mRNA_H-elongata_contig64266.14014.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64266.14014.1
Unique NamemRNA_H-elongata_contig64266.14014.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig64266.14014.1 vs. uniprot
Match: D7FKU0_ECTSI (Putative serine rich protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU0_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 4.200e-17
Identity = 39/67 (58.21%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:   55 LFSSLLGVTLLAFLRLASAYECRVVTRTSTTNYGTGITTAAHEGLTPFSLTDYQGIISFDEDHCIQV 255
            L  + LG+ L   LRLASAY+C VVTR +TTNYG GI+  AHEGLTPF L  ++G+++F+EDHC+Q+
Sbjct:    3 LLETKLGLALGLLLRLASAYDCPVVTREATTNYGAGISDEAHEGLTPFELGTWKGVVAFNEDHCVQM 69
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64266.14014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKU0_ECTSI4.200e-1758.21Putative serine rich protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64266contigH-elongata_contig64266:294..883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue3.9e-14
Seed eggNOG ortholog2880.D7FKU0
Preferred nameTOS1
GOsGO:0000271,GO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003824,GO:0003843,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005975,GO:0005976,GO:0006073,GO:0006074,GO:0006075,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009250,GO:0009272,GO:0009277,GO:0009987,GO:0010383,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0030312,GO:0033692,GO:0034406,GO:0034407,GO:0034410,GO:0034411,GO:0034637,GO:0034645,GO:0035251,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044036,GO:0044038,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046527,GO:0051273,GO:0051274,GO:0051278,GO:0070589,GO:0070592,GO:0070879,GO:0070880,GO:0071554,GO:0071704,GO:0071840,GO:0071852,GO:0071944,GO:0071966,GO:0071969,GO:0071970,GO:1901576
EggNOG free text desc.Putative TOS1-like glycosyl hydrolase (DUF2401)
EggNOG OGs2CBPA@1,2QSI7@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size265
Cds size264
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931028.523689-CDS-H-elongata_contig64266:293..4031622931028.523689-CDS-H-elongata_contig64266:293..403Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64266 294..403 -
1691679668.1335003-CDS-H-elongata_contig64266:293..4031691679668.1335003-CDS-H-elongata_contig64266:293..403Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64266 294..403 -
1622931028.5416863-CDS-H-elongata_contig64266:729..8831622931028.5416863-CDS-H-elongata_contig64266:729..883Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64266 730..883 -
1691679668.1429374-CDS-H-elongata_contig64266:729..8831691679668.1429374-CDS-H-elongata_contig64266:729..883Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64266 730..883 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64266.14014.1prot_H-elongata_contig64266.14014.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64266 294..883 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64266.14014.1

>prot_H-elongata_contig64266.14014.1 ID=prot_H-elongata_contig64266.14014.1|Name=mRNA_H-elongata_contig64266.14014.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
GRAVPPSSAVNMGVSNHYLFSSLLGVTLLAFLRLASAYECRVVTRTSTTN
YGTGITTAAHEGLTPFSLTDYQGIISFDEDHCIQVSL*
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mRNA from alignment at H-elongata_contig64266:294..883-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64266.14014.1 ID=mRNA_H-elongata_contig64266.14014.1|Name=mRNA_H-elongata_contig64266.14014.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=590bp|location=Sequence derived from alignment at H-elongata_contig64266:294..883- (Himanthalia elongata Himel1 dioecious)
GGACGCGCGGTGCCGCCCTCCTCTGCAGTGAACATGGGTGTATCTAACCA
TTATCTATTTTCTTCCCTGTTGGGGGTCACGCTGCTGGCGTTCCTGAGAT
TGGCAAGCGCGTATGAATGCCGAGTCGTCACGCGGACGTCTACTACGAAC
TATGGTAAGCATTGGTGGTGACCTTTGTCGCGAGATCGAGGTATTATCAG
AGAAGCTAGCTGCGTTGGTCAAGGTGGAAACCTTACCAAAAACAAACTGA
GCCCTTGGTCGGTAAACCGCGTACCGATCGGGTGATTCTCGTGTTCCAGT
GACCTCTTTGCGGGAGCAGCGACGACGGCGGGTGCTGCAGTAATAATCAT
CATCCTCATCCTCGGCTTTCTGGGGTCGCGCTCGAAATCAAGTTGGGTTG
TCGTGGTTATAAGAACAAACAAACAAACAAAGAAACAAGAACGCTCTGCT
GCTTATTATTATTATTATCGCTTCCATCAGGAACGGGCATCACCACGGCC
GCGCACGAGGGCCTCACTCCGTTCTCGTTGACAGATTACCAAGGCATCAT
TTCGTTCGACGAGGACCACTGCATCCAGGTTAGCTTGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig64266:294..883-

>mRNA_H-elongata_contig64266.14014.1 ID=mRNA_H-elongata_contig64266.14014.1|Name=mRNA_H-elongata_contig64266.14014.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig64266:294..883- (Himanthalia elongata Himel1 dioecious)
GGACGCGCGGTGCCGCCCTCCTCTGCAGTGAACATGGGTGTATCTAACCA
TTATCTATTTTCTTCCCTGTTGGGGGTCACGCTGCTGGCGTTCCTGAGAT
TGGCAAGCGCGTATGAATGCCGAGTCGTCACGCGGACGTCTACTACGAAC
TATGGGACGCGCGGTGCCGCCCTCCTCTGCAGTGAACATGGGTGTATCTA
ACCATTATCTATTTTCTTCCCTGTTGGGGGTCACGCTGCTGGCGTTCCTG
AGATTGGCAAGCGCGTATGAATGCCGAGTCGTCACGCGGACGTCTACTAC
GAACTATGGAACGGGCATCACCACGGCCGCGCACGAGGGCCTCACTCCGT
TCTCGTTGACAGATTACCAAGGCATCATTTCGTTCGACGAGGACCACTGC
ATCCAGGTTAGCTTGTAGGAACGGGCATCACCACGGCCGCGCACGAGGGC
CTCACTCCGTTCTCGTTGACAGATTACCAAGGCATCATTTCGTTCGACGA
GGACCACTGCATCCAGGTTAGCTTGTAG
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