prot_H-elongata_contig6379.13952.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig6379.13952.1
Unique Nameprot_H-elongata_contig6379.13952.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length96
Homology
[Close]
BLAST of mRNA_H-elongata_contig6379.13952.1 vs. uniprot
Match: A0A6H5L487_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L487_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 4.220e-25
Identity = 58/110 (52.73%), Postives = 70/110 (63.64%), Query Frame = 0 
Query:    1 MLRAEDLPLGKPTELRMMEIISFCKENDVGLELVPQGRGLQPPTINKPEFDFDWVRGEADGADPVGGRGG-----GSG-------SLFSSQEL----RQLENLLEDGAEE 94
            MLRAEDLPLG+PTEL M +II FCK+N VGLE+VP+GRGL PP+ NKP  DFD+ +  + G D    RG      G+G       SLF+ QEL    +Q E  LED  EE
Sbjct:  168 MLRAEDLPLGRPTELPMSQIIEFCKDNGVGLEIVPRGRGLHPPSRNKPHIDFDYSKSSSHGQDGGSARGSSTAAAGTGRPRQDESSLFTPQELARIKKQFEKSLEDSDEE 277
[Close]
BLAST of mRNA_H-elongata_contig6379.13952.1 vs. uniprot
Match: D8LS92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS92_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 2.020e-18
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 0 
Query:    1 MLRAEDLPLGKPTELRMMEIISFCKENDVGLELVPQGRGLQPPTINKPEF 50
            MLRAEDLPLG+PTEL M +II FCK+N VGLE+VP GRGL PP+ NKP+ 
Sbjct:   25 MLRAEDLPLGRPTELPMSQIIEFCKDNGVGLEIVPTGRGLHPPSRNKPQM 74
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6379.13952.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L487_9PHAE4.220e-2552.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS92_ECTSI2.020e-1872.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 78..95
IPR021503Protein of unknown function DUF3110PFAMPF11360DUF3110coord: 1..43
e-value: 1.4E-5
score: 25.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6379contigH-elongata_contig6379:9802..10646 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6379.13952.1mRNA_H-elongata_contig6379.13952.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig6379 9540..10706 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig6379.13952.1 ID=prot_H-elongata_contig6379.13952.1|Name=mRNA_H-elongata_contig6379.13952.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
MLRAEDLPLGKPTELRMMEIISFCKENDVGLELVPQGRGLQPPTINKPEF
DFDWVRGEADGADPVGGRGGGSGSLFSSQELRQLENLLEDGAEEA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021503DUF3110