prot_H-elongata_contig66645.14266.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig66645.14266.1
Unique Nameprot_H-elongata_contig66645.14266.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length103
Homology
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BLAST of mRNA_H-elongata_contig66645.14266.1 vs. uniprot
Match: D7G1G1_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G1_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 1.180e-18
Identity = 80/103 (77.67%), Postives = 84/103 (81.55%), Query Frame = 0 
Query:    1 RYSYGHQDGLWEYNLMHDCGYYGFDPHDDSDNLRIHNNIVYNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNACIALFESFG 103
            +YSYGHQDGLWEYN M + GYYGFDPHDDSDNLRIHNNIVY N           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    G+ACIA+FESFG
Sbjct:  256 QYSYGHQDGLWEYNTMRNSGYYGFDPHDDSDNLRIHNNIVYENGNHGIIASKRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTGSGSACIAIFESFG 358
[Close]
BLAST of mRNA_H-elongata_contig66645.14266.1 vs. uniprot
Match: D8LKL1_ECTSI (Mannuronan C-5 epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL1_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 3.220e-15
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 0 
Query:    2 YSYGHQDGLWEYNLMHDCGYYGFDPHDDSDNLRIHNNIVY 41
            Y+YGHQDGLWEYNLMH+   YGFDPHDDSDNLRIHNNIV+
Sbjct:  189 YTYGHQDGLWEYNLMHENAKYGFDPHDDSDNLRIHNNIVW 228
[Close]
BLAST of mRNA_H-elongata_contig66645.14266.1 vs. uniprot
Match: A0A6H5K9I9_9PHAE (MEP6 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9I9_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 4.080e-15
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 0 
Query:    2 YSYGHQDGLWEYNLMHDCGYYGFDPHDDSDNLRIHNNIVY 41
            Y+YGHQDGLWEYNLMH+   YGFDPHDDSDNLRIHNNIV+
Sbjct:  261 YTYGHQDGLWEYNLMHENAKYGFDPHDDSDNLRIHNNIVW 300
[Close]
BLAST of mRNA_H-elongata_contig66645.14266.1 vs. uniprot
Match: D8LL67_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL67_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 4.300e-10
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 0 
Query:    4 YGHQDGLWEYNLMHDCGYYGFDPHDDSDNLRIHNNIVYNN 43
            YGH  GLW  NLMHD  +YGFDPHDDSD L IHNN+V+NN
Sbjct:  435 YGHLGGLWNGNLMHDNEWYGFDPHDDSDYLTIHNNLVWNN 474
[Close]
BLAST of mRNA_H-elongata_contig66645.14266.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 7.970e-10
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 0 
Query:    2 YSYGHQDGLWEYNLMHDCGYYGFDPHDDSDNLRIHNNIVYNN 43
            YSYGHQ G+W+ N+M D   YGFDPHDDSD+L I NNIVY N
Sbjct:  399 YSYGHQGGVWDSNIMRDNIQYGFDPHDDSDDLTISNNIVYGN 440
[Close]
BLAST of mRNA_H-elongata_contig66645.14266.1 vs. uniprot
Match: A0A6H5KES9_9PHAE (MEP22b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KES9_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.670e-9
Identity = 29/42 (69.05%), Postives = 31/42 (73.81%), Query Frame = 0 
Query:    2 YSYGHQDGLWEYNLMHDCGYYGFDPHDDSDNLRIHNNIVYNN 43
            Y+YGHQ G W  N MHD   YGFDPHDDSD L IH+N VYNN
Sbjct:  158 YTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNN 199
[Close]
BLAST of mRNA_H-elongata_contig66645.14266.1 vs. uniprot
Match: D8LHA3_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA3_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 2.070e-9
Identity = 29/42 (69.05%), Postives = 31/42 (73.81%), Query Frame = 0 
Query:    2 YSYGHQDGLWEYNLMHDCGYYGFDPHDDSDNLRIHNNIVYNN 43
            Y+YGHQ G W  N MHD   YGFDPHDDSD L IH+N VYNN
Sbjct:   60 YTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNN 101
[Close]
BLAST of mRNA_H-elongata_contig66645.14266.1 vs. uniprot
Match: A0A6H5JU98_9PHAE (MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.360e-9
Identity = 29/42 (69.05%), Postives = 31/42 (73.81%), Query Frame = 0 
Query:    2 YSYGHQDGLWEYNLMHDCGYYGFDPHDDSDNLRIHNNIVYNN 43
            Y+YGHQ G W  N MHD   YGFDPHDDSD L IH+N VYNN
Sbjct:  267 YTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNN 308
[Close]
BLAST of mRNA_H-elongata_contig66645.14266.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 2.600e-9
Identity = 29/42 (69.05%), Postives = 31/42 (73.81%), Query Frame = 0 
Query:    2 YSYGHQDGLWEYNLMHDCGYYGFDPHDDSDNLRIHNNIVYNN 43
            Y+YGHQ G W  N MHD   YGFDPHDDSD L IH+N VYNN
Sbjct:  264 YTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNN 305
[Close]
BLAST of mRNA_H-elongata_contig66645.14266.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 2.710e-9
Identity = 29/42 (69.05%), Postives = 31/42 (73.81%), Query Frame = 0 
Query:    2 YSYGHQDGLWEYNLMHDCGYYGFDPHDDSDNLRIHNNIVYNN 43
            Y+YGHQ G W  N MHD   YGFDPHDDSD L IH+N VYNN
Sbjct:  264 YTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNN 305
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66645.14266.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1G1_ECTSI1.180e-1877.67Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D8LKL1_ECTSI3.220e-1585.00Mannuronan C-5 epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5K9I9_9PHAE4.080e-1585.00MEP6 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LL67_ECTSI4.300e-1072.50Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G8D9_ECTSI7.970e-1069.05Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A6H5KES9_9PHAE1.670e-969.05MEP22b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
D8LHA3_ECTSI2.070e-969.05Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JU98_9PHAE2.360e-969.05MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FXE5_ECTSI2.600e-969.05Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G339_ECTSI2.710e-969.05Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]

Pages

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006626Parallel beta-helix repeatSMARTSM00710pbh1coord: 54..76
e-value: 0.38
score: 19.8
coord: 78..100
e-value: 6.0
score: 15.8
coord: 30..52
e-value: 3.8
score: 16.5
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 1..103
e-value: 2.6E-34
score: 120.7
IPR039448Right handed beta helix domainPFAMPF13229Beta_helixcoord: 12..100
e-value: 1.4E-12
score: 47.7
IPR022441Parallel beta-helix repeat-2TIGRFAMTIGR03804TIGR03804coord: 53..93
e-value: 2.5E-8
score: 31.4
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 9..93

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66645contigH-elongata_contig66645:44..2298 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66645.14266.1mRNA_H-elongata_contig66645.14266.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig66645 44..2298 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig66645.14266.1 ID=prot_H-elongata_contig66645.14266.1|Name=mRNA_H-elongata_contig66645.14266.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
RYSYGHQDGLWEYNLMHDCGYYGFDPHDDSDNLRIHNNIVYNNGNHGIIA
SKRCNDVSIQNNVVYDNKGHGIMLHRSCDDGIIRNNIITSNGNACIALFE
SFG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006626PbH1
IPR012334Pectin_lyas_fold
IPR039448Beta_helix
IPR022441Para_beta_helix_rpt-2
IPR011050Pectin_lyase_fold/virulence