mRNA_H-elongata_contig6379.13952.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6379.13952.1
Unique NamemRNA_H-elongata_contig6379.13952.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig6379.13952.1 vs. uniprot
Match: A0A6H5L487_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L487_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 8.150e-37
Identity = 75/130 (57.69%), Postives = 89/130 (68.46%), Query Frame = 1 
Query:    1 QGRNVLRAWEEKTEAARYALMLRAEDLPLGKPTELRMMEIISFCKENDVGLELVPQGRGLQPPTINKPEFDFDWVRGEADGADPVGGRGG-----GSG-------SLFSSQEL----RQLENLLEDGAEE 342
            QGRNVLRAW++K EAARYALMLRAEDLPLG+PTEL M +II FCK+N VGLE+VP+GRGL PP+ NKP  DFD+ +  + G D    RG      G+G       SLF+ QEL    +Q E  LED  EE
Sbjct:  148 QGRNVLRAWQDKPEAARYALMLRAEDLPLGRPTELPMSQIIEFCKDNGVGLEIVPRGRGLHPPSRNKPHIDFDYSKSSSHGQDGGSARGSSTAAAGTGRPRQDESSLFTPQELARIKKQFEKSLEDSDEE 277
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BLAST of mRNA_H-elongata_contig6379.13952.1 vs. uniprot
Match: D8LS92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS92_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 1.980e-29
Identity = 52/69 (75.36%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    4 GRNVLRAWEEKTEAARYALMLRAEDLPLGKPTELRMMEIISFCKENDVGLELVPQGRGLQPPTINKPEF 210
            GRNVLRAW++K EAARYALMLRAEDLPLG+PTEL M +II FCK+N VGLE+VP GRGL PP+ NKP+ 
Sbjct:    6 GRNVLRAWQDKPEAARYALMLRAEDLPLGRPTELPMSQIIEFCKDNGVGLEIVPTGRGLHPPSRNKPQM 74
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BLAST of mRNA_H-elongata_contig6379.13952.1 vs. uniprot
Match: A0A7S4D7C7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7C7_HETAK)

HSP 1 Score: 71.2 bits (173), Expect = 3.780e-11
Identity = 39/106 (36.79%), Postives = 60/106 (56.60%), Query Frame = 1 
Query:   10 NVLRAWEEKTEAARYALMLRAEDLPLGKPTELRMMEIISFCKENDVGLELVPQGRGLQPPTINKPEFDFDWVRGEADGADPVGGRGG-GSGSLFSSQELRQLENLL 324
            N+   WE K EA +YA+ML+A+D  +  P  +   E++ FCK+++   E+VP+G  L PP  N P+ ++D  +     A  V G G  G  +LFS QEL  + + L
Sbjct:  201 NIALGWENKLEAQKYAMMLKAQDFFVPTPEMIPTEEMVIFCKDSNCLFEVVPKGSNLTPPEANVPDPEYDPSKVPPPPAWKVAGGGARGDPALFSRQELDSIRSDL 306
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BLAST of mRNA_H-elongata_contig6379.13952.1 vs. uniprot
Match: A0A7C3VUB0_9CYAN (DUF3110 domain-containing protein n=2 Tax=Oscillatoriales TaxID=1150 RepID=A0A7C3VUB0_9CYAN)

HSP 1 Score: 55.5 bits (132), Expect = 1.640e-6
Identity = 35/106 (33.02%), Postives = 52/106 (49.06%), Query Frame = 1 
Query:    7 RNVLRAWEEKTEAARYALMLRAEDLPLGKPTELRMMEIISFCKENDVGLELVPQGRGLQPPTINKPEFDFDWVRGEADGADPVGGRGGGSGSLFSSQELRQLENLL 324
            RNV+  +E + +AARYA+ML A+D     P  +   E+  FC++     +LVP+G    PP  N  + D++  +     A P  GR          +  RQLE LL
Sbjct:   25 RNVVLMFESEDDAARYAMMLEAQDFGAPTPEGIDSEEVEEFCQDAGYESQLVPEGALAIPPESNVEQPDWEPDKPPETAASPPEGRQQHMSETELERIRRQLEKLL 130
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BLAST of mRNA_H-elongata_contig6379.13952.1 vs. uniprot
Match: A0A846A5S9_9CYAN (DUF3110 domain-containing protein n=1 Tax=Leptolyngbya sp. SIO4C5 TaxID=2607774 RepID=A0A846A5S9_9CYAN)

HSP 1 Score: 53.5 bits (127), Expect = 8.080e-6
Identity = 38/110 (34.55%), Postives = 51/110 (46.36%), Query Frame = 1 
Query:    7 RNVLRAWEEKTEAARYALMLRAEDLPLGKPTELRMMEIISFCKENDVGLELVPQGRGLQPPTINKPEFDFDWVRGEAD---GADPVGGRGGGSGSLFSSQELRQLENLLE 327
            RNV+  +E + +AARY+LML A+DLP        + +I  FC       +LVP+G    PP  N  + D+D     AD    AD  G          S  EL Q+   LE
Sbjct:   25 RNVVLMFENEEDAARYSLMLEAQDLPSPSVEAFELEDIEEFCGSAGYEYKLVPEGTLAIPPEQNVDKTDWDPDAEAADEFPAADETG---------LSEAELAQIRQQLE 125
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BLAST of mRNA_H-elongata_contig6379.13952.1 vs. uniprot
Match: A0A1Z4Q155_9CYAN (Uncharacterized protein n=3 Tax=Nostocales TaxID=1161 RepID=A0A1Z4Q155_9CYAN)

HSP 1 Score: 51.6 bits (122), Expect = 5.150e-5
Identity = 29/72 (40.28%), Postives = 39/72 (54.17%), Query Frame = 1 
Query:    7 RNVLRAWEEKTEAARYALMLRAEDLPLGKPTELRMMEIISFCKENDVGLELVPQGRGLQ-PPTINKPEFDFD 219
            RN +  +E + +AARYALML A+D P          EI  FC+  D   E+VP   GL  PP +N  E D++
Sbjct:   29 RNKVLMFESEDDAARYALMLEAQDFPTPTVEAFDSEEIKEFCQSADYDWEIVPTDSGLAIPPEMNVEETDWN 100
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6379.13952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L487_9PHAE8.150e-3757.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS92_ECTSI1.980e-2975.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4D7C7_HETAK3.780e-1136.79Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7C3VUB0_9CYAN1.640e-633.02DUF3110 domain-containing protein n=2 Tax=Oscillat... [more]
A0A846A5S9_9CYAN8.080e-634.55DUF3110 domain-containing protein n=1 Tax=Leptolyn... [more]
A0A1Z4Q155_9CYAN5.150e-540.28Uncharacterized protein n=3 Tax=Nostocales TaxID=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6379contigH-elongata_contig6379:9540..10706 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF3110
Ec32 orthologEc-12_004380.1
Exons4
Model size610
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6379.13952.1prot_H-elongata_contig6379.13952.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6379 9802..10646 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931021.2120144-UTR-H-elongata_contig6379:9539..98011622931021.2120144-UTR-H-elongata_contig6379:9539..9801Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6379 9540..9801 -
1691679665.4969773-UTR-H-elongata_contig6379:9539..98011691679665.4969773-UTR-H-elongata_contig6379:9539..9801Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6379 9540..9801 -
1622931021.3115115-UTR-H-elongata_contig6379:10646..107061622931021.3115115-UTR-H-elongata_contig6379:10646..10706Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6379 10647..10706 -
1691679665.5459661-UTR-H-elongata_contig6379:10646..107061691679665.5459661-UTR-H-elongata_contig6379:10646..10706Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6379 10647..10706 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931021.2293766-CDS-H-elongata_contig6379:9801..98451622931021.2293766-CDS-H-elongata_contig6379:9801..9845Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6379 9802..9845 -
1691679665.5068333-CDS-H-elongata_contig6379:9801..98451691679665.5068333-CDS-H-elongata_contig6379:9801..9845Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6379 9802..9845 -
1622931021.2424853-CDS-H-elongata_contig6379:9857..99521622931021.2424853-CDS-H-elongata_contig6379:9857..9952Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6379 9858..9952 -
1691679665.516893-CDS-H-elongata_contig6379:9857..99521691679665.516893-CDS-H-elongata_contig6379:9857..9952Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6379 9858..9952 -
1622931021.2562094-CDS-H-elongata_contig6379:10279..103741622931021.2562094-CDS-H-elongata_contig6379:10279..10374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6379 10280..10374 -
1691679665.5269108-CDS-H-elongata_contig6379:10279..103741691679665.5269108-CDS-H-elongata_contig6379:10279..10374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6379 10280..10374 -
1622931021.288088-CDS-H-elongata_contig6379:10592..106461622931021.288088-CDS-H-elongata_contig6379:10592..10646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6379 10593..10646 -
1691679665.5366623-CDS-H-elongata_contig6379:10592..106461691679665.5366623-CDS-H-elongata_contig6379:10592..10646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6379 10593..10646 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6379.13952.1

>prot_H-elongata_contig6379.13952.1 ID=prot_H-elongata_contig6379.13952.1|Name=mRNA_H-elongata_contig6379.13952.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
MLRAEDLPLGKPTELRMMEIISFCKENDVGLELVPQGRGLQPPTINKPEF
DFDWVRGEADGADPVGGRGGGSGSLFSSQELRQLENLLEDGAEEA*
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mRNA from alignment at H-elongata_contig6379:9540..10706-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6379.13952.1 ID=mRNA_H-elongata_contig6379.13952.1|Name=mRNA_H-elongata_contig6379.13952.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1167bp|location=Sequence derived from alignment at H-elongata_contig6379:9540..10706- (Himanthalia elongata Himel1 dioecious)
CAGGGACGAAACGTGCTGAGGGCCTGGGAGGAAAAAACGGAGGCTGCCAG
GTACGCCCTGATGCTGAGGGCCGAAGACCTCCCTCTAGGAAAGCCAACCG
AGCTGCGAATGATGGTGAGAGACGGACGGTAGCTAGGGCGCTCGCTGTCT
TTAAGGACTCTGACCGCGGATCCTCGGGGGGGAGGGGGGGGGCTCAACCA
TCTCGTCGAATCTTTCCTAGGGATCGAGAGCATGGATCGCATGGACCGCT
TTCAAGAAGGCTACCGAGGCCCTATGTGCTACCCGCTGCACCTGACCGCG
CGACCCTCGCTCACTCCCTCCTTCCGCTGTAGGAAATTATCTCGTTCTGC
AAGGAGAATGACGTGGGACTGGAGCTCGTCCCGCAAGGGCGGGGGTTGCA
GCCGCCGACCATAAACAAGCCCGAATTGTGAGCTCTCTCCACTAGCGACT
AACGACAAAGCGTAGGCGCATCAATAACGCCTTCCCTTCCGTCCTGGTGC
CGTTGGCGGGATATAATAACGGCAACAGCGCGTTGTTGGTCTTGGAACGC
GGGAAAAAATGTTTGCGAGGTCGCTTAGTTAGTCCTCCTACACGTAAGAG
CGGAATAACGCGATTGATGTTGGCTTTTTAATAGGAGGCCAGGTGTGCTG
CTGCTGTCATTTGGGGTGAAAGCTCATCGATCAATGCATGCCCTTGTTGA
GCTCCACCCACGCGAACCTCCGCCTACTTGCCTGTCTCCTTGACAACCCC
ACAGCGACTTCGACTGGGTGAGAGGGGAGGCCGATGGGGCGGATCCCGTC
GGCGGCCGCGGGGGTGGTTCTGGTTCTCTCTTCTCCTCTCAGGAGCTGAC
CCGGCTCAAGGGACAACTCGAGAACTTGCTCGAGGACGGCGCGGAAGAGG
CATGAAGACCCCAGCAACTCACACCGGCGTAATGGCATGATGACAGCGGT
TCCTGCCTCAGACGGGGACGGTGTGTGCACAGCCCGTAACGTAACGTAAC
GTAACTCGACAACGACAACGGTAACGGGACAGCGTGCGAGAATAATCTTG
CTCATATTTTTCGTGTATTTTTTTATTCAGCGGTCGGCTTTCCTCTTCTT
TATTCTGCAGCCACGGCCGGATGGGCTGGATGGGCCACGCGGTTAGGGCT
GGAGTCACGAGAGCCGG
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Coding sequence (CDS) from alignment at H-elongata_contig6379:9540..10706-

>mRNA_H-elongata_contig6379.13952.1 ID=mRNA_H-elongata_contig6379.13952.1|Name=mRNA_H-elongata_contig6379.13952.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig6379:9540..10706- (Himanthalia elongata Himel1 dioecious)
ATGCTGAGGGCCGAAGACCTCCCTCTAGGAAAGCCAACCGAGCTGCGAAT
GATGATGCTGAGGGCCGAAGACCTCCCTCTAGGAAAGCCAACCGAGCTGC
GAATGATGGAAATTATCTCGTTCTGCAAGGAGAATGACGTGGGACTGGAG
CTCGTCCCGCAAGGGCGGGGGTTGCAGCCGCCGACCATAAACAAGCCCGA
ATTGAAATTATCTCGTTCTGCAAGGAGAATGACGTGGGACTGGAGCTCGT
CCCGCAAGGGCGGGGGTTGCAGCCGCCGACCATAAACAAGCCCGAATTCG
ACTTCGACTGGGTGAGAGGGGAGGCCGATGGGGCGGATCCCGTCGGCGGC
CGCGGGGGTGGTTCTGGTTCTCTCTTCTCCTCTCAGGAGCTGACGACTTC
GACTGGGTGAGAGGGGAGGCCGATGGGGCGGATCCCGTCGGCGGCCGCGG
GGGTGGTTCTGGTTCTCTCTTCTCCTCTCAGGAGCTGAGACAACTCGAGA
ACTTGCTCGAGGACGGCGCGGAAGAGGCATGAGACAACTCGAGAACTTGC
TCGAGGACGGCGCGGAAGAGGCATGA
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