mRNA_H-elongata_contig69033.14549.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69033.14549.1
Unique NamemRNA_H-elongata_contig69033.14549.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig69033.14549.1 vs. uniprot
Match: D7FN62_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN62_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 1.570e-43
Identity = 82/120 (68.33%), Postives = 92/120 (76.67%), Query Frame = 1 
Query:    1 VVDQVFRQLLCEEGGVDLKSLGARGFWCLWRYFSEVNARANALSRSSSPHKNIVAVEDFFSIQGLDTLWETFLRSPDATVVKDAGDLLVQLHLRLREPSDK-QRVWDSFVERCMTTFKDA 357
            VV +VFR LLCEEGGVD  SLG +GFWCLWRY S VN  A ALS S++  KN + V+DFFSIQGLDTLWE F+RS    VVKDAGD L QLHLRLR PSD+   VW SFV+RCMTTF+ A
Sbjct:  416 VVHEVFRHLLCEEGGVDFGSLGPKGFWCLWRYLSVVNMEAKALSGSTAS-KNHIVVQDFFSIQGLDTLWEAFVRSRHPAVVKDAGDFLTQLHLRLRVPSDRVSDVWYSFVKRCMTTFEVA 534
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69033.14549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FN62_ECTSI1.570e-4368.33USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69033contigH-elongata_contig69033:1986..3195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.1
Seed ortholog evalue4e-38
Seed eggNOG ortholog2880.D7FN62
KEGG koko:K11840,ko:K11869
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1866@2759
Ec32 ortholog descriptionPeptidase C19, ubiquitin carboxyl-terminal hydrolase
Ec32 orthologEc-06_008530.1
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size359
Cds size357
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69033.14549.1prot_H-elongata_contig69033.14549.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69033 1988..3195 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931087.544684-CDS-H-elongata_contig69033:1987..20241622931087.544684-CDS-H-elongata_contig69033:1987..2024Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69033 1988..2024 -
1691679692.862959-CDS-H-elongata_contig69033:1987..20241691679692.862959-CDS-H-elongata_contig69033:1987..2024Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69033 1988..2024 -
1622931087.56411-CDS-H-elongata_contig69033:2438..26051622931087.56411-CDS-H-elongata_contig69033:2438..2605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69033 2439..2605 -
1691679692.8743768-CDS-H-elongata_contig69033:2438..26051691679692.8743768-CDS-H-elongata_contig69033:2438..2605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69033 2439..2605 -
1622931087.5842502-CDS-H-elongata_contig69033:3042..31951622931087.5842502-CDS-H-elongata_contig69033:3042..3195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69033 3043..3195 -
1691679692.883493-CDS-H-elongata_contig69033:3042..31951691679692.883493-CDS-H-elongata_contig69033:3042..3195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69033 3043..3195 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69033.14549.1

>prot_H-elongata_contig69033.14549.1 ID=prot_H-elongata_contig69033.14549.1|Name=mRNA_H-elongata_contig69033.14549.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
VVDQVFRQLLCEEGGVDLKSLGARGFWCLWRYFSEVNARANALSRSSSPH
KNIVAVEDFFSIQGLDTLWETFLRSPDATVVKDAGDLLVQLHLRLREPSD
KQRVWDSFVERCMTTFKDA
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mRNA from alignment at H-elongata_contig69033:1986..3195-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69033.14549.1 ID=mRNA_H-elongata_contig69033.14549.1|Name=mRNA_H-elongata_contig69033.14549.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1210bp|location=Sequence derived from alignment at H-elongata_contig69033:1986..3195- (Himanthalia elongata Himel1 dioecious)
GTGGTTGACCAAGTGTTCCGCCAGCTCTTGTGCGAGGAGGGCGGAGTAGA
CCTAAAGTCTCTTGGCGCTCGGGGCTTTTGGTGTCTCTGGCGCTATTTCT
CGGAGGTTAACGCTCGCGCCAACGCCCTGTCGAGATCGTCGTCACCGCAC
AAGGTGCAAGATAAGGGGAATATACTGGCGGCATTGGCGGCATAACGTGG
TAGAGAGGAGGGGAGGGGGGCGGTGGTGGTGGCGCACTCGTCTGAAGAAA
ATGAAAGTCGGTTTTTCTTGTCTAATGTTTTTTTTGTTACTTTTACCGTA
TGCGAAGGTATCATCCTGTCGTCCTGTCGCTCTCTAGATCGCTGTGGGCG
CGGTGTGGTTCAAGGCCACCTTCTCTTTTAATAACGCCCTTCGAATCTGC
GCGCTGAATAAGCTGTCGATGCACGCACAACGCTCCGGGAAAACACATGT
ACACACGCATACACATATACATTTACGCACGATCCGGGTAGCCCCGCAGG
ATAAACCGAATAACTCCCTTCCTAAGTGATCGTCCTTGGTCCGTTATTTT
TTTCGTGTAATTTATTTTGTTTTTATATTCTACGGCGTAGAATATTGTCG
CGGTAGAGGATTTTTTCAGTATCCAGGGTCTGGACACGCTTTGGGAGACT
TTTCTGAGAAGCCCGGACGCGACCGTGGTAAAGGACGCGGGCGATCTTCT
GGTTCAGCTACACCTCCGCCTCCGGGAGCCCTCGGACAAGCAACGCGTTT
GGGATAGGTGAACGGCCATAATTACTTTCACTTTGTTTTATGAAAAAAGA
GAGCGCTTTCATGTGCGTAATATGCCTTATGTTGCAGCAGTCATTGTCAG
AAAATGACGGAGATAATTTGGTTTCGCCCTCCCCCCTTCCCTCTCCCACA
AGGCCGAGATAAAATATCCGAGGAAAACCTCTCGCCGGGTATATATATAT
ATACCTTCCTTTTTTATACTATATTAATAGTACTTGGTAGTAAACGGTAA
ACGGTACGATGCACAAAGCGCGCATATATTGTTTTGCACTGCATGTAAAA
ACGCAATCTTCTCCCGCTTTCCGCCCTTTGATGCGATGATATTCCCTCGG
GAATCCCCCAATCCTTGGTGGTGCCAAACACAACACAACGCAATCAACAC
AACACAACACAACACAATCAGTTTCGTAGAGCGATGCATGACAACCTTCA
AAGACGCGCT
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Coding sequence (CDS) from alignment at H-elongata_contig69033:1986..3195-

>mRNA_H-elongata_contig69033.14549.1 ID=mRNA_H-elongata_contig69033.14549.1|Name=mRNA_H-elongata_contig69033.14549.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig69033:1986..3195- (Himanthalia elongata Himel1 dioecious)
GTGGTTGACCAAGTGTTCCGCCAGCTCTTGTGCGAGGAGGGCGGAGTAGA
CCTAAAGTCTCTTGGCGCTCGGGGCTTTTGGTGTCTCTGGCGCTATTTCT
CGGAGGTTAACGCTCGCGCCAACGCCCTGTCGAGATCGTCGTCACCGCAC
AAGGTGGTTGACCAAGTGTTCCGCCAGCTCTTGTGCGAGGAGGGCGGAGT
AGACCTAAAGTCTCTTGGCGCTCGGGGCTTTTGGTGTCTCTGGCGCTATT
TCTCGGAGGTTAACGCTCGCGCCAACGCCCTGTCGAGATCGTCGTCACCG
CACAAGAATATTGTCGCGGTAGAGGATTTTTTCAGTATCCAGGGTCTGGA
CACGCTTTGGGAGACTTTTCTGAGAAGCCCGGACGCGACCGTGGTAAAGG
ACGCGGGCGATCTTCTGGTTCAGCTACACCTCCGCCTCCGGGAGCCCTCG
GACAAGCAACGCGTTTGGGATAGAATATTGTCGCGGTAGAGGATTTTTTC
AGTATCCAGGGTCTGGACACGCTTTGGGAGACTTTTCTGAGAAGCCCGGA
CGCGACCGTGGTAAAGGACGCGGGCGATCTTCTGGTTCAGCTACACCTCC
GCCTCCGGGAGCCCTCGGACAAGCAACGCGTTTGGGATAGTTTCGTAGAG
CGATGCATGACAACCTTCAAAGACGCGTTTCGTAGAGCGATGCATGACAA
CCTTCAAAGACGCG
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