prot_H-elongata_contig69033.14549.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig69033.14549.1
Unique Nameprot_H-elongata_contig69033.14549.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length119
Homology
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BLAST of mRNA_H-elongata_contig69033.14549.1 vs. uniprot
Match: D7FN62_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN62_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 1.570e-43
Identity = 82/120 (68.33%), Postives = 92/120 (76.67%), Query Frame = 0 
Query:    1 VVDQVFRQLLCEEGGVDLKSLGARGFWCLWRYFSEVNARANALSRSSSPHKNIVAVEDFFSIQGLDTLWETFLRSPDATVVKDAGDLLVQLHLRLREPSDK-QRVWDSFVERCMTTFKDA 119
            VV +VFR LLCEEGGVD  SLG +GFWCLWRY S VN  A ALS S++  KN + V+DFFSIQGLDTLWE F+RS    VVKDAGD L QLHLRLR PSD+   VW SFV+RCMTTF+ A
Sbjct:  416 VVHEVFRHLLCEEGGVDFGSLGPKGFWCLWRYLSVVNMEAKALSGSTAS-KNHIVVQDFFSIQGLDTLWEAFVRSRHPAVVKDAGDFLTQLHLRLRVPSDRVSDVWYSFVKRCMTTFEVA 534
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69033.14549.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FN62_ECTSI1.570e-4368.33USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69033contigH-elongata_contig69033:1988..3195 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69033.14549.1mRNA_H-elongata_contig69033.14549.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig69033 1986..3195 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig69033.14549.1 ID=prot_H-elongata_contig69033.14549.1|Name=mRNA_H-elongata_contig69033.14549.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
VVDQVFRQLLCEEGGVDLKSLGARGFWCLWRYFSEVNARANALSRSSSPH
KNIVAVEDFFSIQGLDTLWETFLRSPDATVVKDAGDLLVQLHLRLREPSD
KQRVWDSFVERCMTTFKDA
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