prot_H-elongata_contig61878.13748.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig61878.13748.1
Unique Nameprot_H-elongata_contig61878.13748.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length234
Homology
BLAST of mRNA_H-elongata_contig61878.13748.1 vs. uniprot
Match: D8LEU4_ECTSI (Structural maintenance of chromosomes protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEU4_ECTSI)

HSP 1 Score: 251 bits (640), Expect = 5.470e-73
Identity = 157/231 (67.97%), Postives = 166/231 (71.86%), Query Frame = 0
Query:    8 QAILRTFRGVSRNFSGVFQELVPSGSGRMIMKTTADAARQLEEQEEEDHHPEGKGQVPNSSRFG------RLGQAASSKKGKXXXXXXXXGEDSGGDAEAGKRDGGGEGGEDAVNGLSASTRVSDFVGVQIKVSFAAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSENPTQFITTTFRPEMVAVASQCYGISHQNKV 232
            +AILRTFRGVS+NFS VFQELVPSGSG M++KT+ADA                                   G   S KK    XXXXXX    GG+  AG         E+  NGLS +T VSDFVGVQIKVSF AAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSS+NPTQFITTTFRPEMVAVASQCYGISHQNKV
Sbjct: 1057 EAILRTFRGVSQNFSEVFQELVPSGSGVMVIKTSADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEAGNPGSGKKSSKGXXXXXXXXREGGEDGAGAD-------EEEPNGLSPTTLVSDFVGVQIKVSFVAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSDNPTQFITTTFRPEMVAVASQCYGISHQNKV 1280          
BLAST of mRNA_H-elongata_contig61878.13748.1 vs. uniprot
Match: A0A6H5KEG1_9PHAE (SMC hinge domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEG1_9PHAE)

HSP 1 Score: 238 bits (607), Expect = 3.150e-69
Identity = 152/229 (66.38%), Postives = 159/229 (69.43%), Query Frame = 0
Query:    4 CAFVQAILRTFRGVSRNFSGVFQELVPSGSGRMIMKTTADAARQLEEQEEEDHHPEGKGQVPNSSRFGRLGQAASSKKGKXXXXXXXXGEDSGGDAEAGKRDGGGEGGEDAVNGLSASTRVSDFVGVQIKVSFAAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSENPTQFITTTFRPEMVAVASQCYGISHQNKV 232
            C    AILRTFRGVS+NFS VFQELVPSGSG M++KT+AD                                        XXXXXXXX             D      E+  NGLS +T VSDFVGVQIKVSF AAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSS+NPTQFITTTFRPEMVAVASQCYGISHQNKV
Sbjct:  634 CLLATAILRTFRGVSQNFSEVFQELVPSGSGVMVIKTSADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD------EEEPNGLSPTTLVSDFVGVQIKVSFVAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSDNPTQFITTTFRPEMVAVASQCYGISHQNKV 856          
BLAST of mRNA_H-elongata_contig61878.13748.1 vs. uniprot
Match: W7T3Q8_9STRA (Structural maintenance of chromosomes protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T3Q8_9STRA)

HSP 1 Score: 216 bits (550), Expect = 7.130e-61
Identity = 126/227 (55.51%), Postives = 153/227 (67.40%), Query Frame = 0
Query:    8 QAILRTFRGVSRNFSGVFQELVPSGSGRMIMKTTADAARQLEEQEEEDHHPEGKGQVPNSSRFGRLGQAASSKKGKXXXXXXXXGEDSGGDAEAGKRDGGGEGGEDAVNGLSAST--RVSDFVGVQIKVSFAAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSENPTQFITTTFRPEMVAVASQCYGISHQNKV 232
            +AI+RTFRGVS++F+ VF+ELVP+G GRM+MKTTAD  + + E+ EE                  +G+     +            D G + E    DGG +G +    G SA    +VS F G+QI+VSF   G+  LM QLSGGQKA+VALALIFAIQRCDPAPFYLFDE+DQALDS+YRAAVA+LI RQAHS  NP QFIT+TFRPEMV VA +CYGISHQNKV
Sbjct: 1035 EAIIRTFRGVSKHFADVFKELVPNGYGRMVMKTTADTTQDINEETEE------------------VGKDDEDDQ------------DEGPEEEGLAADGGSKG-KQQRKGKSAEPPLKVSQFAGIQIQVSFTGTGDRHLMQQLSGGQKALVALALIFAIQRCDPAPFYLFDEVDQALDSTYRAAVAALINRQAHSETNPAQFITSTFRPEMVRVADRCYGISHQNKV 1230          
BLAST of mRNA_H-elongata_contig61878.13748.1 vs. uniprot
Match: A0A7S1D4Y7_CYCTE (Hypothetical protein n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D4Y7_CYCTE)

HSP 1 Score: 199 bits (505), Expect = 3.390e-60
Identity = 115/225 (51.11%), Postives = 140/225 (62.22%), Query Frame = 0
Query:    8 QAILRTFRGVSRNFSGVFQELVPSGSGRMIMKTTADAARQLEEQEEEDHHPEGKGQVPNSSRFGRLGQAASSKKGKXXXXXXXXGEDSGGDAEAGKRDGGGEGGEDAVNGLSASTRVSDFVGVQIKVSFAAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSENPTQFITTTFRPEMVAVASQCYGISHQNKV 232
            +AI RTFRGVS +F  VF+ELVP+GSG +IMKT  D + + +E+E E    E K                                                         S    VS + GV IKV F++ GE F+MSQLSGGQKA+VALALIF+IQRCDPAPFYLFDE+DQALDS+YRAAVASL+Q QA+S+ENPTQFI +TFRPE+V+VA++CYGISHQNKV
Sbjct:   38 EAINRTFRGVSAHFKDVFKELVPNGSGELIMKTAVDESDETDEEEIESPQDEAKADP------------------------------------------------------SPDPDVSLYRGVGIKVRFSSVGENFMMSQLSGGQKALVALALIFSIQRCDPAPFYLFDELDQALDSTYRAAVASLVQHQANSAENPTQFIVSTFRPELVSVANRCYGISHQNKV 208          
BLAST of mRNA_H-elongata_contig61878.13748.1 vs. uniprot
Match: A0A7S2ANS6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ANS6_9STRA)

HSP 1 Score: 201 bits (512), Expect = 1.540e-57
Identity = 118/224 (52.68%), Postives = 141/224 (62.95%), Query Frame = 0
Query:    8 QAILRTFRGVSRNFSGVFQELVPSGSGRMIMKTTADAARQLEEQEEEDHHPEGKGQVPNSSRFGRLGQAASSKKGKXXXXXXXXGEDSGGDAEAGKRDGGGEGGEDAVNGLSASTRVSDFVGVQIKVSFAAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSENPTQFITTTFRPEMVAVASQCYGISHQNK 231
            +AILRTF+GVS++FS VF ELVPSGSG +IM+T+ D    LEE +EE+   +G G  P  +                                                       VSDF GVQ+KVSF   GE FLMSQLSGGQKA+VAL+++FAIQRCDPAPFYLFDE+DQALDS+YRAAVA++IQRQA    NPTQFITTTFRPE+V VA++CYGIS QNK
Sbjct:  385 EAILRTFKGVSKHFSEVFSELVPSGSGHLIMRTSTD----LEEDDEEEG--DGSGGTPRMT-------------------------------------------------------VSDFEGVQVKVSFTPGGEVFLMSQLSGGQKAIVALSIVFAIQRCDPAPFYLFDELDQALDSTYRAAVAAMIQRQASHPTNPTQFITTTFRPELVNVAAKCYGISLQNK 547          
BLAST of mRNA_H-elongata_contig61878.13748.1 vs. uniprot
Match: A0A7S0GJA6_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GJA6_9STRA)

HSP 1 Score: 191 bits (485), Expect = 1.940e-53
Identity = 111/225 (49.33%), Postives = 139/225 (61.78%), Query Frame = 0
Query:    8 QAILRTFRGVSRNFSGVFQELVPSGSGRMIMKTTADAARQLEEQEEEDHHPEGKGQVPNSSRFGRLGQAASSKKGKXXXXXXXXGEDSGGDAEAGKRDGGGEGGEDAVNGLSASTRVSDFVGVQIKVSFAAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSENPTQFITTTFRPEMVAVASQCYGISHQNKV 232
            +AI RTFRGVS++F+ VF ELVP+GSG ++M+T                HP                                          + +  G G+G +   N    S  VS + GV++KV F+A GE ++MSQLSGGQKA+VA+ LIFAIQRCDPAPFYLFDE+DQALDSS+RA+VA+LIQRQA S ENPTQFI +TFRPE+V VA++CYGISHQNKV
Sbjct:  427 EAINRTFRGVSKHFTDVFNELVPNGSGELLMRTA---------------HP------------------------------------------SAENTGSGKGSQQDAN----SPHVSLYRGVEVKVRFSAVGENYMMSQLSGGQKALVAMGLIFAIQRCDPAPFYLFDELDQALDSSHRASVANLIQRQASSEENPTQFIVSTFRPELVKVANRCYGISHQNKV 590          
BLAST of mRNA_H-elongata_contig61878.13748.1 vs. uniprot
Match: A0A6V1TI32_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TI32_HETAK)

HSP 1 Score: 179 bits (455), Expect = 7.400e-52
Identity = 90/124 (72.58%), Postives = 107/124 (86.29%), Query Frame = 0
Query:  109 EGGEDAVNGLSASTRVSDFVGVQIKVSFAAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSENPTQFITTTFRPEMVAVASQCYGISHQNKV 232
            +G E++  G S+ T V+ FVGVQI+VSF+  GE FLMSQLSGGQKA+VALA+IFAIQRCDPAPFYLFDE+DQALDSSYRA VA+LIQ+QA   +NP QFIT+TFRPE+V+VA + YGISHQNKV
Sbjct:  144 DGAEESKGGDSSPTSVNQFVGVQIRVSFSGDGEQFLMSQLSGGQKALVALAIIFAIQRCDPAPFYLFDELDQALDSSYRAQVAALIQQQARDEDNPAQFITSTFRPELVSVADKTYGISHQNKV 267          
BLAST of mRNA_H-elongata_contig61878.13748.1 vs. uniprot
Match: A0A485LTG7_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LTG7_9STRA)

HSP 1 Score: 179 bits (454), Expect = 5.360e-48
Identity = 91/122 (74.59%), Postives = 105/122 (86.07%), Query Frame = 0
Query:  111 GEDAVNGLSASTRVSDFVGVQIKVSFAAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSENPTQFITTTFRPEMVAVASQCYGISHQNKV 232
            GED+ N     T  + FVGVQIKV+F   G+++LMSQLSGGQKA+VALA IFAIQRCDPAPFYLFDEIDQALDS++RAAVA+LIQRQAHS ENP QFIT+TFRPE+V+VA Q YGISHQNK+
Sbjct: 1059 GEDSAN----ETDTTTFVGVQIKVNFRGEGDSYLMSQLSGGQKALVALAFIFAIQRCDPAPFYLFDEIDQALDSTHRAAVAALIQRQAHSDENPAQFITSTFRPELVSVADQFYGISHQNKI 1176          
BLAST of mRNA_H-elongata_contig61878.13748.1 vs. uniprot
Match: A0A024U5Q8_9STRA (Structural maintenance of chromosomes protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U5Q8_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.350e-47
Identity = 92/122 (75.41%), Postives = 102/122 (83.61%), Query Frame = 0
Query:  111 GEDAVNGLSASTRVSDFVGVQIKVSFAAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSENPTQFITTTFRPEMVAVASQCYGISHQNKV 232
            GED  N     T  S FVGVQIKV+F   G+ +LMSQLSGGQKA+VALA IFAIQRCDPAPFYLFDEIDQALDS++RAAVA+LIQRQAHS ENP QFIT+TFRPE+V VA Q YGISHQNK+
Sbjct: 1059 GEDTDN----ETDTSSFVGVQIKVNFRGEGDAYLMSQLSGGQKALVALAFIFAIQRCDPAPFYLFDEIDQALDSTHRAAVAALIQRQAHSEENPAQFITSTFRPELVMVADQFYGISHQNKI 1176          
BLAST of mRNA_H-elongata_contig61878.13748.1 vs. uniprot
Match: A0A6A5A6S3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A6S3_9STRA)

HSP 1 Score: 174 bits (442), Expect = 1.420e-47
Identity = 86/106 (81.13%), Postives = 97/106 (91.51%), Query Frame = 0
Query:  127 FVGVQIKVSFAAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSENPTQFITTTFRPEMVAVASQCYGISHQNKV 232
            FVGVQIKV+F   G+++LMSQLSGGQKA+VALA IFAIQRCDPAPFYLFDEIDQALDS++RAAVA+LIQRQAHS ENP QFIT+TFRPE+V VA Q YGISHQNK+
Sbjct:  455 FVGVQIKVNFRGEGDSYLMSQLSGGQKALVALAFIFAIQRCDPAPFYLFDEIDQALDSTHRAAVAALIQRQAHSDENPAQFITSTFRPELVMVADQFYGISHQNKI 560          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61878.13748.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEU4_ECTSI5.470e-7367.97Structural maintenance of chromosomes protein n=1 ... [more]
A0A6H5KEG1_9PHAE3.150e-6966.38SMC hinge domain-containing protein n=1 Tax=Ectoca... [more]
W7T3Q8_9STRA7.130e-6155.51Structural maintenance of chromosomes protein n=2 ... [more]
A0A7S1D4Y7_CYCTE3.390e-6051.11Hypothetical protein n=2 Tax=Cyclophora tenuis Tax... [more]
A0A7S2ANS6_9STRA1.540e-5752.68Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0GJA6_9STRA1.940e-5349.33Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A6V1TI32_HETAK7.400e-5272.58Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A485LTG7_9STRA5.360e-4874.59Structural maintenance of chromosomes protein n=1 ... [more]
A0A024U5Q8_9STRA1.350e-4775.41Structural maintenance of chromosomes protein n=2 ... [more]
A0A6A5A6S3_9STRA1.420e-4781.13Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003395RecF/RecN/SMC, N-terminalPFAMPF02463SMC_Ncoord: 142..231
e-value: 5.1E-28
score: 98.0
NoneNo IPR availablePANTHERPTHR43977FAMILY NOT NAMEDcoord: 8..232
NoneNo IPR availablePANTHERPTHR43977:SF1STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3coord: 8..232
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 8..232

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61878contigH-elongata_contig61878:327..2839 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61878.13748.1mRNA_H-elongata_contig61878.13748.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig61878 327..2839 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig61878.13748.1 ID=prot_H-elongata_contig61878.13748.1|Name=mRNA_H-elongata_contig61878.13748.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=234bp
MHACAFVQAILRTFRGVSRNFSGVFQELVPSGSGRMIMKTTADAARQLEE
QEEEDHHPEGKGQVPNSSRFGRLGQAASSKKGKGKGKAKAKGEDSGGDAE
AGKRDGGGEGGEDAVNGLSASTRVSDFVGVQIKVSFAAAGETFLMSQLSG
GQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHS
SENPTQFITTTFRPEMVAVASQCYGISHQNKVI*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003395RecF/RecN/SMC_N
IPR027417P-loop_NTPase