPNDCGNAHDAANLNAASRAYGEVVAAGTSRASSATNLDLV
LFARSKGRPFVYCGAVECVAQEYAWNTGSSRLGAVRFILALRDWRRASAR
TAPGGEDDGDGEGAPSFGQVVREGLKSESSPNRF* back to topmRNA from alignment at H-elongata_contig69738:247..3157- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig69738.14622.1 ID=mRNA_H-elongata_contig69738.14622.1|Name=mRNA_H-elongata_contig69738.14622.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2911bp|location=Sequence derived from alignment at H-elongata_contig69738:247..3157- (Himanthalia elongata Himel1 dioecious)
AACCCAACTGGGCAGTAGTGTGGAACTTATGATCGCGATGGTTGTGGGAG
GAGGAGGAGGAGGAGGCTAGACGCTTATACGGAGGCGTTATCATTGTTCA
TGATGGAGGAACAAAGGGAGAGAGAGTGAAAGGCACAGTACGTTCCTCCT
CGAAGCCCCGACCTGAAGAAAGCCCCCTCCCTGTGTGTCCTATATTTTCA
AAAGATTGAAGATATTTTTTCATCAGCGATCGTGAGGGGTTCGGCCCGAA
TCCACCACCCGCACACAACCTATTTGCCTCTTTTCACGCCTTCGATTCTC
TATCTTATCATCTCTTGTTTCCTCTCGTCTCGGCGAGCGGCACAGGGCGT
GCATGTCCCCCCGACAGGAGACGCTCTCCGCCGCCAGCAGTGAGCCGCCC
CACGCCGCCCTTCGCTTCGATCGGCACCTAAGTTTCGTGGAGTTCCATAA
CGGTTACGCGCTGCTGATGAACTGCCTGGGAAGCGTCGCGAGAGAGCGAG
AGCAAGCTAGGTGCGTCGCTTCGCTTCGCTCCCCGCGCGGTAAACATGTC
GCGATAGAGCCCCCCCCCCTCTCTCATTAGTCTAACAGCTACGGTATACA
AAGCTTAACTATATCTCCCTCGCCATCACCATATATTTCCCCTCCCCCCC
CCGCCTCTACGCCCTTCCTCTCGTCTCGTTCTAGTGGAAACCCCTACGGC
AGAGCTCCTGGCCGCCGATTTATTTCTGTGCGTTCCATTTAAATTGTTTT
GTGGTGTATATTCCAGGGCGAGAGAACTCTAGCCGCCGATTTCTCCCTAT
CCTCGTCATCTTCCGAATGGTTCGCAGTTCTTGGAAGCGACCCTGATACA
GGCGTATTTATCTTAGCAATACCCAGTATGGGATGGCATGGTATTGGGGG
GATCTTCGTACTCGTTGTGCTAAGATTTGTCGATGTATGTTGTTTGAAGT
TGACGAAATCCCGGCCCGTTTGAGTTTTGAGTCGTTTAACGATGAGCGGA
TGGGGGTGAGGAATTTTGGACGAGGGGGAACGGTATTAAAAAAAAATCCC
GGGGATGGGACAACGCATCCCCTTTTACCTCACACAGACTGATATGCCTC
AAATGCGCAATTCACTCCACTAGATAGAACGGAATGATGGATAAATTGTA
TCCTCAGAAGGGGCTGTGTTTTTACACTACCACCCCGTGAACTCGGGGGC
ATATTATTCAAATCCCCTCTCCCCCCCTACTCTTTACATTTGACCCACCT
CTTTCACAGCCGCTTACGGATCAAAAATCCTGAACCATGTCATGGCTCGA
ACATCCTTCCTCGCGTCTTTTTCTTTCGCCCTCGTTTTATTTCCAAACCC
AGAGGCTTAAAAAATAATCACATCACATCTCTTGATTTTGATGCAGTCGA
TGCACTGTTAGCCCCCAGGATAAAATCGGATCGCGCGCTCCCTCGGTCTC
GTTCGATGCCGCGCCCCTCCTCCCTACCTCCCTCTACGTCATGACGTCAT
GGCGTCAGTGGCTTTCTGAATGAGGATGGCTCTTATGTGGCGTGGTTCCT
TCAGGGTCGTCTCGCTCCCGAGCGAATCGCCGCCGAAGCCGGCGGAAAGG
CCAGAAGCAATGCCGTCGGCAGATTTTTCGAGCGACTCGAGGTCTCGTCG
GGCGCGTCTTCCTCGATATGGGGGGCCTTGCCCAACGATTGCGGCAATGC
TCACGACGCCGCCAACCTGAATGCGGCTTCCAGAGCATACGGGGAGGTAG
TGGCGGCGGGGACCTCAAGAGCCTCGTCTGCAACGAACCTTGATCTCGTC
CTGTTCGCCAGGTCCAAGGGTCGACCGTTCGTGTACTGCGGGGCCGTGGA
GTGCGTCGCGCAGGAGTACGCGTGGAACACCGGTTCTTCCCGCCTTGGCG
CTGTGCGGTTCATACTTGCCCTGAGAGACTGGCGACGAGCCTCCGCCAGA
ACCGCTCCTGGCGGAGAGGATGACGGTGATGGCGAAGGCGCGCCCTCTTT
CGGACAGGTCGTGCGCGAGGGACTCAAGTCCGAATCGAGTCCGAATCGTT
TTTAACATTTTTATCATGGTCGCTTCGCTACGGTGAGAGTAGGTAGGCGG
TAAGAGGGCGAGGGCTTGGAGGCGCATGAAGCAGGAGTATGGAGGTGGCG
AGCTTATTAAATGCGCCGATGCTGTGATCTCGCACGCGCTTGTGTGTGTG
GACCGTTTGTGCAAGAGCTAACCATATGTGGCAAGATATTGTTGAGGGAA
AATAGCTTATCGTATCCTGCGTGTAAATATTGTACAGCGGACCCCTGTCC
TGAGAGGTAAATTCCGTGAACGAAGGGGGCGGGCATCTACTGTAGGTGGC
CCTTTACATAAGTATCTCGGAGTAAGGAATTGCGCTATATAAGGTACCTA
AAATTATCCCCCACCAGTTGTCTCGATGGAAGGTACTTTGGATACCTTAC
GCAGTGATTTATCTGAAAAAGTTATTTTCAGTATATTATTCAAATACGCG
GCCTAATAGCTGATGCTTCGAGCCCTGTCTTGGAACCATCTGCTAAGCGC
ACATAGTAGCTATAATGCACAGTTGGCATTGTCACAGCACAGCCATGCCT
TGCGCGGCAGGATCAACTTGCAAGCTTCCGGAAAGACACCCCAAATACTC
CAGACTTCACGGGTCACACTTCCCGCAGGGAATTCGGAGGCTACCTGCAC
GGCTTGTGTAGTTACCAGGACCCTACCAGCGACAAATGAAATTTATCGCG
TTTGCCCCGCTTGTTCTTCCAAGGCGGGGGCTGGCACTACCACTGCCTCC
CGTCTTTGCATAGGTCTGATTCCGTAAGGTGTGACACATCGAGGTTGAAT
ACATGTCTTTCTTATATTGGGAGAGAAAAGACGAAGTGCCAAATCAGGCA
ACAGAAAAGGG back to topCoding sequence (CDS) from alignment at H-elongata_contig69738:247..3157- >mRNA_H-elongata_contig69738.14622.1 ID=mRNA_H-elongata_contig69738.14622.1|Name=mRNA_H-elongata_contig69738.14622.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1410bp|location=Sequence derived from alignment at H-elongata_contig69738:247..3157- (Himanthalia elongata Himel1 dioecious)
ATGTCCCCCCGACAGGAGACGCTCTCCGCCGCCAGCAGTGAGCCGCCCCA
CGCCGCCCTTCGCTTCGATCGGCACCTAAGTTTCGTGGAGTTCCATAACG
GTTACGCGCTGCTGATGAACTGCCTGGGAAGCGTCGCGAGAGAGCGAGAG
CAAGCTAGATGTCCCCCCGACAGGAGACGCTCTCCGCCGCCAGCAGTGAG
CCGCCCCACGCCGCCCTTCGCTTCGATCGGCACCTAAGTTTCGTGGAGTT
CCATAACGGTTACGCGCTGCTGATGAACTGCCTGGGAAGCGTCGCGAGAG
AGCGAGAGCAAGCTAGTGGCTTTCTGAATGAGGATGGCTCTTATGTGGCG
TGGTTCCTTCAGGGTCGTCTCGCTCCCGAGCGAATCGCCGCCGAAGCCGG
CGGAAAGGCCAGAAGCAATGCCGTCGGCAGATTTTTCGAGCGACTCGAGG
TCTCGTCGGGCGCGTCTTCCTCGATATGGGGGGCCTTGCCCAACGATTGC
GGCAATGCTCACGACGCCGCCAACCTGAATGCGGCTTCCAGAGCATACGG
GGAGGTAGTGGCGGCGGGGACCTCAAGAGCCTCGTCTGCAACGAACCTTG
ATCTCGTCCTGTTCGCCAGGTCCAAGGGTCGACCGTTCGTGTACTGCGGG
GCCGTGGAGTGCGTCGCGCAGGAGTACGCGTGGAACACCGGTTCTTCCCG
CCTTGGCGCTGTGCGGTTCATACTTGCCCTGAGAGACTGGCGACGAGCCT
CCGCCAGAACCGCTCCTGGCGGAGAGGATGACGGTGATGGCGAAGGCGCG
CCCTCTTTCGGACAGGTCGTGCGCGAGGGACTCAAGTCCGAATCGAGTCC
GAATCGTTTTTAATGGCTTTCTGAATGAGGATGGCTCTTATGTGGCGTGG
TTCCTTCAGGGTCGTCTCGCTCCCGAGCGAATCGCCGCCGAAGCCGGCGG
AAAGGCCAGAAGCAATGCCGTCGGCAGATTTTTCGAGCGACTCGAGGTCT
CGTCGGGCGCGTCTTCCTCGATATGGGGGGCCTTGCCCAACGATTGCGGC
AATGCTCACGACGCCGCCAACCTGAATGCGGCTTCCAGAGCATACGGGGA
GGTAGTGGCGGCGGGGACCTCAAGAGCCTCGTCTGCAACGAACCTTGATC
TCGTCCTGTTCGCCAGGTCCAAGGGTCGACCGTTCGTGTACTGCGGGGCC
GTGGAGTGCGTCGCGCAGGAGTACGCGTGGAACACCGGTTCTTCCCGCCT
TGGCGCTGTGCGGTTCATACTTGCCCTGAGAGACTGGCGACGAGCCTCCG
CCAGAACCGCTCCTGGCGGAGAGGATGACGGTGATGGCGAAGGCGCGCCC
TCTTTCGGACAGGTCGTGCGCGAGGGACTCAAGTCCGAATCGAGTCCGAA
TCGTTTTTAA back to top
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