prot_H-elongata_contig68712.14507.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig68712.14507.1
Unique Nameprot_H-elongata_contig68712.14507.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length40
Homology
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BLAST of mRNA_H-elongata_contig68712.14507.1 vs. uniprot
Match: D7G3E4_ECTSI (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3E4_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 8.360e-11
Identity = 29/39 (74.36%), Postives = 36/39 (92.31%), Query Frame = 0 
Query:    1 MGSGFVVSEDGLVVTNAHVVERYVDGAVVVTFNGGEQLQ 39
            MGSGFV+S DGLVVTNAHVVER+ DGAVV+T +GG++L+
Sbjct:  178 MGSGFVISGDGLVVTNAHVVERFADGAVVITLDGGQKLK 216
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68712.14507.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3E4_ECTSI8.360e-1174.36PDZ domain-containing protein n=2 Tax=Ectocarpus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.10.10coord: 1..40
e-value: 1.1E-10
score: 43.2
NoneNo IPR availablePFAMPF13365Trypsin_2coord: 2..35
e-value: 3.2E-7
score: 31.4
IPR009003Peptidase S1, PA clanSUPERFAMILY50494Trypsin-like serine proteasescoord: 1..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68712contigH-elongata_contig68712:126..245 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68712.14507.1mRNA_H-elongata_contig68712.14507.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig68712 111..245 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig68712.14507.1 ID=prot_H-elongata_contig68712.14507.1|Name=mRNA_H-elongata_contig68712.14507.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=40bp
MGSGFVVSEDGLVVTNAHVVERYVDGAVVVTFNGGEQLQA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009003Peptidase_S1_PA