mRNA_H-elongata_contig63765.13948.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63765.13948.1
Unique NamemRNA_H-elongata_contig63765.13948.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig63765.13948.1 vs. uniprot
Match: A0A6H5JK18_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK18_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 2.550e-33
Identity = 76/132 (57.58%), Postives = 85/132 (64.39%), Query Frame = 1 
Query:    1 DEVLDLKFSPDGTRLATCSRDMSILVYSVEE--EDESDCEERGIKRWPRAQGVRVEGSVREAKGHEERFGVASAWRRSRRLKRRLGYGRLSVRLIHRLRRSTTASVCRIFWSPCSRFILSCLEEPDGNPFEP 390
            DEVLDLKFSPDGT LATCSRDMSILVY++E   E+    ++ G  R PR    +               GV    R  +   R LG+  L VRLIHRLRRS TASVCRIFWSPC RFILSCLEEP+GNPF P
Sbjct:  230 DEVLDLKFSPDGTLLATCSRDMSILVYAIEAMPENHGSLKKGGKDRSPR----KARAGXXXXXXXXXDTGVDEMPRDGQNKLRPLGFKGLGVRLIHRLRRSATASVCRIFWSPCGRFILSCLEEPNGNPFNP 357
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BLAST of mRNA_H-elongata_contig63765.13948.1 vs. uniprot
Match: D7G5J6_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5J6_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 4.730e-33
Identity = 75/130 (57.69%), Postives = 84/130 (64.62%), Query Frame = 1 
Query:    1 DEVLDLKFSPDGTRLATCSRDMSILVYSVEEEDESDCEERGIKRWPRAQGVRVEGSVREAKGHEERFGVASAWRRSRRLKRRLGYGRLSVRLIHRLRRSTTASVCRIFWSPCSRFILSCLEEPDGNPFEP 390
            DEVLDLKFSPDGTRLATCSRDMSILVY++E   E+    +  ++    +  R  G            GV    R  +   R LG+  L VRLIHRLRRS TASVCRIFWSPC RFILSCLEEP GNPF P
Sbjct:  149 DEVLDLKFSPDGTRLATCSRDMSILVYAIEAMPENHGSSKEGEKDDGPRKARASGXXXXXXXXXX-XGVDEMPRDGQNKLRPLGFKGLGVRLIHRLRRSATASVCRIFWSPCGRFILSCLEEPHGNPFIP 277
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63765.13948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JK18_9PHAE2.550e-3357.58F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
D7G5J6_ECTSI4.730e-3357.69F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63765contigH-elongata_contig63765:154..1713 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue8.6e-29
Seed eggNOG ortholog2880.D7G5J6
KEGG koko:K10263,ko:K22382
EggNOG free text desc.negative regulation of gluconeogenesis
EggNOG OGsKOG0293@1,KOG0293@2759
Ec32 ortholog descriptionF-box domain
Ec32 orthologEc-22_000900.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size402
Cds size402
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931020.6238601-CDS-H-elongata_contig63765:153..4791622931020.6238601-CDS-H-elongata_contig63765:153..479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63765 154..479 +
1691679665.2304177-CDS-H-elongata_contig63765:153..4791691679665.2304177-CDS-H-elongata_contig63765:153..479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63765 154..479 +
1622931020.640333-CDS-H-elongata_contig63765:1637..17131622931020.640333-CDS-H-elongata_contig63765:1637..1713Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63765 1638..1713 +
1691679665.2431412-CDS-H-elongata_contig63765:1637..17131691679665.2431412-CDS-H-elongata_contig63765:1637..1713Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63765 1638..1713 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63765.13948.1prot_H-elongata_contig63765.13948.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63765 154..1713 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63765.13948.1

>prot_H-elongata_contig63765.13948.1 ID=prot_H-elongata_contig63765.13948.1|Name=mRNA_H-elongata_contig63765.13948.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
DEVLDLKFSPDGTRLATCSRDMSILVYSVEEEDESDCEERGIKRWPRAQG
VRVEGSVREAKGHEERFGVASAWRRSRRLKRRLGYGRLSVRLIHRLRRST
TASVCRIFWSPCSRFILSCLEEPDGNPFEPRRV*
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mRNA from alignment at H-elongata_contig63765:154..1713+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63765.13948.1 ID=mRNA_H-elongata_contig63765.13948.1|Name=mRNA_H-elongata_contig63765.13948.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1560bp|location=Sequence derived from alignment at H-elongata_contig63765:154..1713+ (Himanthalia elongata Himel1 dioecious)
GACGAGGTGCTGGACTTGAAGTTTTCACCGGACGGCACTCGGCTAGCCAC
CTGCTCCCGCGACATGTCGATTCTAGTGTACTCTGTAGAAGAAGAGGACG
AGAGTGATTGCGAAGAGCGAGGTATTAAACGATGGCCGCGGGCACAAGGA
GTTCGAGTTGAAGGAAGCGTTCGAGAAGCGAAAGGTCACGAGGAAAGGTT
TGGCGTTGCCTCGGCGTGGCGACGGAGCCGGCGGTTAAAGCGGCGCCTGG
GGTACGGGCGCTTGTCCGTGCGGCTGATCCACCGGCTGAGGAGGTCGACC
ACGGCGTCTGTTTGCCGGATATTTTGGTGAGAGAACCCCCCCTCCCCCCC
ACCCCCACCCCCACCCCCACCCCCATCCCCACCCCCACCCCCATCCCCAT
CCCCGAGAAATATTAAATGAAGCAGAATAAGAAATATATAATCTTCGTCC
TTGTCGTTGTCGTTGTCGTTGTCGTTGTCTCTTTGGCGTCTTGTTTTATT
TTTATTTTTTTTTGTTCGTGACTTTTGTATCCTGTATGTCCGTGCGCGCG
TGGTATTCCCCCGAACCGCGGGAGTTTGTGTTGTTACTGCTTTTGTATGT
GCGATATTGTGTTGTGTTGGGGTGTCGGGTATTGCATTGTATTGTATTGT
GTCGGGTATTGTATTTAAAAAACCTTGAACTCATTCCAACCCTCCGAACA
TGTGTTGGGTACTGTATTGTGTTGGGTATTATATTGTGTTGGGTATTGCA
TTGGGTCAGCCGCTCATTTTTTATAATGCTCTGAGAGCCCCCCTCCTAAC
CTCGACCAGTTGGTCTTGGGGAAAACCAGAGAGATATCTCTCTCTCTTTT
GCCAGTCCACTTGAACGGGTTTATCGTACTGTACATAGATCATAGTCGAT
ACCATTGGGTCCTCTTCTTATTTTTATTATTATTATAGGGTTTCCACGTG
TCACAAACAATACACGAAAAACATGCACTAAAGTGAACAGGAAACCCTAT
ATTATGATTATTATTGTTATTATTATTATTATTATTATTATTTAAAAAAA
CCTTGAACTTTTCTAGCTCAAATTTTATCGCGATTTTGGATACCTCTCTA
GTTGGCCGGGTGGCGATCCGTTCGTGTGTTTGCATTTCTCTGTGTGTGTT
CGTGTGTATTTATTAAATTGCACATAACCGCGCAATCCGACCCTGTCGTC
CTAGTCCTTCTATGTGTGTGCGTCCTTGTGTGTGTCTTGTGTGTGTGTGT
CTGTGTGTGTATTTGGGGGTAAAGTAATGCAGAAATTGGGGTTTTGTAAC
ACCGACACCGACCTTCGATGCGGCGATAGTAATGTATTGCATAATAGTGC
ATACTGTAGTAGTCCGTGGTCGTATATATATTCATAATGATATTCATAAT
GATAATGATATTGATATTGATATATGTCATCGCTTGTGTGTGTGATACTG
TCCTCCAAACTACGAAACTTGTACTTGGATACAGGTCTCCATGCAGCAGA
TTCATCTTGTCCTGTCTAGAGGAGCCCGACGGTAACCCTTTCGAACCCAG
GCGAGTCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig63765:154..1713+

>mRNA_H-elongata_contig63765.13948.1 ID=mRNA_H-elongata_contig63765.13948.1|Name=mRNA_H-elongata_contig63765.13948.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig63765:154..1713+ (Himanthalia elongata Himel1 dioecious)
GACGAGGTGCTGGACTTGAAGTTTTCACCGGACGGCACTCGGCTAGCCAC
CTGCTCCCGCGACATGTCGATTCTAGTGTACTCTGTAGAAGAAGAGGACG
AGAGTGATTGCGAAGAGCGAGGTATTAAACGATGGCCGCGGGCACAAGGA
GTTCGAGTTGAAGGAAGCGTTCGAGAAGCGAAAGGTCACGAGGAAAGGTT
TGGCGTTGCCTCGGCGTGGCGACGGAGCCGGCGGTTAAAGCGGCGCCTGG
GGTACGGGCGCTTGTCCGTGCGGCTGATCCACCGGCTGAGGAGGTCGACC
ACGGCGTCTGTTTGCCGGATATTTTGGACGAGGTGCTGGACTTGAAGTTT
TCACCGGACGGCACTCGGCTAGCCACCTGCTCCCGCGACATGTCGATTCT
AGTGTACTCTGTAGAAGAAGAGGACGAGAGTGATTGCGAAGAGCGAGGTA
TTAAACGATGGCCGCGGGCACAAGGAGTTCGAGTTGAAGGAAGCGTTCGA
GAAGCGAAAGGTCACGAGGAAAGGTTTGGCGTTGCCTCGGCGTGGCGACG
GAGCCGGCGGTTAAAGCGGCGCCTGGGGTACGGGCGCTTGTCCGTGCGGC
TGATCCACCGGCTGAGGAGGTCGACCACGGCGTCTGTTTGCCGGATATTT
TGGTCTCCATGCAGCAGATTCATCTTGTCCTGTCTAGAGGAGCCCGACGG
TAACCCTTTCGAACCCAGGCGAGTCTGAGTCTCCATGCAGCAGATTCATC
TTGTCCTGTCTAGAGGAGCCCGACGGTAACCCTTTCGAACCCAGGCGAGT
CTGA
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