mRNA_H-elongata_contig66645.14266.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66645.14266.1
Unique NamemRNA_H-elongata_contig66645.14266.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig66645.14266.1 vs. uniprot
Match: D7G1G1_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G1_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 1.180e-18
Identity = 80/103 (77.67%), Postives = 84/103 (81.55%), Query Frame = 1 
Query:    1 RYSYGHQDGLWEYNLMHDCGYYGFDPHDDSDNLRIHNNIVYNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNACIALFESFG 309
            +YSYGHQDGLWEYN M + GYYGFDPHDDSDNLRIHNNIVY N           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    G+ACIA+FESFG
Sbjct:  256 QYSYGHQDGLWEYNTMRNSGYYGFDPHDDSDNLRIHNNIVYENGNHGIIASKRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTGSGSACIAIFESFG 358
[Close]
BLAST of mRNA_H-elongata_contig66645.14266.1 vs. uniprot
Match: D8LKL1_ECTSI (Mannuronan C-5 epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL1_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 3.220e-15
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    4 YSYGHQDGLWEYNLMHDCGYYGFDPHDDSDNLRIHNNIVY 123
            Y+YGHQDGLWEYNLMH+   YGFDPHDDSDNLRIHNNIV+
Sbjct:  189 YTYGHQDGLWEYNLMHENAKYGFDPHDDSDNLRIHNNIVW 228
[Close]
BLAST of mRNA_H-elongata_contig66645.14266.1 vs. uniprot
Match: A0A6H5K9I9_9PHAE (MEP6 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9I9_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 4.080e-15
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    4 YSYGHQDGLWEYNLMHDCGYYGFDPHDDSDNLRIHNNIVY 123
            Y+YGHQDGLWEYNLMH+   YGFDPHDDSDNLRIHNNIV+
Sbjct:  261 YTYGHQDGLWEYNLMHENAKYGFDPHDDSDNLRIHNNIVW 300
[Close]
BLAST of mRNA_H-elongata_contig66645.14266.1 vs. uniprot
Match: D8LL67_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL67_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 4.300e-10
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:   10 YGHQDGLWEYNLMHDCGYYGFDPHDDSDNLRIHNNIVYNN 129
            YGH  GLW  NLMHD  +YGFDPHDDSD L IHNN+V+NN
Sbjct:  435 YGHLGGLWNGNLMHDNEWYGFDPHDDSDYLTIHNNLVWNN 474
[Close]
BLAST of mRNA_H-elongata_contig66645.14266.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 7.970e-10
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    4 YSYGHQDGLWEYNLMHDCGYYGFDPHDDSDNLRIHNNIVYNN 129
            YSYGHQ G+W+ N+M D   YGFDPHDDSD+L I NNIVY N
Sbjct:  399 YSYGHQGGVWDSNIMRDNIQYGFDPHDDSDDLTISNNIVYGN 440
[Close]
BLAST of mRNA_H-elongata_contig66645.14266.1 vs. uniprot
Match: A0A6H5KES9_9PHAE (MEP22b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KES9_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.670e-9
Identity = 29/42 (69.05%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    4 YSYGHQDGLWEYNLMHDCGYYGFDPHDDSDNLRIHNNIVYNN 129
            Y+YGHQ G W  N MHD   YGFDPHDDSD L IH+N VYNN
Sbjct:  158 YTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNN 199
[Close]
BLAST of mRNA_H-elongata_contig66645.14266.1 vs. uniprot
Match: D8LHA3_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA3_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 2.070e-9
Identity = 29/42 (69.05%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    4 YSYGHQDGLWEYNLMHDCGYYGFDPHDDSDNLRIHNNIVYNN 129
            Y+YGHQ G W  N MHD   YGFDPHDDSD L IH+N VYNN
Sbjct:   60 YTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNN 101
[Close]
BLAST of mRNA_H-elongata_contig66645.14266.1 vs. uniprot
Match: A0A6H5JU98_9PHAE (MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.360e-9
Identity = 29/42 (69.05%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    4 YSYGHQDGLWEYNLMHDCGYYGFDPHDDSDNLRIHNNIVYNN 129
            Y+YGHQ G W  N MHD   YGFDPHDDSD L IH+N VYNN
Sbjct:  267 YTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNN 308
[Close]
BLAST of mRNA_H-elongata_contig66645.14266.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 2.600e-9
Identity = 29/42 (69.05%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    4 YSYGHQDGLWEYNLMHDCGYYGFDPHDDSDNLRIHNNIVYNN 129
            Y+YGHQ G W  N MHD   YGFDPHDDSD L IH+N VYNN
Sbjct:  264 YTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNN 305
[Close]
BLAST of mRNA_H-elongata_contig66645.14266.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 2.710e-9
Identity = 29/42 (69.05%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    4 YSYGHQDGLWEYNLMHDCGYYGFDPHDDSDNLRIHNNIVYNN 129
            Y+YGHQ G W  N MHD   YGFDPHDDSD L IH+N VYNN
Sbjct:  264 YTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNN 305
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66645.14266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1G1_ECTSI1.180e-1877.67Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D8LKL1_ECTSI3.220e-1585.00Mannuronan C-5 epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5K9I9_9PHAE4.080e-1585.00MEP6 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LL67_ECTSI4.300e-1072.50Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G8D9_ECTSI7.970e-1069.05Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A6H5KES9_9PHAE1.670e-969.05MEP22b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
D8LHA3_ECTSI2.070e-969.05Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JU98_9PHAE2.360e-969.05MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FXE5_ECTSI2.600e-969.05Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G339_ECTSI2.710e-969.05Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66645contigH-elongata_contig66645:44..2298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue2.2e-08
Seed eggNOG ortholog2880.D7G8D9
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.2.1.37
COG Functional cat.U
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons4
Model size309
Cds size309
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66645.14266.1prot_H-elongata_contig66645.14266.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66645 44..2298 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931056.1763546-CDS-H-elongata_contig66645:43..1021622931056.1763546-CDS-H-elongata_contig66645:43..102Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66645 44..102 +
1691679680.0218334-CDS-H-elongata_contig66645:43..1021691679680.0218334-CDS-H-elongata_contig66645:43..102Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66645 44..102 +
1622931056.1991806-CDS-H-elongata_contig66645:556..6271622931056.1991806-CDS-H-elongata_contig66645:556..627Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66645 557..627 +
1691679680.0367372-CDS-H-elongata_contig66645:556..6271691679680.0367372-CDS-H-elongata_contig66645:556..627Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66645 557..627 +
1622931056.220407-CDS-H-elongata_contig66645:1735..17631622931056.220407-CDS-H-elongata_contig66645:1735..1763Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66645 1736..1763 +
1691679680.047683-CDS-H-elongata_contig66645:1735..17631691679680.047683-CDS-H-elongata_contig66645:1735..1763Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66645 1736..1763 +
1622931056.2403476-CDS-H-elongata_contig66645:2147..22981622931056.2403476-CDS-H-elongata_contig66645:2147..2298Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66645 2148..2298 +
1691679680.061549-CDS-H-elongata_contig66645:2147..22981691679680.061549-CDS-H-elongata_contig66645:2147..2298Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66645 2148..2298 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66645.14266.1

>prot_H-elongata_contig66645.14266.1 ID=prot_H-elongata_contig66645.14266.1|Name=mRNA_H-elongata_contig66645.14266.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
RYSYGHQDGLWEYNLMHDCGYYGFDPHDDSDNLRIHNNIVYNNGNHGIIA
SKRCNDVSIQNNVVYDNKGHGIMLHRSCDDGIIRNNIITSNGNACIALFE
SFG
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mRNA from alignment at H-elongata_contig66645:44..2298+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66645.14266.1 ID=mRNA_H-elongata_contig66645.14266.1|Name=mRNA_H-elongata_contig66645.14266.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2255bp|location=Sequence derived from alignment at H-elongata_contig66645:44..2298+ (Himanthalia elongata Himel1 dioecious)
AGGTACTCGTACGGGCACCAGGATGGCCTCTGGGAGTACAACTTGATGCA
CGACTGCGGGTGCGAGAAGTGATGGGATTGGGCGGGGGAGGGGGGAGGTT
GATCGTACATTCCCACCACACACTGTGTTTTTTATTTTTCCCTTAGTTCT
GAATTTTCTCCATTTCTTTCTTTTTATTTCTATCACTTCTCTTTATTTTT
TGTCCTTGATTTTTACACCTCCTGCCTAAAAGAAGAAACGTCAAATCCAA
TCGTGTTTGTCTCCTCCTTTCTCGTGCGGACTAATCCTCCGGCGTGTTTC
TGCTTGTTTTTTTCTTGTTTTGACGTTTTCTTACTTTTTGTCATTTTCGA
AGTATAATGTAATACCATACCCAATCTCCTTATTACATCCTATACTATCA
TACCCTATCTCATTTTTATGCCCTATAATATCATACCTCACCCAATCTCC
TTATTACATCCTATACTATCATACTCTATCTTATTTTTATGCCCTATAAT
ATCATACCTCCAGCTACTACGGCTTCGACCCACACGACGACTCCGACAAC
CTGCGTATCCACAACAACATCGTCTACAATAACGGTAAGATCACATGCAT
ATATATATATACATACTGTATAGGTTTTGGATGGGCGAAATATGTACTTC
CTGATTTGCAAGATGCTTGGCGATAAGATTTACACCAGGTTTGGCAATAC
AATAAGAGTTTGTAGAGCATGCTTGACAATACCATTGACCACATTGGTTT
ACATTATAGTTTATTAAGGATCTATTAATAGATAGAGATCTCCGGTATTC
ACTGCTGTTTAACGGTAACGAGGACGCTATGAATATGATTAATACTGCCG
TACATTTTTTTTGTATACTAAATAACTAAATAAATACAACTGCCGTATGA
TATATAGACTATTAATACATAGTTTTTGGGGGGCTGTGTACTAACTGGTC
TACTTTTTAAGTGTCCCCGTAGCCTATGTACGGAACATGCCACTCGCGGG
TTTCCAAAAGCAGTTATAGTTTAATACGAAAACATCGCGCACCCTCTCCG
TCTCAATAGGACAAATATATTGTTAAACTCTCAATAGAACAAACCACGAG
GCGCCTCGTAACGTATAGCGCGAATATACTTAAGCATGTGTTCGAAGACT
GTCGTCGTCTTTCGAGCGGGTATGTTATGTTGTCCAATCAACGATGATCA
ATCTTCCAATCGATCGCCCACGATATGAAGGTTCCTAAACAACCCCCAAG
CGGGTGTAAAACTCCCGGCCAACACACTTCCACACCTATTGATACACAGT
TGCGTGACCCGATAAACTCGGGATTGATGATAGAGATAGATGGCGGTTGA
CGATAGAGATAGATGTACGCCGTCAAGGAGTATAAGCGGGGTTGGGAGAA
TAAGCGGGCTGATGCGGGACGGGACGACGGCTGAACCCGTCCCGCGAGAC
AAAATTCTCGGGCATAAACAGGGGCAGGGAAAAATAATGATTCCGTGTTC
AGCTGACCACGAGTAGGATTGGCAACTATATCCAGTTGACCTATATTCTG
GTAAATGCGGTGACATACACCCACACCCACACCCACCGTTCTGGCGTTAC
ATCTTTTGTTTGTTATTCGGTTACATCTTCTCGTTCCGATTCGTCTCCGC
CGTGGGGGCCATGGTCATGGACATGGGGCATCCCTCCTCCAGGAAACCAC
GGGATTATCGCTTCAAAGCGGTAAGCAAATTAACAATTCCTTCCCCTCAC
CTCCCCCAACCCCTCCCTTTTCCCCTGACGGGGTTTGTTTTGGCACGTTG
AAACGCCTCATCGTAAAAAAAATACGAATGAAAAATAATCACCCTTACTA
TCAAGTAATCAATTTAATGCCTCGGTGGAACACAGCAGCAGCAGCAGCAG
CTCCACGTCGATATTTTGGTGCGTGTACAAATAGACTGCTCAGCGCCCCA
TATATATATGTGTACCCTGGTATATATATATTACATGAAGCAAGCCGAAA
TACGTCTCCCAACCTTTCACATACGGCATATTATTCTTATTACTACGTTA
TCGTTATTAATTTTAATATAATTACTTTATTTGTTTTTTGTCCCTCCTCC
TCAGGTGCAACGACGTGTCCATCCAGAACAACGTGGTGTACGATAACAAG
GGGCACGGCATCATGCTCCACCGCTCCTGTGACGACGGCATCATCCGCAA
TAACATCATCACGTCCAACGGCAACGCCTGCATCGCGCTCTTCGAGTCCT
TCGGT
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Coding sequence (CDS) from alignment at H-elongata_contig66645:44..2298+

>mRNA_H-elongata_contig66645.14266.1 ID=mRNA_H-elongata_contig66645.14266.1|Name=mRNA_H-elongata_contig66645.14266.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig66645:44..2298+ (Himanthalia elongata Himel1 dioecious)
AGGTACTCGTACGGGCACCAGGATGGCCTCTGGGAGTACAACTTGATGCA
CGACTGCGGAGGTACTCGTACGGGCACCAGGATGGCCTCTGGGAGTACAA
CTTGATGCACGACTGCGGCTACTACGGCTTCGACCCACACGACGACTCCG
ACAACCTGCGTATCCACAACAACATCGTCTACAATAACGCTACTACGGCT
TCGACCCACACGACGACTCCGACAACCTGCGTATCCACAACAACATCGTC
TACAATAACGGAAACCACGGGATTATCGCTTCAAAGCGGAAACCACGGGA
TTATCGCTTCAAAGCGGTGCAACGACGTGTCCATCCAGAACAACGTGGTG
TACGATAACAAGGGGCACGGCATCATGCTCCACCGCTCCTGTGACGACGG
CATCATCCGCAATAACATCATCACGTCCAACGGCAACGCCTGCATCGCGC
TCTTCGAGTCCTTCGGTGTGCAACGACGTGTCCATCCAGAACAACGTGGT
GTACGATAACAAGGGGCACGGCATCATGCTCCACCGCTCCTGTGACGACG
GCATCATCCGCAATAACATCATCACGTCCAACGGCAACGCCTGCATCGCG
CTCTTCGAGTCCTTCGGT
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