mRNA_H-elongata_contig61878.13748.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61878.13748.1
Unique NamemRNA_H-elongata_contig61878.13748.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig61878.13748.1 vs. uniprot
Match: D8LEU4_ECTSI (Structural maintenance of chromosomes protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEU4_ECTSI)

HSP 1 Score: 251 bits (640), Expect = 5.470e-73
Identity = 157/231 (67.97%), Postives = 166/231 (71.86%), Query Frame = 1 
Query:   22 QAILRTFRGVSRNFSGVFQELVPSGSGRMIMKTTADAARQLEEQEEEDHHPEGKGQVPNSSRFG------RLGQAASSKKGKXXXXXXXXGEDSGGDAEAGKRDGGGEGGEDAVNGLSASTRVSDFVGVQIKVSFAAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSENPTQFITTTFRPEMVAVASQCYGISHQNKV 696
            +AILRTFRGVS+NFS VFQELVPSGSG M++KT+ADA                                   G   S KK    XXXXXX    GG+  AG         E+  NGLS +T VSDFVGVQIKVSF AAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSS+NPTQFITTTFRPEMVAVASQCYGISHQNKV
Sbjct: 1057 EAILRTFRGVSQNFSEVFQELVPSGSGVMVIKTSADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEAGNPGSGKKSSKGXXXXXXXXREGGEDGAGAD-------EEEPNGLSPTTLVSDFVGVQIKVSFVAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSDNPTQFITTTFRPEMVAVASQCYGISHQNKV 1280
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BLAST of mRNA_H-elongata_contig61878.13748.1 vs. uniprot
Match: A0A6H5KEG1_9PHAE (SMC hinge domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEG1_9PHAE)

HSP 1 Score: 238 bits (607), Expect = 3.150e-69
Identity = 152/229 (66.38%), Postives = 159/229 (69.43%), Query Frame = 1 
Query:   10 CAFVQAILRTFRGVSRNFSGVFQELVPSGSGRMIMKTTADAARQLEEQEEEDHHPEGKGQVPNSSRFGRLGQAASSKKGKXXXXXXXXGEDSGGDAEAGKRDGGGEGGEDAVNGLSASTRVSDFVGVQIKVSFAAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSENPTQFITTTFRPEMVAVASQCYGISHQNKV 696
            C    AILRTFRGVS+NFS VFQELVPSGSG M++KT+AD                                        XXXXXXXX             D      E+  NGLS +T VSDFVGVQIKVSF AAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSS+NPTQFITTTFRPEMVAVASQCYGISHQNKV
Sbjct:  634 CLLATAILRTFRGVSQNFSEVFQELVPSGSGVMVIKTSADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD------EEEPNGLSPTTLVSDFVGVQIKVSFVAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSDNPTQFITTTFRPEMVAVASQCYGISHQNKV 856
[Close]
BLAST of mRNA_H-elongata_contig61878.13748.1 vs. uniprot
Match: W7T3Q8_9STRA (Structural maintenance of chromosomes protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T3Q8_9STRA)

HSP 1 Score: 216 bits (550), Expect = 7.130e-61
Identity = 126/227 (55.51%), Postives = 153/227 (67.40%), Query Frame = 1 
Query:   22 QAILRTFRGVSRNFSGVFQELVPSGSGRMIMKTTADAARQLEEQEEEDHHPEGKGQVPNSSRFGRLGQAASSKKGKXXXXXXXXGEDSGGDAEAGKRDGGGEGGEDAVNGLSAST--RVSDFVGVQIKVSFAAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSENPTQFITTTFRPEMVAVASQCYGISHQNKV 696
            +AI+RTFRGVS++F+ VF+ELVP+G GRM+MKTTAD  + + E+ EE                  +G+     +            D G + E    DGG +G +    G SA    +VS F G+QI+VSF   G+  LM QLSGGQKA+VALALIFAIQRCDPAPFYLFDE+DQALDS+YRAAVA+LI RQAHS  NP QFIT+TFRPEMV VA +CYGISHQNKV
Sbjct: 1035 EAIIRTFRGVSKHFADVFKELVPNGYGRMVMKTTADTTQDINEETEE------------------VGKDDEDDQ------------DEGPEEEGLAADGGSKG-KQQRKGKSAEPPLKVSQFAGIQIQVSFTGTGDRHLMQQLSGGQKALVALALIFAIQRCDPAPFYLFDEVDQALDSTYRAAVAALINRQAHSETNPAQFITSTFRPEMVRVADRCYGISHQNKV 1230
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BLAST of mRNA_H-elongata_contig61878.13748.1 vs. uniprot
Match: A0A7S1D4Y7_CYCTE (Hypothetical protein n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D4Y7_CYCTE)

HSP 1 Score: 199 bits (505), Expect = 3.390e-60
Identity = 115/225 (51.11%), Postives = 140/225 (62.22%), Query Frame = 1 
Query:   22 QAILRTFRGVSRNFSGVFQELVPSGSGRMIMKTTADAARQLEEQEEEDHHPEGKGQVPNSSRFGRLGQAASSKKGKXXXXXXXXGEDSGGDAEAGKRDGGGEGGEDAVNGLSASTRVSDFVGVQIKVSFAAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSENPTQFITTTFRPEMVAVASQCYGISHQNKV 696
            +AI RTFRGVS +F  VF+ELVP+GSG +IMKT  D + + +E+E E    E K                                                         S    VS + GV IKV F++ GE F+MSQLSGGQKA+VALALIF+IQRCDPAPFYLFDE+DQALDS+YRAAVASL+Q QA+S+ENPTQFI +TFRPE+V+VA++CYGISHQNKV
Sbjct:   38 EAINRTFRGVSAHFKDVFKELVPNGSGELIMKTAVDESDETDEEEIESPQDEAKADP------------------------------------------------------SPDPDVSLYRGVGIKVRFSSVGENFMMSQLSGGQKALVALALIFSIQRCDPAPFYLFDELDQALDSTYRAAVASLVQHQANSAENPTQFIVSTFRPELVSVANRCYGISHQNKV 208
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BLAST of mRNA_H-elongata_contig61878.13748.1 vs. uniprot
Match: A0A7S2ANS6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ANS6_9STRA)

HSP 1 Score: 201 bits (512), Expect = 1.540e-57
Identity = 118/224 (52.68%), Postives = 141/224 (62.95%), Query Frame = 1 
Query:   22 QAILRTFRGVSRNFSGVFQELVPSGSGRMIMKTTADAARQLEEQEEEDHHPEGKGQVPNSSRFGRLGQAASSKKGKXXXXXXXXGEDSGGDAEAGKRDGGGEGGEDAVNGLSASTRVSDFVGVQIKVSFAAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSENPTQFITTTFRPEMVAVASQCYGISHQNK 693
            +AILRTF+GVS++FS VF ELVPSGSG +IM+T+ D    LEE +EE+   +G G  P  +                                                       VSDF GVQ+KVSF   GE FLMSQLSGGQKA+VAL+++FAIQRCDPAPFYLFDE+DQALDS+YRAAVA++IQRQA    NPTQFITTTFRPE+V VA++CYGIS QNK
Sbjct:  385 EAILRTFKGVSKHFSEVFSELVPSGSGHLIMRTSTD----LEEDDEEEG--DGSGGTPRMT-------------------------------------------------------VSDFEGVQVKVSFTPGGEVFLMSQLSGGQKAIVALSIVFAIQRCDPAPFYLFDELDQALDSTYRAAVAAMIQRQASHPTNPTQFITTTFRPELVNVAAKCYGISLQNK 547
[Close]
BLAST of mRNA_H-elongata_contig61878.13748.1 vs. uniprot
Match: A0A7S0GJA6_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GJA6_9STRA)

HSP 1 Score: 191 bits (485), Expect = 1.940e-53
Identity = 111/225 (49.33%), Postives = 139/225 (61.78%), Query Frame = 1 
Query:   22 QAILRTFRGVSRNFSGVFQELVPSGSGRMIMKTTADAARQLEEQEEEDHHPEGKGQVPNSSRFGRLGQAASSKKGKXXXXXXXXGEDSGGDAEAGKRDGGGEGGEDAVNGLSASTRVSDFVGVQIKVSFAAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSENPTQFITTTFRPEMVAVASQCYGISHQNKV 696
            +AI RTFRGVS++F+ VF ELVP+GSG ++M+T                HP                                          + +  G G+G +   N    S  VS + GV++KV F+A GE ++MSQLSGGQKA+VA+ LIFAIQRCDPAPFYLFDE+DQALDSS+RA+VA+LIQRQA S ENPTQFI +TFRPE+V VA++CYGISHQNKV
Sbjct:  427 EAINRTFRGVSKHFTDVFNELVPNGSGELLMRTA---------------HP------------------------------------------SAENTGSGKGSQQDAN----SPHVSLYRGVEVKVRFSAVGENYMMSQLSGGQKALVAMGLIFAIQRCDPAPFYLFDELDQALDSSHRASVANLIQRQASSEENPTQFIVSTFRPELVKVANRCYGISHQNKV 590
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BLAST of mRNA_H-elongata_contig61878.13748.1 vs. uniprot
Match: A0A6V1TI32_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TI32_HETAK)

HSP 1 Score: 179 bits (455), Expect = 7.400e-52
Identity = 90/124 (72.58%), Postives = 107/124 (86.29%), Query Frame = 1 
Query:  325 EGGEDAVNGLSASTRVSDFVGVQIKVSFAAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSENPTQFITTTFRPEMVAVASQCYGISHQNKV 696
            +G E++  G S+ T V+ FVGVQI+VSF+  GE FLMSQLSGGQKA+VALA+IFAIQRCDPAPFYLFDE+DQALDSSYRA VA+LIQ+QA   +NP QFIT+TFRPE+V+VA + YGISHQNKV
Sbjct:  144 DGAEESKGGDSSPTSVNQFVGVQIRVSFSGDGEQFLMSQLSGGQKALVALAIIFAIQRCDPAPFYLFDELDQALDSSYRAQVAALIQQQARDEDNPAQFITSTFRPELVSVADKTYGISHQNKV 267
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BLAST of mRNA_H-elongata_contig61878.13748.1 vs. uniprot
Match: A0A485LTG7_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LTG7_9STRA)

HSP 1 Score: 179 bits (454), Expect = 5.360e-48
Identity = 91/122 (74.59%), Postives = 105/122 (86.07%), Query Frame = 1 
Query:  331 GEDAVNGLSASTRVSDFVGVQIKVSFAAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSENPTQFITTTFRPEMVAVASQCYGISHQNKV 696
            GED+ N     T  + FVGVQIKV+F   G+++LMSQLSGGQKA+VALA IFAIQRCDPAPFYLFDEIDQALDS++RAAVA+LIQRQAHS ENP QFIT+TFRPE+V+VA Q YGISHQNK+
Sbjct: 1059 GEDSAN----ETDTTTFVGVQIKVNFRGEGDSYLMSQLSGGQKALVALAFIFAIQRCDPAPFYLFDEIDQALDSTHRAAVAALIQRQAHSDENPAQFITSTFRPELVSVADQFYGISHQNKI 1176
[Close]
BLAST of mRNA_H-elongata_contig61878.13748.1 vs. uniprot
Match: A0A024U5Q8_9STRA (Structural maintenance of chromosomes protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U5Q8_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.350e-47
Identity = 92/122 (75.41%), Postives = 102/122 (83.61%), Query Frame = 1 
Query:  331 GEDAVNGLSASTRVSDFVGVQIKVSFAAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSENPTQFITTTFRPEMVAVASQCYGISHQNKV 696
            GED  N     T  S FVGVQIKV+F   G+ +LMSQLSGGQKA+VALA IFAIQRCDPAPFYLFDEIDQALDS++RAAVA+LIQRQAHS ENP QFIT+TFRPE+V VA Q YGISHQNK+
Sbjct: 1059 GEDTDN----ETDTSSFVGVQIKVNFRGEGDAYLMSQLSGGQKALVALAFIFAIQRCDPAPFYLFDEIDQALDSTHRAAVAALIQRQAHSEENPAQFITSTFRPELVMVADQFYGISHQNKI 1176
[Close]
BLAST of mRNA_H-elongata_contig61878.13748.1 vs. uniprot
Match: A0A6A5A6S3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A6S3_9STRA)

HSP 1 Score: 174 bits (442), Expect = 1.420e-47
Identity = 86/106 (81.13%), Postives = 97/106 (91.51%), Query Frame = 1 
Query:  379 FVGVQIKVSFAAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSENPTQFITTTFRPEMVAVASQCYGISHQNKV 696
            FVGVQIKV+F   G+++LMSQLSGGQKA+VALA IFAIQRCDPAPFYLFDEIDQALDS++RAAVA+LIQRQAHS ENP QFIT+TFRPE+V VA Q YGISHQNK+
Sbjct:  455 FVGVQIKVNFRGEGDSYLMSQLSGGQKALVALAFIFAIQRCDPAPFYLFDEIDQALDSTHRAAVAALIQRQAHSDENPAQFITSTFRPELVMVADQFYGISHQNKI 560
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61878.13748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEU4_ECTSI5.470e-7367.97Structural maintenance of chromosomes protein n=1 ... [more]
A0A6H5KEG1_9PHAE3.150e-6966.38SMC hinge domain-containing protein n=1 Tax=Ectoca... [more]
W7T3Q8_9STRA7.130e-6155.51Structural maintenance of chromosomes protein n=2 ... [more]
A0A7S1D4Y7_CYCTE3.390e-6051.11Hypothetical protein n=2 Tax=Cyclophora tenuis Tax... [more]
A0A7S2ANS6_9STRA1.540e-5752.68Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0GJA6_9STRA1.940e-5349.33Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A6V1TI32_HETAK7.400e-5272.58Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A485LTG7_9STRA5.360e-4874.59Structural maintenance of chromosomes protein n=1 ... [more]
A0A024U5Q8_9STRA1.350e-4775.41Structural maintenance of chromosomes protein n=2 ... [more]
A0A6A5A6S3_9STRA1.420e-4781.13Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61878contigH-elongata_contig61878:327..2839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score255.8
Seed ortholog evalue2e-65
Seed eggNOG ortholog2880.D8LEU4
Preferred nameSMC3
KEGG koko:K06669
KEGG Pathwayko04110,ko04111,ko04113,ko04114,map04110,map04111,map04113,map04114
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000724,GO:0000725,GO:0000775,GO:0000779,GO:0000780,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000795,GO:0000798,GO:0000800,GO:0000819,GO:0000922,GO:0001736,GO:0001737,GO:0001738,GO:0002009,GO:0002165,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003774,GO:0003777,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005604,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0005911,GO:0006139,GO:0006259,GO:0006275,GO:0006281,GO:0006302,GO:0006310,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007088,GO:0007127,GO:0007129,GO:0007130,GO:0007131,GO:0007135,GO:0007164,GO:0007275,GO:0007346,GO:0007399,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008092,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008278,GO:0008544,GO:0009506,GO:0009507,GO:0009536,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009913,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010948,GO:0015630,GO:0015631,GO:0016043,GO:0016301,GO:0016310,GO:0016363,GO:0016462,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0019827,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022008,GO:0022402,GO:0022413,GO:0022414,GO:0022607,GO:0030030,GO:0030054,GO:0030154,GO:0030182,GO:0030435,GO:0030437,GO:0030855,GO:0030892,GO:0030893,GO:0031012,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032505,GO:0032875,GO:0032876,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0033554,GO:0034085,GO:0034086,GO:0034087,GO:0034088,GO:0034293,GO:0034399,GO:0034502,GO:0034613,GO:0034641,GO:0034990,GO:0034991,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0035315,GO:0035316,GO:0035317,GO:0035821,GO:0035825,GO:0036033,GO:0036211,GO:0040012,GO:0040017,GO:0042623,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043388,GO:0043412,GO:0043900,GO:0043902,GO:0043903,GO:0043934,GO:0043935,GO:0044085,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044403,GO:0044419,GO:0044421,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044788,GO:0044789,GO:0044791,GO:0044794,GO:0044877,GO:0045132,GO:0045143,GO:0045144,GO:0045786,GO:0045934,GO:0046483,GO:0046982,GO:0046983,GO:0048285,GO:0048468,GO:0048487,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048524,GO:0048563,GO:0048569,GO:0048646,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0048869,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051098,GO:0051099,GO:0051101,GO:0051128,GO:0051171,GO:0051172,GO:0051177,GO:0051179,GO:0051276,GO:0051321,GO:0051493,GO:0051641,GO:0051702,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051817,GO:0051851,GO:0055044,GO:0060147,GO:0060236,GO:0060255,GO:0060429,GO:0060562,GO:0060966,GO:0060968,GO:0061775,GO:0061780,GO:0061982,GO:0061983,GO:0062022,GO:0062023,GO:0065007,GO:0065009,GO:0070013,GO:0070192,GO:0070193,GO:0070507,GO:0070601,GO:0070727,GO:0070840,GO:0071168,GO:0071704,GO:0071840,GO:0071921,GO:0071960,GO:0071962,GO:0072686,GO:0080090,GO:0090169,GO:0090224,GO:0090304,GO:0090329,GO:0097159,GO:0097431,GO:0098687,GO:0098727,GO:0098813,GO:0099086,GO:0120036,GO:0140013,GO:0140014,GO:0140096,GO:1900368,GO:1901360,GO:1901363,GO:1901564,GO:1901673,GO:1902115,GO:1902186,GO:1902188,GO:1903046,GO:1903047,GO:1903900,GO:1903902,GO:1990414,GO:2000104,GO:2000112,GO:2000113
EggNOG free text desc.maintenance of mitotic sister chromatid cohesion, centromeric
EggNOG OGsCOG1196@1,KOG0964@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00535,ko03036
Hectar predicted targeting categoryother localisation
Exons4
Model size702
Cds size702
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61878.13748.1prot_H-elongata_contig61878.13748.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61878 327..2839 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930998.3195949-CDS-H-elongata_contig61878:326..5241622930998.3195949-CDS-H-elongata_contig61878:326..524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61878 327..524 +
1691679656.1430488-CDS-H-elongata_contig61878:326..5241691679656.1430488-CDS-H-elongata_contig61878:326..524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61878 327..524 +
1622930998.3353543-CDS-H-elongata_contig61878:1175..13761622930998.3353543-CDS-H-elongata_contig61878:1175..1376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61878 1176..1376 +
1691679656.1529598-CDS-H-elongata_contig61878:1175..13761691679656.1529598-CDS-H-elongata_contig61878:1175..1376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61878 1176..1376 +
1622930998.348012-CDS-H-elongata_contig61878:1938..20791622930998.348012-CDS-H-elongata_contig61878:1938..2079Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61878 1939..2079 +
1691679656.1605825-CDS-H-elongata_contig61878:1938..20791691679656.1605825-CDS-H-elongata_contig61878:1938..2079Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61878 1939..2079 +
1622930998.3599439-CDS-H-elongata_contig61878:2677..28391622930998.3599439-CDS-H-elongata_contig61878:2677..2839Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61878 2678..2839 +
1691679656.1709275-CDS-H-elongata_contig61878:2677..28391691679656.1709275-CDS-H-elongata_contig61878:2677..2839Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61878 2678..2839 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61878.13748.1

>prot_H-elongata_contig61878.13748.1 ID=prot_H-elongata_contig61878.13748.1|Name=mRNA_H-elongata_contig61878.13748.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=234bp
MHACAFVQAILRTFRGVSRNFSGVFQELVPSGSGRMIMKTTADAARQLEE
QEEEDHHPEGKGQVPNSSRFGRLGQAASSKKGKGKGKAKAKGEDSGGDAE
AGKRDGGGEGGEDAVNGLSASTRVSDFVGVQIKVSFAAAGETFLMSQLSG
GQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHS
SENPTQFITTTFRPEMVAVASQCYGISHQNKVI*
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mRNA from alignment at H-elongata_contig61878:327..2839+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61878.13748.1 ID=mRNA_H-elongata_contig61878.13748.1|Name=mRNA_H-elongata_contig61878.13748.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2513bp|location=Sequence derived from alignment at H-elongata_contig61878:327..2839+ (Himanthalia elongata Himel1 dioecious)
ATGCATGCATGCGCATTCGTCCAGGCAATCCTCCGCACATTCAGGGGAGT
CAGCCGAAACTTCTCGGGAGTTTTTCAGGAGCTAGTGCCGTCTGGATCCG
GTCGGATGATTATGAAAACGACGGCCGATGCTGCCCGGCAGCTAGAAGAA
CAAGAGGAAGAAGATCATCACCCCGAAGGAAAAGGCCAGGTGCCCAACGT
GTCTCCGAGAAGGGAATGACAATGGAGAAGGGTGTACAATCCTATATCTT
CATGTTTGGAGAAAATGTCTCGGGGGGGGGTGTACTCGGCTACTGATAAT
ACTATTTTACAGCTTGGGGGGGGGGGGGGGGGGGGCGATAAAAACATTAC
GGTATATTTTATTGTGTATGACTATTTGAGGATCGCCGAGATGTGTGCAG
AACGTTGGGGGCGTGAATACCAGCAATGTGTTCGCCCCCTCGTGGTGGAC
GTTCGTAGCAGTCTTTGTAAGTAGTGTGGCTGGCGAACGTGACTTGTGTA
AGTGCGTCTTGAAGAACGACAGGGAGGAAAATTCCCCTGTATTGAGTATT
GATGGCGCGTACCGCCGGCCGGCACCTTCATGTGAGATTGAGCTGGTGCG
GATTGGGTATTCCAAGACGCTAAAAATGAGCGTGAAATACCAAATCAAGC
GCGTTGCATCGAGAACGTTCTTCAATGAAATGATATGGGTATTTTCGCCT
CTCTTCCTATATTTTTCTCCCTCGAGCACGCACGTACGCTTATGCGTAGC
TCTATTATCGATGATACAAGGGCTTTTTTGCACGAAGCACTTTTTTTAGT
TTTGAGAATAAAGGATGGAAGAGTAACTTCTTGACGCGCCACATTTAAGT
CTTCGCGCTTTGGTCGTCTTGGGCAGGCCGCCTCGAGCAAGAAGGGTAAG
GGCAAAGGGAAAGCAAAGGCCAAGGGGGAGGATAGCGGAGGAGACGCAGA
GGCGGGGAAGCGGGACGGGGGCGGAGAAGGGGGAGAGGACGCTGTGAATG
GCCTCTCGGCTTCCACCAGGGTCAGCGACTTCGTCGGGGTGCAGATCAAG
GTGAGCGTGTGTTACGAATTGAACTTTGGGTTTTGTTCCAAGGGTGGGAA
GCATCTGCGACCAAGGATCGCGGAAATAAATATGTATTGATATGTGGGTG
ACGGCTAATTGTGCTGAGTGGTGGTCGCTGATGATCGGCGCAGCAAAGCG
GCTTTCACCTGATAAAGGCCAGAGCTGAATGGGCAACGGAGGAGAACATC
GACAGCCGCGGTGCTTCCCTCCCCCCCCCCCCCCCCCCCCACCCAAAAAA
ACATGTCTTTTTTTTTTTCGCCCATGCAAAACACAGGTGCGCCCCGACAG
CNNNNNNNNNNCCCTCCCCCCCCACCCACCCACACACACACACAAGTTTT
TGTTCATTCGTCGCTACAGGACAAATGGGATGCACTTGAGCCGACTTTGT
GGCTACAGGTTGGCGAGCCAGCGCACTGATTTCATAGTTATATAGAGATT
GAAGAGCAAAGGAGGGAAAAATACTTTAACGTCTCTGTATCTTTCTTTCT
CTCTCTCTCTCTCTCTCGAACGTTTTTCGACGGACGTCTTTTTGTGTCGT
GTATTGCATCAGGTTTCCTTCGCGGCGGCGGGGGAAACGTTTCTCATGTC
ACAGCTCTCCGGAGGGCAGAAGGCTGTCGTTGCCCTTGCGCTTATTTTTG
CCATCCAGCGGTGTGACCCTGCGCCATTTTACCTGTTCGACGAGATCGAT
CAGGTGCGTTCTGACTCCGGTTCGAGTCTAGGTTTCGGTTTCGGGGGGGG
GGGGGGGTTCCGCCCCTTTTCGCTTGGTTGGGTTTTGTTTACCTTCGCTT
GGTTCCCCNNNNNNNNNNCCCTCTTTTTTTCTCGTTTGGGCGTGTGGGTG
GGGGTGGTCTGTGTTGGTGGGTGTGGTTTTTTTTGGGGGGGGGGGGGGGG
GGGGGGGTTCCGCCGCTTTTCGCTTGGTTGCGTTTTGTTACACTTCGCTT
CGTTACTCCTTGCAATTGGAGAGGCCGATGCTCCGGTGTTCGGGGGTGGG
CGGTAGTTGGTTATTTGCGTGGTTCTTGTCCAAAAAGTGTGGCTCTGATG
TTATTGCTGCTGCGCGGAAGTGTAGCTCTAATAAAACACTTATTTCATAT
TTTGTCTCATGAAAAGAAAAAGAAAATAACAAAAGTCCTCGTTCGCTGGA
ATCCAACCGCTCCACGAGCGCTATCTGCACCTGCCCCCGCTTCCCTTTTC
TCCTCTTTCCGTTCAGTTGCCCGTATCCCATCCACCACAAAACGAAACCT
CTTCTTATTTCTCTGCTTTTCGGCACGCCGATATTGATCTCGATCCGTCA
GGCCTTAGACAGTAGCTACCGGGCAGCGGTGGCTTCTCTCATCCAGCGCC
AGGCGCACTCCTCAGAGAACCCGACGCAGTTCATCACCACCACGTTTCGC
CCGGAGATGGTGGCCGTCGCCAGCCAGTGCTACGGTATTTCCCACCAGAA
CAAGGTGATATGA
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Coding sequence (CDS) from alignment at H-elongata_contig61878:327..2839+

>mRNA_H-elongata_contig61878.13748.1 ID=mRNA_H-elongata_contig61878.13748.1|Name=mRNA_H-elongata_contig61878.13748.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1404bp|location=Sequence derived from alignment at H-elongata_contig61878:327..2839+ (Himanthalia elongata Himel1 dioecious)
ATGCATGCATGCGCATTCGTCCAGGCAATCCTCCGCACATTCAGGGGAGT
CAGCCGAAACTTCTCGGGAGTTTTTCAGGAGCTAGTGCCGTCTGGATCCG
GTCGGATGATTATGAAAACGACGGCCGATGCTGCCCGGCAGCTAGAAGAA
CAAGAGGAAGAAGATCATCACCCCGAAGGAAAAGGCCAGGTGCCCAACAT
GCATGCATGCGCATTCGTCCAGGCAATCCTCCGCACATTCAGGGGAGTCA
GCCGAAACTTCTCGGGAGTTTTTCAGGAGCTAGTGCCGTCTGGATCCGGT
CGGATGATTATGAAAACGACGGCCGATGCTGCCCGGCAGCTAGAAGAACA
AGAGGAAGAAGATCATCACCCCGAAGGAAAAGGCCAGGTGCCCAACTCTT
CGCGCTTTGGTCGTCTTGGGCAGGCCGCCTCGAGCAAGAAGGGTAAGGGC
AAAGGGAAAGCAAAGGCCAAGGGGGAGGATAGCGGAGGAGACGCAGAGGC
GGGGAAGCGGGACGGGGGCGGAGAAGGGGGAGAGGACGCTGTGAATGGCC
TCTCGGCTTCCACCAGGGTCAGCGACTTCGTCGGGGTGCAGATCAAGTCT
TCGCGCTTTGGTCGTCTTGGGCAGGCCGCCTCGAGCAAGAAGGGTAAGGG
CAAAGGGAAAGCAAAGGCCAAGGGGGAGGATAGCGGAGGAGACGCAGAGG
CGGGGAAGCGGGACGGGGGCGGAGAAGGGGGAGAGGACGCTGTGAATGGC
CTCTCGGCTTCCACCAGGGTCAGCGACTTCGTCGGGGTGCAGATCAAGGT
TTCCTTCGCGGCGGCGGGGGAAACGTTTCTCATGTCACAGCTCTCCGGAG
GGCAGAAGGCTGTCGTTGCCCTTGCGCTTATTTTTGCCATCCAGCGGTGT
GACCCTGCGCCATTTTACCTGTTCGACGAGATCGATCAGGTTTCCTTCGC
GGCGGCGGGGGAAACGTTTCTCATGTCACAGCTCTCCGGAGGGCAGAAGG
CTGTCGTTGCCCTTGCGCTTATTTTTGCCATCCAGCGGTGTGACCCTGCG
CCATTTTACCTGTTCGACGAGATCGATCAGGCCTTAGACAGTAGCTACCG
GGCAGCGGTGGCTTCTCTCATCCAGCGCCAGGCGCACTCCTCAGAGAACC
CGACGCAGTTCATCACCACCACGTTTCGCCCGGAGATGGTGGCCGTCGCC
AGCCAGTGCTACGGTATTTCCCACCAGAACAAGGTGATATGAGCCTTAGA
CAGTAGCTACCGGGCAGCGGTGGCTTCTCTCATCCAGCGCCAGGCGCACT
CCTCAGAGAACCCGACGCAGTTCATCACCACCACGTTTCGCCCGGAGATG
GTGGCCGTCGCCAGCCAGTGCTACGGTATTTCCCACCAGAACAAGGTGAT
ATGA
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