prot_H-elongata_contig64266.14014.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig64266.14014.1
Unique Nameprot_H-elongata_contig64266.14014.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length88
Homology
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BLAST of mRNA_H-elongata_contig64266.14014.1 vs. uniprot
Match: D7FKU0_ECTSI (Putative serine rich protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU0_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 4.200e-17
Identity = 39/67 (58.21%), Postives = 52/67 (77.61%), Query Frame = 0 
Query:   19 LFSSLLGVTLLAFLRLASAYECRVVTRTSTTNYGTGITTAAHEGLTPFSLTDYQGIISFDEDHCIQV 85
            L  + LG+ L   LRLASAY+C VVTR +TTNYG GI+  AHEGLTPF L  ++G+++F+EDHC+Q+
Sbjct:    3 LLETKLGLALGLLLRLASAYDCPVVTREATTNYGAGISDEAHEGLTPFELGTWKGVVAFNEDHCVQM 69
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64266.14014.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKU0_ECTSI4.200e-1758.21Putative serine rich protein n=2 Tax=Ectocarpus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 33..37
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 19..32
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..37
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 38..87
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..37
score: 0.512
NoneNo IPR availableTMHMMTMhelixcoord: 15..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64266contigH-elongata_contig64266:294..883 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64266.14014.1mRNA_H-elongata_contig64266.14014.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig64266 294..883 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig64266.14014.1 ID=prot_H-elongata_contig64266.14014.1|Name=mRNA_H-elongata_contig64266.14014.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
GRAVPPSSAVNMGVSNHYLFSSLLGVTLLAFLRLASAYECRVVTRTSTTN
YGTGITTAAHEGLTPFSLTDYQGIISFDEDHCIQVSL*
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