prot_H-elongata_contig6708.14317.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig6708.14317.1
Unique Nameprot_H-elongata_contig6708.14317.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length127
Homology
BLAST of mRNA_H-elongata_contig6708.14317.1 vs. uniprot
Match: D8LM46_ECTSI (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM46_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 1.520e-66
Identity = 94/120 (78.33%), Postives = 113/120 (94.17%), Query Frame = 0
Query:    7 VNRLECKGLTYDVNVLLDTNCDIYPVKRGDRLTFVLASTLDLNGKPDDGTYKQQGDEITLADKYEYVMHGRVFKCEHRKDERVELFVSFGGLLLRLTGDQRHVANIEVDSRVYCLLRQNA 126
            VNRLECKG+TYD+++LLDTNCDIYPVK G+RLTFV+ASTLDL+GKPDDGTYK  GDE++LADKYEYVMHGRV++ + +KD +V++F SFGGLL+RLTGDQRHVANIEVDSRV+CLLR+NA
Sbjct:   25 VNRLECKGVTYDMDLLLDTNCDIYPVKEGERLTFVIASTLDLSGKPDDGTYKPLGDEVSLADKYEYVMHGRVYRFDQQKDTKVQVFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRRNA 144          
BLAST of mRNA_H-elongata_contig6708.14317.1 vs. uniprot
Match: A0A836CD84_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD84_9STRA)

HSP 1 Score: 144 bits (364), Expect = 5.510e-42
Identity = 67/119 (56.30%), Postives = 92/119 (77.31%), Query Frame = 0
Query:    7 VNRLECKGLTYDVNVLLDTNCDIYPVKRGDRLTFVLASTLDLNGKPDDGTYKQQGDEITLADKYEYVMHGRVFKCEHRKDERVELFVSFGGLLLRLTGDQRHVANIEVDSRVYCLLRQN 125
            VNRL CK +T+++++LLD N +IY V++ D+L+ VL+STL L+G PDDGTY+    E TLA +YEYVMHGRVFK E     +V++  SFGGLL+RLTG+QRH+ +I +D R+Y L+RQN
Sbjct:   27 VNRLACKAVTFEMDLLLDINSEIYTVRQNDKLSLVLSSTLALDGAPDDGTYRPIEHEETLASRYEYVMHGRVFKYEQLTGTQVQVSASFGGLLMRLTGEQRHLVHISIDQRIYLLIRQN 145          
BLAST of mRNA_H-elongata_contig6708.14317.1 vs. uniprot
Match: A0A7S1BC37_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BC37_9STRA)

HSP 1 Score: 139 bits (351), Expect = 4.600e-40
Identity = 63/121 (52.07%), Postives = 91/121 (75.21%), Query Frame = 0
Query:    5 SAVNRLECKGLTYDVNVLLDTNCDIYPVKRGDRLTFVLASTLDLNGKPDDGTYKQQGDEITLADKYEYVMHGRVFKCEHRKDERVELFVSFGGLLLRLTGDQRHVANIEVDSRVYCLLRQN 125
            S +NR++  G T+  ++LLDTN +IYP+   +++T VL+STL L+G+PDDG Y Q G E T+AD YEYVMHGRVF  +++ D  + + VSFGGLL+RLTGDQRH+ N+  D R+Y L++++
Sbjct:   25 SRINRIQATGTTFQCDLLLDTNSEIYPIAEEEKITIVLSSTLSLDGRPDDGEYDQSG-EPTMADNYEYVMHGRVFDIKYKGDGVIAVHVSFGGLLMRLTGDQRHLENVRADERLYILIKKD 144          
BLAST of mRNA_H-elongata_contig6708.14317.1 vs. uniprot
Match: A0A7S2BWL1_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BWL1_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.520e-38
Identity = 56/118 (47.46%), Postives = 88/118 (74.58%), Query Frame = 0
Query:    7 VNRLECKGLTYDVNVLLDTNCDIYPVKRGDRLTFVLASTLDLNGKPDDGTYKQQGDEITLADKYEYVMHGRVFKCEHRKDERVELFVSFGGLLLRLTGDQRHVANIEVDSRVYCLLRQ 124
            ++RL  +  T+++ +L+D N +++PV   D+++F LA+TL LNG PDDGTY+Q     +L D+YEY MHG+V+   H++ E +E+ VSFGGLL+RL+GDQRH+  IE+D  +YCL+++
Sbjct:   26 IDRLAARAETFEMELLIDINAEVWPVAANDKISFALATTLSLNGDPDDGTYQQYEKGASLLDRYEYAMHGKVYNFNHKEGENIEIDVSFGGLLMRLSGDQRHLVGIELDQSIYCLMKK 143          
BLAST of mRNA_H-elongata_contig6708.14317.1 vs. uniprot
Match: A0A7S2U8S9_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U8S9_9STRA)

HSP 1 Score: 133 bits (334), Expect = 1.980e-37
Identity = 64/120 (53.33%), Postives = 88/120 (73.33%), Query Frame = 0
Query:    7 VNRLECKGLTYDVNVLLDTNCDIYPVKRGDRLTFVLASTLDLNGKPDDG-TYKQQGDEITLADKYEYVMHGRVFKCEHRKDERVELFVSFGGLLLRLTGDQRHVANIEVDSRVYCLLRQN 125
            VNRL   G T++ ++LLD NC+IY V  GD++T VLASTL L+G PDD  +++    E TLAD Y+YVMHGR+F   ++KD  V +  SFGGLL+RLTGDQRH++N+  D R+Y LL+++
Sbjct:   29 VNRLAATGTTFECDLLLDINCEIYKVLEGDKMTLVLASTLSLDGSPDDHFSFQPNSTEPTLADNYDYVMHGRIFDVGYKKDGVVVIAASFGGLLMRLTGDQRHLSNVMPDMRLYVLLKKD 148          
BLAST of mRNA_H-elongata_contig6708.14317.1 vs. uniprot
Match: A0A7S2R5B9_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5B9_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.570e-37
Identity = 60/118 (50.85%), Postives = 87/118 (73.73%), Query Frame = 0
Query:    7 VNRLECKGLTYDVNVLLDTNCDIYPVKRGDRLTFVLASTLDLNGKPDDGTYKQQGDEITLADKYEYVMHGRVFKCEHRKDERVELFVSFGGLLLRLTGDQRHVANIEVDSRVYCLLRQ 124
            +NRL  K  TY++ +L+D NC+++ V   D+++F LAS+L ++G  DDGTY Q  D  +L D+YEY MHGRV+   H+KD+ +E+ VSFGGLLLRLTGD RH+ +IE+D  +YCL+ +
Sbjct:   26 INRLMAKAETYNMELLVDVNCELWQVNEHDKISFALASSLAIDGTADDGTYNQD-DGPSLLDQYEYAMHGRVYGFNHKKDDVIEIDVSFGGLLLRLTGDARHLTSIELDQNIYCLMNK 142          
BLAST of mRNA_H-elongata_contig6708.14317.1 vs. uniprot
Match: A0A1E7FPE4_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=3 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7FPE4_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.100e-36
Identity = 63/119 (52.94%), Postives = 85/119 (71.43%), Query Frame = 0
Query:    7 VNRLECKGLTYDVNVLLDTNCDIYPVKRGDRLTFVLASTLDLNGKPDDGTYKQQGDEITLADKYEYVMHGRVFKCEHRKDERVELFVSFGGLLLRLTGDQRHVANIEVDSRVYCLLRQN 125
            VNR++  G T++ ++LLD NC+IY ++  D++T VLASTL L+G P D        E TLAD YEYVMHGRVF   ++KD    L +SFGGLL+RLTGDQRH+AN+  D R+Y LL+++
Sbjct:   29 VNRIQAVGTTFECDLLLDINCEIYNLREADKVTLVLASTLHLDGSPADHLSYSPSTEPTLADNYEYVMHGRVFDISYKKDGTAVLALSFGGLLMRLTGDQRHLANVLPDMRLYLLLKKD 147          
BLAST of mRNA_H-elongata_contig6708.14317.1 vs. uniprot
Match: A0A7S0CGW6_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CGW6_9STRA)

HSP 1 Score: 129 bits (325), Expect = 4.870e-36
Identity = 61/119 (51.26%), Postives = 86/119 (72.27%), Query Frame = 0
Query:    7 VNRLECKGLTYDVNVLLDTNCDIYPVKRGDRLTFVLASTLDLNGKPDDGTYKQQGDEITLADKYEYVMHGRVFKCEHRKDERVELFVSFGGLLLRLTGDQRHVANIEVDSRVYCLLRQN 125
            VNRL   G T++ ++LLD NC+IY ++  DR+T VLA TL+L+G PDD        E +LAD YEYVMHGRVF+  ++KD  + +  SFGGLL+RLTGDQRH++ I+ D R+Y L++++
Sbjct:   32 VNRLAATGTTFECDLLLDINCEIYSIQESDRITVVLAGTLNLDGTPDDHFSYTGQSEPSLADNYEYVMHGRVFEILYQKDGMISIHASFGGLLMRLTGDQRHLSAIQPDMRLYILIKKD 150          
BLAST of mRNA_H-elongata_contig6708.14317.1 vs. uniprot
Match: B8CGC8_THAPS (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8CGC8_THAPS)

HSP 1 Score: 129 bits (325), Expect = 5.320e-36
Identity = 63/123 (51.22%), Postives = 88/123 (71.54%), Query Frame = 0
Query:    7 VNRLECKGLTYDVNVLLDTNCDIYPVKRGDRLTFVLASTLDLNGKPDDGTY----KQQGDEITLADKYEYVMHGRVFKCEHRKDERVELFVSFGGLLLRLTGDQRHVANIEVDSRVYCLLRQN 125
            VNRL   G T++ ++LLD NC IY +  G+++T VLASTL+L+G PDD T         +E+TLAD YEYVMHGRVF   ++KD  V + +SFGGLL RLTGDQRH++++  D R+Y L++++
Sbjct:   31 VNRLSATGTTFECDLLLDYNCQIYSLLEGEKMTLVLASTLNLDGTPDDHTSYNPATSHNNELTLADNYEYVMHGRVFDVSYKKDGVVVIAISFGGLLCRLTGDQRHLSSVLPDMRLYVLIKKD 153          
BLAST of mRNA_H-elongata_contig6708.14317.1 vs. uniprot
Match: K0RE90_THAOC (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RE90_THAOC)

HSP 1 Score: 129 bits (324), Expect = 7.110e-36
Identity = 65/123 (52.85%), Postives = 87/123 (70.73%), Query Frame = 0
Query:    7 VNRLECKGLTYDVNVLLDTNCDIYPVKRGDRLTFVLASTLDLNGKPDDGTYKQQG----DEITLADKYEYVMHGRVFKCEHRKDERVELFVSFGGLLLRLTGDQRHVANIEVDSRVYCLLRQN 125
            VNRL  KG T+D ++LLD NC IY +   +++T VLASTL+L+G PDD T         +E TLAD YEYVMHGRVF   ++KD  V + +SFGGLL RLTGDQRH++NI  D R++ L++++
Sbjct:   29 VNRLSAKGTTFDCDLLLDYNCQIYSLHEEEKMTLVLASTLNLDGSPDDHTSYNPAASFKNEPTLADNYEYVMHGRVFDVSYKKDGVVVIAISFGGLLCRLTGDQRHLSNILPDMRLFILIKKD 151          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6708.14317.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM46_ECTSI1.520e-6678.33DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A836CD84_9STRA5.510e-4256.30DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S1BC37_9STRA4.600e-4052.07DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S2BWL1_9STRA1.520e-3847.46DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S2U8S9_9STRA1.980e-3753.33DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S2R5B9_9STRA2.570e-3750.85DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A1E7FPE4_9STRA1.100e-3652.94DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S0CGW6_9STRA4.870e-3651.26DNA-directed RNA polymerases I, II, and III subuni... [more]
B8CGC8_THAPS5.320e-3651.22DNA-directed RNA polymerases I, II, and III subuni... [more]
K0RE90_THAOC7.110e-3652.85DNA-directed RNA polymerases I, II, and III subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005570RNA polymerase, Rpb8SMARTSM00658rpol8neucoord: 3..124
e-value: 2.2E-28
score: 110.3
IPR005570RNA polymerase, Rpb8PFAMPF03870RNA_pol_Rpb8coord: 6..123
e-value: 9.7E-39
score: 132.7
IPR005570RNA polymerase, Rpb8PIRSFPIRSF000779RPB8coord: 4..126
e-value: 1.2E-35
score: 120.7
IPR005570RNA polymerase, Rpb8PANTHERPTHR10917DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3coord: 6..124
NoneNo IPR availableGENE3D2.40.50.140coord: 3..126
e-value: 3.2E-39
score: 136.0
NoneNo IPR availablePANTHERPTHR10917:SF0DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3coord: 6..124
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 6..123

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6708contigH-elongata_contig6708:8415..9873 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6708.14317.1mRNA_H-elongata_contig6708.14317.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig6708 7587..9873 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig6708.14317.1 ID=prot_H-elongata_contig6708.14317.1|Name=mRNA_H-elongata_contig6708.14317.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
MPLVSAVNRLECKGLTYDVNVLLDTNCDIYPVKRGDRLTFVLASTLDLNG
KPDDGTYKQQGDEITLADKYEYVMHGRVFKCEHRKDERVELFVSFGGLLL
RLTGDQRHVANIEVDSRVYCLLRQNA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005570RNA_pol_Rpb8
IPR012340NA-bd_OB-fold