mRNA_H-elongata_contig68712.14507.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68712.14507.1
Unique NamemRNA_H-elongata_contig68712.14507.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig68712.14507.1 vs. uniprot
Match: D7G3E4_ECTSI (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3E4_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.320e-12
Identity = 31/44 (70.45%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 DGRQHMGSGFVVSEDGLVVTNAHVVERYVDGAVVVTFNGGEQLQ 132
            DG ++MGSGFV+S DGLVVTNAHVVER+ DGAVV+T +GG++L+
Sbjct:  173 DGVRNMGSGFVISGDGLVVTNAHVVERFADGAVVITLDGGQKLK 216
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BLAST of mRNA_H-elongata_contig68712.14507.1 vs. uniprot
Match: UPI001E33BACD (S1C family serine protease n=1 Tax=Nostoc sp. CHAB 5834 TaxID=2780403 RepID=UPI001E33BACD)

HSP 1 Score: 48.1 bits (113), Expect = 3.920e-5
Identity = 25/45 (55.56%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    1 DGRQHMGSGFVVSEDGLVVTNAHVVERYVDGAVVVTFNGGEQLQA 135
            DG  H GSGF+VS+DGL++TNAHVV+      V V FN G+Q+ A
Sbjct:   54 DGNGH-GSGFLVSQDGLIITNAHVVDGS-PSVVTVVFNDGKQVSA 96
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BLAST of mRNA_H-elongata_contig68712.14507.1 vs. uniprot
Match: A0A7Z0RV68_9GAMM (Periplasmic serine endoprotease DegP-like n=3 Tax=Halomonas TaxID=2745 RepID=A0A7Z0RV68_9GAMM)

HSP 1 Score: 47.8 bits (112), Expect = 5.370e-5
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    7 RQHMGSGFVVSEDGLVVTNAHVVERYVDGAVVVTFNGGEQLQA 135
            RQ +GSGFV+SEDG V+TNAHVVE   +  ++V FN   +L+A
Sbjct:   98 RQSLGSGFVISEDGYVLTNAHVVEDADE--ILVRFNDRRELEA 138
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BLAST of mRNA_H-elongata_contig68712.14507.1 vs. uniprot
Match: A0A1F5IYI0_9BACT (Uncharacterized protein n=1 Tax=Candidatus Dadabacteria bacterium RIFCSPHIGHO2_12_FULL_53_21 TaxID=1797756 RepID=A0A1F5IYI0_9BACT)

HSP 1 Score: 47.8 bits (112), Expect = 5.370e-5
Identity = 21/33 (63.64%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:    7 RQHMGSGFVVSEDGLVVTNAHVVERYVDGAVVV 105
            RQ +GSGF++SEDG VVTN HVVE+ VD +V++
Sbjct:  130 RQGLGSGFIISEDGYVVTNYHVVEKAVDISVIL 162
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BLAST of mRNA_H-elongata_contig68712.14507.1 vs. uniprot
Match: H8GEL5_9PSEU (Trypsin-like serine protease with C-terminal PDZ domain n=3 Tax=Saccharomonospora azurea TaxID=40988 RepID=H8GEL5_9PSEU)

HSP 1 Score: 47.4 bits (111), Expect = 7.330e-5
Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:    4 GRQHMGSGFVVSEDGLVVTNAHVVERYVDGA-VVVTFNGGEQLQA 135
            G  + GSGFV+SEDG ++TN HVVE    G  +VV F  G++ QA
Sbjct:   78 GSANEGSGFVISEDGYILTNNHVVEAAAQGGRIVVAFQNGDRAQA 122
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BLAST of mRNA_H-elongata_contig68712.14507.1 vs. uniprot
Match: A0A895YI35_9ACTN (Trypsin-like peptidase domain-containing protein n=1 Tax=Natronosporangium hydrolyticum TaxID=2811111 RepID=A0A895YI35_9ACTN)

HSP 1 Score: 47.4 bits (111), Expect = 7.340e-5
Identity = 22/39 (56.41%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:   19 GSGFVVSEDGLVVTNAHVVERYVDGAVVVTFNGGEQLQA 135
            GSG ++SEDG+++TNAHVVE   DG V V F+ GE  +A
Sbjct:  135 GSGVIMSEDGVILTNAHVVEPSPDGQVQVRFSNGETGEA 173
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BLAST of mRNA_H-elongata_contig68712.14507.1 vs. uniprot
Match: A0A2G6FYY1_9BACT (PDZ domain-containing protein n=2 Tax=unclassified Bacteria TaxID=49928 RepID=A0A2G6FYY1_9BACT)

HSP 1 Score: 47.4 bits (111), Expect = 7.340e-5
Identity = 23/42 (54.76%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:   10 QHMGSGFVVSEDGLVVTNAHVVERYVDGAVVVTFNGGEQLQA 135
            Q MGSG +VS DG+VVTN+HV+E  V   ++VT + G+Q QA
Sbjct:  128 QSMGSGVIVSTDGMVVTNSHVLEDAVQ--IIVTLSNGQQYQA 167
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BLAST of mRNA_H-elongata_contig68712.14507.1 vs. uniprot
Match: A0A532UZ73_9BACT (2-alkenal reductase n=1 Tax=candidate division LCP-89 bacterium B3_LCP TaxID=2012998 RepID=A0A532UZ73_9BACT)

HSP 1 Score: 47.4 bits (111), Expect = 7.340e-5
Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:   10 QHMGSGFVVSEDGLVVTNAHVVERYVDGAVVVTFNGGEQLQA 135
            +++GSGF++S DGLV+TN HVV    +  ++VT  GGEQ  A
Sbjct:  128 ENLGSGFIISPDGLVITNEHVVHNATE--ILVTMEGGEQYHA 167
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BLAST of mRNA_H-elongata_contig68712.14507.1 vs. uniprot
Match: UPI00191B64F3 (trypsin-like peptidase domain-containing protein n=1 Tax=Psychrobacter immobilis TaxID=498 RepID=UPI00191B64F3)

HSP 1 Score: 47.4 bits (111), Expect = 7.340e-5
Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    4 GRQHMGSGFVVSEDGLVVTNAHVVERYVDGAVVVTFNGGEQLQA 135
            G  ++GSG VVSEDG +VTNAHV+E+  +  +VV FN G + +A
Sbjct:  116 GNTNLGSGVVVSEDGYIVTNAHVIEKADE--IVVAFNDGRKSRA 157
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BLAST of mRNA_H-elongata_contig68712.14507.1 vs. uniprot
Match: UPI000E3446B3 (trypsin-like peptidase domain-containing protein n=1 Tax=Jiangella endophytica TaxID=1623398 RepID=UPI000E3446B3)

HSP 1 Score: 47.4 bits (111), Expect = 7.340e-5
Identity = 21/39 (53.85%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:   19 GSGFVVSEDGLVVTNAHVVERYVDGAVVVTFNGGEQLQA 135
            GSGFV+SEDG V+TN HV+    DGA+ + F  G +L+A
Sbjct:  186 GSGFVISEDGYVITNNHVIATAGDGAIELAFFDGRRLEA 224
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68712.14507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7G3E4_ECTSI1.320e-1270.45PDZ domain-containing protein n=2 Tax=Ectocarpus T... [more]
UPI001E33BACD3.920e-555.56S1C family serine protease n=1 Tax=Nostoc sp. CHAB... [more]
A0A7Z0RV68_9GAMM5.370e-555.81Periplasmic serine endoprotease DegP-like n=3 Tax=... [more]
A0A1F5IYI0_9BACT5.370e-563.64Uncharacterized protein n=1 Tax=Candidatus Dadabac... [more]
H8GEL5_9PSEU7.330e-551.11Trypsin-like serine protease with C-terminal PDZ d... [more]
A0A895YI35_9ACTN7.340e-556.41Trypsin-like peptidase domain-containing protein n... [more]
A0A2G6FYY1_9BACT7.340e-554.76PDZ domain-containing protein n=2 Tax=unclassified... [more]
A0A532UZ73_9BACT7.340e-550.002-alkenal reductase n=1 Tax=candidate division LCP... [more]
UPI00191B64F37.340e-552.27trypsin-like peptidase domain-containing protein n... [more]
UPI000E3446B37.340e-553.85trypsin-like peptidase domain-containing protein n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68712contigH-elongata_contig68712:111..245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue4.3e-08
Seed eggNOG ortholog2880.D7G3E4
Preferred nameHTRA2
KEGG koko:K08669,ko:K08784,ko:K08786
KEGG Pathwayko04210,ko04214,ko04215,ko05012,map04210,map04214,map04215,map05012
GOsGO:0000003,GO:0000785,GO:0001101,GO:0001890,GO:0002682,GO:0002683,GO:0002697,GO:0002698,GO:0002831,GO:0002832,GO:0003006,GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005783,GO:0005789,GO:0005829,GO:0005856,GO:0005886,GO:0005887,GO:0006355,GO:0006357,GO:0006508,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007283,GO:0007399,GO:0007417,GO:0007420,GO:0007610,GO:0007626,GO:0007628,GO:0008150,GO:0008152,GO:0008219,GO:0008233,GO:0008236,GO:0008284,GO:0008344,GO:0008630,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009887,GO:0009889,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009898,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010506,GO:0010507,GO:0010556,GO:0010604,GO:0010623,GO:0010638,GO:0010639,GO:0010646,GO:0010647,GO:0010648,GO:0010821,GO:0010822,GO:0010823,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0012505,GO:0016006,GO:0016020,GO:0016021,GO:0016043,GO:0016241,GO:0016242,GO:0016485,GO:0016540,GO:0016787,GO:0017015,GO:0017171,GO:0019219,GO:0019222,GO:0019538,GO:0019953,GO:0022008,GO:0022411,GO:0022414,GO:0022607,GO:0022617,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030154,GO:0030162,GO:0030163,GO:0030182,GO:0030198,GO:0030510,GO:0030512,GO:0030514,GO:0030534,GO:0030900,GO:0031012,GO:0031224,GO:0031226,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031329,GO:0031330,GO:0031347,GO:0031348,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031984,GO:0032101,GO:0032102,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032526,GO:0032991,GO:0033043,GO:0033554,GO:0033993,GO:0034097,GO:0034599,GO:0034605,GO:0035234,GO:0035456,GO:0035458,GO:0035556,GO:0035631,GO:0040008,GO:0040014,GO:0040036,GO:0042127,GO:0042175,GO:0042221,GO:0042475,GO:0042476,GO:0042802,GO:0042981,GO:0043062,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043235,GO:0043280,GO:0043281,GO:0043900,GO:0043901,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044429,GO:0044432,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0045786,GO:0045862,GO:0048232,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048608,GO:0048609,GO:0048638,GO:0048646,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050678,GO:0050679,GO:0050687,GO:0050688,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051082,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051173,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051259,GO:0051260,GO:0051336,GO:0051345,GO:0051604,GO:0051704,GO:0051716,GO:0051726,GO:0052547,GO:0052548,GO:0060255,GO:0060322,GO:0060548,GO:0060717,GO:0060718,GO:0061458,GO:0065003,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0070206,GO:0070207,GO:0070848,GO:0070887,GO:0071229,GO:0071300,GO:0071310,GO:0071345,GO:0071363,GO:0071396,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0080134,GO:0080135,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090659,GO:0097187,GO:0097190,GO:0097193,GO:0097194,GO:0098552,GO:0098562,GO:0098780,GO:0098796,GO:0098797,GO:0098802,GO:0098827,GO:0140096,GO:1900407,GO:1900408,GO:1901214,GO:1901215,GO:1901524,GO:1901525,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1901701,GO:1902175,GO:1902176,GO:1902494,GO:1902531,GO:1902532,GO:1902882,GO:1902883,GO:1903146,GO:1903147,GO:1903201,GO:1903202,GO:1903506,GO:1903844,GO:1903845,GO:1903867,GO:1904923,GO:1904924,GO:1905286,GO:1905368,GO:1905369,GO:1905370,GO:2000112,GO:2000116,GO:2001056,GO:2001141,GO:2001233,GO:2001234,GO:2001235,GO:2001236,GO:2001238,GO:2001239,GO:2001241,GO:2001242,GO:2001243,GO:2001267,GO:2001269
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGsCOG0265@1,KOG1320@2759
EC3.4.21.108
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03110
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size137
Cds size120
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931081.4895887-UTR-H-elongata_contig68712:110..1251622931081.4895887-UTR-H-elongata_contig68712:110..125Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68712 111..125 +
1691679690.2941265-UTR-H-elongata_contig68712:110..1251691679690.2941265-UTR-H-elongata_contig68712:110..125Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68712 111..125 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931081.5297077-CDS-H-elongata_contig68712:125..2451622931081.5297077-CDS-H-elongata_contig68712:125..245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68712 126..245 +
1691679690.306595-CDS-H-elongata_contig68712:125..2451691679690.306595-CDS-H-elongata_contig68712:125..245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68712 126..245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68712.14507.1prot_H-elongata_contig68712.14507.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68712 126..245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68712.14507.1

>prot_H-elongata_contig68712.14507.1 ID=prot_H-elongata_contig68712.14507.1|Name=mRNA_H-elongata_contig68712.14507.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=40bp
MGSGFVVSEDGLVVTNAHVVERYVDGAVVVTFNGGEQLQA
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mRNA from alignment at H-elongata_contig68712:111..245+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68712.14507.1 ID=mRNA_H-elongata_contig68712.14507.1|Name=mRNA_H-elongata_contig68712.14507.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig68712:111..245+ (Himanthalia elongata Himel1 dioecious)
GACGGCAGGCAGCACATGGGGTCCGGGTTCGTGGTGTCCGAGGACGGCCT
GGTGGTGACCAACGCACACGTGGTGGAGCGATACGTTGACGGCGCGGTGG
TAGTGACCTTCAACGGAGGAGAACAACTACAGGCA
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Coding sequence (CDS) from alignment at H-elongata_contig68712:111..245+

>mRNA_H-elongata_contig68712.14507.1 ID=mRNA_H-elongata_contig68712.14507.1|Name=mRNA_H-elongata_contig68712.14507.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at H-elongata_contig68712:111..245+ (Himanthalia elongata Himel1 dioecious)
ATGGGGTCCGGGTTCGTGGTGTCCGAGGACGGCCTGGTGGTGACCAACGC
ACACGTGGTGGAGCGATACGTTGACGGCGCGGTGGTAGTGACCTTCAACG
GAGGAGAACAACTACAGGCAATGGGGTCCGGGTTCGTGGTGTCCGAGGAC
GGCCTGGTGGTGACCAACGCACACGTGGTGGAGCGATACGTTGACGGCGC
GGTGGTAGTGACCTTCAACGGAGGAGAACAACTACAGGCA
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