prot_H-elongata_contig6287.13863.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig6287.13863.1
Unique Nameprot_H-elongata_contig6287.13863.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length160
Homology
BLAST of mRNA_H-elongata_contig6287.13863.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 8.160e-18
Identity = 57/147 (38.78%), Postives = 72/147 (48.98%), Query Frame = 0
Query:   25 TCSDGTPGLEAEEGQVCCSAGCDACGGPLCSTSGLPDYGSSDCCVITIMNSGVMCETTGEAPCILEVGGPVSITPSPTDVLVASIVSSETSSEILV------------TCSNGITGVESSNGEACCVAACGQCGGLGCSSVGLPDYG 159
            TCS+G PG++++    CC A C ACGG  C   G    G+ +CCV  I+  G  C    EAPC ++   P    PSP  +  A                         TCS GI G+ESS+G  CC   C  CGG GCS+VG+PDYG
Sbjct: 1272 TCSNGIPGIQSDN--ACCLAECGACGGSDCDEFG-GGLGADNCCVSDIVEHGEPCSIALEAPCYIDDSAPA---PSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXTEPTCSTGIPGIESSDGAVCCPTGCTMCGGSGCSTVGMPDYG 1412          
BLAST of mRNA_H-elongata_contig6287.13863.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 4.420e-8
Identity = 43/116 (37.07%), Postives = 53/116 (45.69%), Query Frame = 0
Query:   37 EGQVCCSAGCDACGGPLCSTSGLPDYGSSDCCVITIMNSGVMCETTGEAPCILEVGGPVSITPSPTDVLVASIVSSETSSEILVTCSNGITGVESSNGEACCVAACGQCGGLGCSS 152
            +G  CCSAGC+ CGG  CS  G      +DCC   I+ +G  C   G APC+LE G     +P+P                     S G  G+    G+ CC A CG CGG GC S
Sbjct:   26 KGIYCCSAGCEECGGSGCSDRG-DGLTGADCCTSDILAAGKAC---GSAPCLLEEGS----SPTPAS-------------------SGGCDGIL--QGDVCCSAECGTCGGSGCGS 112          
BLAST of mRNA_H-elongata_contig6287.13863.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.150e-7
Identity = 27/42 (64.29%), Postives = 32/42 (76.19%), Query Frame = 0
Query:  119 LVTCSNGITGVESSNGEACCVAACGQCGGLGCSSVGLPDYGA 160
            +V CS GI G+ESS+G  CC   C QCGG GCS+VGLP+YGA
Sbjct:  609 VVVCSTGIRGIESSDGAVCCPLGCTQCGGEGCSTVGLPEYGA 650          
BLAST of mRNA_H-elongata_contig6287.13863.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 2.950e-7
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 0
Query:  119 LVTCSNGITGVESSNGEACCVAACGQCGGLGCSSVGLPDYGA 160
            ++ CS GI G+ESS+G  CC   C QCGG GCS+VGLP+YGA
Sbjct:  409 VIVCSTGIPGIESSDGTVCCPINCTQCGGEGCSTVGLPEYGA 450          
BLAST of mRNA_H-elongata_contig6287.13863.1 vs. uniprot
Match: D7FHN7_ECTSI (von Willebrand A domain containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN7_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 6.630e-5
Identity = 21/30 (70.00%), Postives = 25/30 (83.33%), Query Frame = 0
Query:  122 CSNGITGVESSNGEACCVAACGQCGGLGCS 151
            CSNG+ G+ESSNG+ACC   CG CGG+GCS
Sbjct:  107 CSNGVYGIESSNGKACCALTCGSCGGVGCS 136          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6287.13863.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FJ68_ECTSI8.160e-1838.78WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FWE8_ECTSI4.420e-837.07Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A6H5JJ37_9PHAE1.150e-764.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRE8_ECTSI2.950e-761.90EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FHN7_ECTSI6.630e-570.00von Willebrand A domain containing protein n=2 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6287contigH-elongata_contig6287:7353..8939 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6287.13863.1mRNA_H-elongata_contig6287.13863.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig6287 7353..8939 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig6287.13863.1 ID=prot_H-elongata_contig6287.13863.1|Name=mRNA_H-elongata_contig6287.13863.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp
EVELSTAAPTSAPTTSPIADGEEPTCSDGTPGLEAEEGQVCCSAGCDACG
GPLCSTSGLPDYGSSDCCVITIMNSGVMCETTGEAPCILEVGGPVSITPS
PTDVLVASIVSSETSSEILVTCSNGITGVESSNGEACCVAACGQCGGLGC
SSVGLPDYGA
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