prot_H-elongata_contig63765.13948.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig63765.13948.1
Unique Nameprot_H-elongata_contig63765.13948.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length134
Homology
[Close]
BLAST of mRNA_H-elongata_contig63765.13948.1 vs. uniprot
Match: A0A6H5JK18_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK18_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 2.550e-33
Identity = 76/132 (57.58%), Postives = 85/132 (64.39%), Query Frame = 0 
Query:    1 DEVLDLKFSPDGTRLATCSRDMSILVYSVEE--EDESDCEERGIKRWPRAQGVRVEGSVREAKGHEERFGVASAWRRSRRLKRRLGYGRLSVRLIHRLRRSTTASVCRIFWSPCSRFILSCLEEPDGNPFEP 130
            DEVLDLKFSPDGT LATCSRDMSILVY++E   E+    ++ G  R PR    +               GV    R  +   R LG+  L VRLIHRLRRS TASVCRIFWSPC RFILSCLEEP+GNPF P
Sbjct:  230 DEVLDLKFSPDGTLLATCSRDMSILVYAIEAMPENHGSLKKGGKDRSPR----KARAGXXXXXXXXXDTGVDEMPRDGQNKLRPLGFKGLGVRLIHRLRRSATASVCRIFWSPCGRFILSCLEEPNGNPFNP 357
[Close]
BLAST of mRNA_H-elongata_contig63765.13948.1 vs. uniprot
Match: D7G5J6_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5J6_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 4.730e-33
Identity = 75/130 (57.69%), Postives = 84/130 (64.62%), Query Frame = 0 
Query:    1 DEVLDLKFSPDGTRLATCSRDMSILVYSVEEEDESDCEERGIKRWPRAQGVRVEGSVREAKGHEERFGVASAWRRSRRLKRRLGYGRLSVRLIHRLRRSTTASVCRIFWSPCSRFILSCLEEPDGNPFEP 130
            DEVLDLKFSPDGTRLATCSRDMSILVY++E   E+    +  ++    +  R  G            GV    R  +   R LG+  L VRLIHRLRRS TASVCRIFWSPC RFILSCLEEP GNPF P
Sbjct:  149 DEVLDLKFSPDGTRLATCSRDMSILVYAIEAMPENHGSSKEGEKDDGPRKARASGXXXXXXXXXX-XGVDEMPRDGQNKLRPLGFKGLGVRLIHRLRRSATASVCRIFWSPCGRFILSCLEEPHGNPFIP 277
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63765.13948.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JK18_9PHAE2.550e-3357.58F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
D7G5J6_ECTSI4.730e-3357.69F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..37
score: 9.283
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 1..37
score: 9.406
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 2..120

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63765contigH-elongata_contig63765:154..1713 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63765.13948.1mRNA_H-elongata_contig63765.13948.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig63765 154..1713 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig63765.13948.1 ID=prot_H-elongata_contig63765.13948.1|Name=mRNA_H-elongata_contig63765.13948.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
DEVLDLKFSPDGTRLATCSRDMSILVYSVEEEDESDCEERGIKRWPRAQG
VRVEGSVREAKGHEERFGVASAWRRSRRLKRRLGYGRLSVRLIHRLRRST
TASVCRIFWSPCSRFILSCLEEPDGNPFEPRRV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017986WD40_repeat_dom
IPR001680WD40_repeat
IPR036322WD40_repeat_dom_sf