prot_H-elongata_contig6708.14317.1 (polypeptide) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig6708.14317.1 vs. uniprot
Match: D8LM46_ECTSI (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM46_ECTSI) HSP 1 Score: 206 bits (525), Expect = 1.520e-66 Identity = 94/120 (78.33%), Postives = 113/120 (94.17%), Query Frame = 0
Query: 7 VNRLECKGLTYDVNVLLDTNCDIYPVKRGDRLTFVLASTLDLNGKPDDGTYKQQGDEITLADKYEYVMHGRVFKCEHRKDERVELFVSFGGLLLRLTGDQRHVANIEVDSRVYCLLRQNA 126
VNRLECKG+TYD+++LLDTNCDIYPVK G+RLTFV+ASTLDL+GKPDDGTYK GDE++LADKYEYVMHGRV++ + +KD +V++F SFGGLL+RLTGDQRHVANIEVDSRV+CLLR+NA
Sbjct: 25 VNRLECKGVTYDMDLLLDTNCDIYPVKEGERLTFVIASTLDLSGKPDDGTYKPLGDEVSLADKYEYVMHGRVYRFDQQKDTKVQVFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRRNA 144
BLAST of mRNA_H-elongata_contig6708.14317.1 vs. uniprot
Match: A0A836CD84_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD84_9STRA) HSP 1 Score: 144 bits (364), Expect = 5.510e-42 Identity = 67/119 (56.30%), Postives = 92/119 (77.31%), Query Frame = 0
Query: 7 VNRLECKGLTYDVNVLLDTNCDIYPVKRGDRLTFVLASTLDLNGKPDDGTYKQQGDEITLADKYEYVMHGRVFKCEHRKDERVELFVSFGGLLLRLTGDQRHVANIEVDSRVYCLLRQN 125
VNRL CK +T+++++LLD N +IY V++ D+L+ VL+STL L+G PDDGTY+ E TLA +YEYVMHGRVFK E +V++ SFGGLL+RLTG+QRH+ +I +D R+Y L+RQN
Sbjct: 27 VNRLACKAVTFEMDLLLDINSEIYTVRQNDKLSLVLSSTLALDGAPDDGTYRPIEHEETLASRYEYVMHGRVFKYEQLTGTQVQVSASFGGLLMRLTGEQRHLVHISIDQRIYLLIRQN 145
BLAST of mRNA_H-elongata_contig6708.14317.1 vs. uniprot
Match: A0A7S1BC37_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BC37_9STRA) HSP 1 Score: 139 bits (351), Expect = 4.600e-40 Identity = 63/121 (52.07%), Postives = 91/121 (75.21%), Query Frame = 0
Query: 5 SAVNRLECKGLTYDVNVLLDTNCDIYPVKRGDRLTFVLASTLDLNGKPDDGTYKQQGDEITLADKYEYVMHGRVFKCEHRKDERVELFVSFGGLLLRLTGDQRHVANIEVDSRVYCLLRQN 125
S +NR++ G T+ ++LLDTN +IYP+ +++T VL+STL L+G+PDDG Y Q G E T+AD YEYVMHGRVF +++ D + + VSFGGLL+RLTGDQRH+ N+ D R+Y L++++
Sbjct: 25 SRINRIQATGTTFQCDLLLDTNSEIYPIAEEEKITIVLSSTLSLDGRPDDGEYDQSG-EPTMADNYEYVMHGRVFDIKYKGDGVIAVHVSFGGLLMRLTGDQRHLENVRADERLYILIKKD 144
BLAST of mRNA_H-elongata_contig6708.14317.1 vs. uniprot
Match: A0A7S2BWL1_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BWL1_9STRA) HSP 1 Score: 135 bits (341), Expect = 1.520e-38 Identity = 56/118 (47.46%), Postives = 88/118 (74.58%), Query Frame = 0
Query: 7 VNRLECKGLTYDVNVLLDTNCDIYPVKRGDRLTFVLASTLDLNGKPDDGTYKQQGDEITLADKYEYVMHGRVFKCEHRKDERVELFVSFGGLLLRLTGDQRHVANIEVDSRVYCLLRQ 124
++RL + T+++ +L+D N +++PV D+++F LA+TL LNG PDDGTY+Q +L D+YEY MHG+V+ H++ E +E+ VSFGGLL+RL+GDQRH+ IE+D +YCL+++
Sbjct: 26 IDRLAARAETFEMELLIDINAEVWPVAANDKISFALATTLSLNGDPDDGTYQQYEKGASLLDRYEYAMHGKVYNFNHKEGENIEIDVSFGGLLMRLSGDQRHLVGIELDQSIYCLMKK 143
BLAST of mRNA_H-elongata_contig6708.14317.1 vs. uniprot
Match: A0A7S2U8S9_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U8S9_9STRA) HSP 1 Score: 133 bits (334), Expect = 1.980e-37 Identity = 64/120 (53.33%), Postives = 88/120 (73.33%), Query Frame = 0
Query: 7 VNRLECKGLTYDVNVLLDTNCDIYPVKRGDRLTFVLASTLDLNGKPDDG-TYKQQGDEITLADKYEYVMHGRVFKCEHRKDERVELFVSFGGLLLRLTGDQRHVANIEVDSRVYCLLRQN 125
VNRL G T++ ++LLD NC+IY V GD++T VLASTL L+G PDD +++ E TLAD Y+YVMHGR+F ++KD V + SFGGLL+RLTGDQRH++N+ D R+Y LL+++
Sbjct: 29 VNRLAATGTTFECDLLLDINCEIYKVLEGDKMTLVLASTLSLDGSPDDHFSFQPNSTEPTLADNYDYVMHGRIFDVGYKKDGVVVIAASFGGLLMRLTGDQRHLSNVMPDMRLYVLLKKD 148
BLAST of mRNA_H-elongata_contig6708.14317.1 vs. uniprot
Match: A0A7S2R5B9_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5B9_9STRA) HSP 1 Score: 132 bits (333), Expect = 2.570e-37 Identity = 60/118 (50.85%), Postives = 87/118 (73.73%), Query Frame = 0
Query: 7 VNRLECKGLTYDVNVLLDTNCDIYPVKRGDRLTFVLASTLDLNGKPDDGTYKQQGDEITLADKYEYVMHGRVFKCEHRKDERVELFVSFGGLLLRLTGDQRHVANIEVDSRVYCLLRQ 124
+NRL K TY++ +L+D NC+++ V D+++F LAS+L ++G DDGTY Q D +L D+YEY MHGRV+ H+KD+ +E+ VSFGGLLLRLTGD RH+ +IE+D +YCL+ +
Sbjct: 26 INRLMAKAETYNMELLVDVNCELWQVNEHDKISFALASSLAIDGTADDGTYNQD-DGPSLLDQYEYAMHGRVYGFNHKKDDVIEIDVSFGGLLLRLTGDARHLTSIELDQNIYCLMNK 142
BLAST of mRNA_H-elongata_contig6708.14317.1 vs. uniprot
Match: A0A1E7FPE4_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=3 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7FPE4_9STRA) HSP 1 Score: 131 bits (329), Expect = 1.100e-36 Identity = 63/119 (52.94%), Postives = 85/119 (71.43%), Query Frame = 0
Query: 7 VNRLECKGLTYDVNVLLDTNCDIYPVKRGDRLTFVLASTLDLNGKPDDGTYKQQGDEITLADKYEYVMHGRVFKCEHRKDERVELFVSFGGLLLRLTGDQRHVANIEVDSRVYCLLRQN 125
VNR++ G T++ ++LLD NC+IY ++ D++T VLASTL L+G P D E TLAD YEYVMHGRVF ++KD L +SFGGLL+RLTGDQRH+AN+ D R+Y LL+++
Sbjct: 29 VNRIQAVGTTFECDLLLDINCEIYNLREADKVTLVLASTLHLDGSPADHLSYSPSTEPTLADNYEYVMHGRVFDISYKKDGTAVLALSFGGLLMRLTGDQRHLANVLPDMRLYLLLKKD 147
BLAST of mRNA_H-elongata_contig6708.14317.1 vs. uniprot
Match: A0A7S0CGW6_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CGW6_9STRA) HSP 1 Score: 129 bits (325), Expect = 4.870e-36 Identity = 61/119 (51.26%), Postives = 86/119 (72.27%), Query Frame = 0
Query: 7 VNRLECKGLTYDVNVLLDTNCDIYPVKRGDRLTFVLASTLDLNGKPDDGTYKQQGDEITLADKYEYVMHGRVFKCEHRKDERVELFVSFGGLLLRLTGDQRHVANIEVDSRVYCLLRQN 125
VNRL G T++ ++LLD NC+IY ++ DR+T VLA TL+L+G PDD E +LAD YEYVMHGRVF+ ++KD + + SFGGLL+RLTGDQRH++ I+ D R+Y L++++
Sbjct: 32 VNRLAATGTTFECDLLLDINCEIYSIQESDRITVVLAGTLNLDGTPDDHFSYTGQSEPSLADNYEYVMHGRVFEILYQKDGMISIHASFGGLLMRLTGDQRHLSAIQPDMRLYILIKKD 150
BLAST of mRNA_H-elongata_contig6708.14317.1 vs. uniprot
Match: B8CGC8_THAPS (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8CGC8_THAPS) HSP 1 Score: 129 bits (325), Expect = 5.320e-36 Identity = 63/123 (51.22%), Postives = 88/123 (71.54%), Query Frame = 0
Query: 7 VNRLECKGLTYDVNVLLDTNCDIYPVKRGDRLTFVLASTLDLNGKPDDGTY----KQQGDEITLADKYEYVMHGRVFKCEHRKDERVELFVSFGGLLLRLTGDQRHVANIEVDSRVYCLLRQN 125
VNRL G T++ ++LLD NC IY + G+++T VLASTL+L+G PDD T +E+TLAD YEYVMHGRVF ++KD V + +SFGGLL RLTGDQRH++++ D R+Y L++++
Sbjct: 31 VNRLSATGTTFECDLLLDYNCQIYSLLEGEKMTLVLASTLNLDGTPDDHTSYNPATSHNNELTLADNYEYVMHGRVFDVSYKKDGVVVIAISFGGLLCRLTGDQRHLSSVLPDMRLYVLIKKD 153
BLAST of mRNA_H-elongata_contig6708.14317.1 vs. uniprot
Match: K0RE90_THAOC (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RE90_THAOC) HSP 1 Score: 129 bits (324), Expect = 7.110e-36 Identity = 65/123 (52.85%), Postives = 87/123 (70.73%), Query Frame = 0
Query: 7 VNRLECKGLTYDVNVLLDTNCDIYPVKRGDRLTFVLASTLDLNGKPDDGTYKQQG----DEITLADKYEYVMHGRVFKCEHRKDERVELFVSFGGLLLRLTGDQRHVANIEVDSRVYCLLRQN 125
VNRL KG T+D ++LLD NC IY + +++T VLASTL+L+G PDD T +E TLAD YEYVMHGRVF ++KD V + +SFGGLL RLTGDQRH++NI D R++ L++++
Sbjct: 29 VNRLSAKGTTFDCDLLLDYNCQIYSLHEEEKMTLVLASTLNLDGSPDDHTSYNPAASFKNEPTLADNYEYVMHGRVFDVSYKKDGVVVIAISFGGLLCRLTGDQRHLSNILPDMRLFILIKKD 151 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6708.14317.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_H-elongata_contig6708.14317.1 ID=prot_H-elongata_contig6708.14317.1|Name=mRNA_H-elongata_contig6708.14317.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bpback to top |