prot_H-elongata_contig689.14531.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig689.14531.1
Unique Nameprot_H-elongata_contig689.14531.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length153
Homology
BLAST of mRNA_H-elongata_contig689.14531.1 vs. uniprot
Match: A0A6H5KPT0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPT0_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.500e-23
Identity = 60/153 (39.22%), Postives = 88/153 (57.52%), Query Frame = 0
Query:    1 MVVVIHMDDIIAYTKDHATLYRFVAKLAQKFKLKDMGDVGYYVGCHIMRNRKARELTIDQHFYVESMVETFDVKKASKIPATSGVPT-PSKADEPWNPKVKKEMRRFPYRKAVGVLMWTATMTRLDIASAVCAVTRFSKIPGPAHKKAAMKIM 152
            M++VI++DDI+    D      F+A L +KF  K++G+  ++ GC I R+ +A  L I Q  Y++SMVE FDVK  S+IPAT G    P + DE        E   +P R+A+G +MW +T +R D++ AV AV R +  P   H  A  KI+
Sbjct:    8 MIIVIYVDDILVAGSDE-DFEEFLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDE--------EGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKIL 151          
BLAST of mRNA_H-elongata_contig689.14531.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 3.390e-21
Identity = 59/153 (38.56%), Postives = 87/153 (56.86%), Query Frame = 0
Query:    1 MVVVIHMDDIIAYTKDHATLYRFVAKLAQKFKLKDMGDVGYYVGCHIMRNRKARELTIDQHFYVESMVETFDVKKASKIPATSGVPT-PSKADEPWNPKVKKEMRRFPYRKAVGVLMWTATMTRLDIASAVCAVTRFSKIPGPAHKKAAMKIM 152
            M++VI++DDI+    D       +A L +KF  K++G+  ++ GC I R+ +A  L I Q  Y++SMVE FDVK  S+IPAT G    P + DE        E   +P R+A+G +MW +T +R D++ AV AV R +  P   H  A  KI+
Sbjct:  215 MIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDE--------EGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKIL 358          
BLAST of mRNA_H-elongata_contig689.14531.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 4.970e-21
Identity = 59/153 (38.56%), Postives = 87/153 (56.86%), Query Frame = 0
Query:    1 MVVVIHMDDIIAYTKDHATLYRFVAKLAQKFKLKDMGDVGYYVGCHIMRNRKARELTIDQHFYVESMVETFDVKKASKIPATSGVPT-PSKADEPWNPKVKKEMRRFPYRKAVGVLMWTATMTRLDIASAVCAVTRFSKIPGPAHKKAAMKIM 152
            M++VI++DDI+    D       +A L +KF  K++G+  ++ GC I R+ +A  L I Q  Y++SMVE FDVK  S+IPAT G    P + DE        E   +P R+A+G +MW +T +R D++ AV AV R +  P   H  A  KI+
Sbjct:  928 MIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDE--------EGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKIL 1071          
BLAST of mRNA_H-elongata_contig689.14531.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 4.970e-21
Identity = 59/153 (38.56%), Postives = 86/153 (56.21%), Query Frame = 0
Query:    1 MVVVIHMDDIIAYTKDHATLYRFVAKLAQKFKLKDMGDVGYYVGCHIMRNRKARELTIDQHFYVESMVETFDVKKASKIPATSGVPT-PSKADEPWNPKVKKEMRRFPYRKAVGVLMWTATMTRLDIASAVCAVTRFSKIPGPAHKKAAMKIM 152
            M++VI++DDI+    D       +A L +KF  K++G+  ++ GC I R+ +A  L I Q  Y++SMVE FDVK  S+IPAT G    P + DE        E   +P RKA+G +MW +T +R D++ A  AV R +  P   H  A  KI+
Sbjct: 1037 MIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDE--------EGGEWPVRKAIGSMMWVSTFSRPDVSFAARAVARHAHAPAKRHWDAIQKIL 1180          
BLAST of mRNA_H-elongata_contig689.14531.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 5.060e-21
Identity = 59/153 (38.56%), Postives = 87/153 (56.86%), Query Frame = 0
Query:    1 MVVVIHMDDIIAYTKDHATLYRFVAKLAQKFKLKDMGDVGYYVGCHIMRNRKARELTIDQHFYVESMVETFDVKKASKIPATSGVPT-PSKADEPWNPKVKKEMRRFPYRKAVGVLMWTATMTRLDIASAVCAVTRFSKIPGPAHKKAAMKIM 152
            M++VI++DDI+    D       +A L +KF  K++G+  ++ GC I R+ +A  L I Q  Y++SMVE FDVK  S+IPAT G    P + DE        E   +P R+A+G +MW +T +R D++ AV AV R +  P   H  A  KI+
Sbjct: 1307 MIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDE--------EGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKIL 1450          
BLAST of mRNA_H-elongata_contig689.14531.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 5.070e-21
Identity = 59/153 (38.56%), Postives = 87/153 (56.86%), Query Frame = 0
Query:    1 MVVVIHMDDIIAYTKDHATLYRFVAKLAQKFKLKDMGDVGYYVGCHIMRNRKARELTIDQHFYVESMVETFDVKKASKIPATSGVPT-PSKADEPWNPKVKKEMRRFPYRKAVGVLMWTATMTRLDIASAVCAVTRFSKIPGPAHKKAAMKIM 152
            M++VI++DDI+    D       +A L +KF  K++G+  ++ GC I R+ +A  L I Q  Y++SMVE FDVK  S+IPAT G    P + DE        E   +P R+A+G +MW +T +R D++ AV AV R +  P   H  A  KI+
Sbjct: 1327 MIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDE--------EGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKIL 1470          
BLAST of mRNA_H-elongata_contig689.14531.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 5.090e-21
Identity = 59/153 (38.56%), Postives = 87/153 (56.86%), Query Frame = 0
Query:    1 MVVVIHMDDIIAYTKDHATLYRFVAKLAQKFKLKDMGDVGYYVGCHIMRNRKARELTIDQHFYVESMVETFDVKKASKIPATSGVPT-PSKADEPWNPKVKKEMRRFPYRKAVGVLMWTATMTRLDIASAVCAVTRFSKIPGPAHKKAAMKIM 152
            M++VI++DDI+    D       +A L +KF  K++G+  ++ GC I R+ +A  L I Q  Y++SMVE FDVK  S+IPAT G    P + DE        E   +P R+A+G +MW +T +R D++ AV AV R +  P   H  A  KI+
Sbjct: 1470 MIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDE--------EGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKIL 1613          
BLAST of mRNA_H-elongata_contig689.14531.1 vs. uniprot
Match: A0A6H5K164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K164_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 8.690e-21
Identity = 59/153 (38.56%), Postives = 86/153 (56.21%), Query Frame = 0
Query:    1 MVVVIHMDDIIAYTKDHATLYRFVAKLAQKFKLKDMGDVGYYVGCHIMRNRKARELTIDQHFYVESMVETFDVKKASKIPATSGVPT-PSKADEPWNPKVKKEMRRFPYRKAVGVLMWTATMTRLDIASAVCAVTRFSKIPGPAHKKAAMKIM 152
            M++VI++DDI+    D       +A L +KF  K++G+  ++ GC I R+  A  L I Q  Y++SMVE FDVK  S+IPAT G    P + DE        E   +P R+A+G +MW +T +R D++ AV AV R +  P   H  A  KI+
Sbjct:  563 MIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDE--------EGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKIL 706          
BLAST of mRNA_H-elongata_contig689.14531.1 vs. uniprot
Match: A0A6H5JRS6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS6_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.260e-20
Identity = 59/153 (38.56%), Postives = 87/153 (56.86%), Query Frame = 0
Query:    1 MVVVIHMDDIIAYTKDHATLYRFVAKLAQKFKLKDMGDVGYYVGCHIMRNRKARELTIDQHFYVESMVETFDVKKASKIPATSGVPT-PSKADEPWNPKVKKEMRRFPYRKAVGVLMWTATMTRLDIASAVCAVTRFSKIPGPAHKKAAMKIM 152
            M++VI++DDI+    D       +A L +KF  K++G+  ++ GC I R+ +A  L I Q  Y++SMVE FDVK  S+IPAT G    P + DE        E   +P R+A+G +MW +T +R D++ AV AV R +  P    K A  KI+
Sbjct:   72 MIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDE--------EGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP---VKSAIQKIL 212          
BLAST of mRNA_H-elongata_contig689.14531.1 vs. uniprot
Match: A0A182H216_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182H216_AEDAL)

HSP 1 Score: 94.7 bits (234), Expect = 2.290e-20
Identity = 52/153 (33.99%), Postives = 89/153 (58.17%), Query Frame = 0
Query:    3 VVIHMDDIIAYTKDHATLYRFVAKLAQKFKLKDMGDVGYYVGCHIMRNRKARELTIDQHFYVESMVETFDVKKASKIPATSGVPTPSKADEPWNPKVK---KEMRRFPYRKAVGVLMWTATMTRLDIASAVCAVTRFSKIPGPAHKKAAMKIM 152
            + I++DD + +T D     R    L  +F++KD+G   Y +G  I RN++  EL+IDQ  Y+E +++ F++      P ++   +  + D+   PK +   +EM++ PY++AVG L + A  TR DI+ AV AV++FS  PG  H +A  +I+
Sbjct:    4 ITIYVDDFLIFTNDAKMRKRLKTFLCNRFRMKDLGQAKYCLGLQISRNKERGELSIDQRKYIEDVLDRFNLTDCH--PVSTPFESSERLDKSMTPKSQDEIEEMKKVPYKEAVGCLQYIAQATRPDISFAVNAVSQFSSNPGRKHWEAVKRIL 154          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig689.14531.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPT0_9PHAE2.500e-2339.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KTL3_9PHAE3.390e-2138.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE4.970e-2138.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQW4_9PHAE4.970e-2138.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE5.060e-2138.56Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE5.070e-2138.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE5.090e-2138.56Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5K164_9PHAE8.690e-2138.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRS6_9PHAE1.260e-2038.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A182H216_AEDAL2.290e-2033.99Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..77
e-value: 1.1E-9
score: 38.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig689contigH-elongata_contig689:5976..6434 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig689.14531.1mRNA_H-elongata_contig689.14531.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig689 5925..6911 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig689.14531.1 ID=prot_H-elongata_contig689.14531.1|Name=mRNA_H-elongata_contig689.14531.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=153bp
MVVVIHMDDIIAYTKDHATLYRFVAKLAQKFKLKDMGDVGYYVGCHIMRN
RKARELTIDQHFYVESMVETFDVKKASKIPATSGVPTPSKADEPWNPKVK
KEMRRFPYRKAVGVLMWTATMTRLDIASAVCAVTRFSKIPGPAHKKAAMK
IM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2