prot_H-elongata_contig60536.13598.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig60536.13598.1
Unique Name	prot_H-elongata_contig60536.13598.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	233

Homology

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BLAST of mRNA_H-elongata_contig60536.13598.1 vs. uniprot
Match: D7G9D8_ECTSI (MutL protein homolog 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9D8_ECTSI)

HSP 1 Score: 272 bits (695), Expect = 2.320e-80
Identity = 146/247 (59.11%), Postives = 179/247 (72.47%), Query Frame = 0

Query:    1 QVIREGQTLHFGPANAPLRTGTTVTVRDAFFKWPVRRKAMNQAAEMLRIKDQIARMALVNNSVSITVVDSAKSKLVLRAAATGSVIRAFSQVFASDKLSIAQKIAFEF--------------KQFRITGYLSPPSSTACHWSKEFQMVYVNRRCVRRLDFLQKTINAAFAPCLGLLAGRGGSDGQRVIRRVRDPNASSGQRQELFPVFVLNLECPRGEVDIMADPDKTLVEFCDWPSAKNAPVALLL 233
            +V+REG+ LHFGP+ AP+R GT VT+RDAFFKWPVRRKA N+  EM RIKD ++RMALVNNSV+ITV DSAKSK+V+RA ATGS  R F+QVF+SDKLS+A+K+                    F I    S     A  +S  +    +  RCV  +  L   +NAAFAPC+ LLAGRGG+DGQ V+RRVR+PNASSGQRQELFPVFVLNLECPR EVDIM+DP+KT VEF DW +A+NA +++LL
Sbjct:  135 KVVREGEVLHFGPSRAPVRAGTIVTLRDAFFKWPVRRKAANEVTEMTRIKDCVSRMALVNNSVAITVRDSAKSKVVVRATATGSATRTFAQVFSSDKLSLARKVQIPVCVTSSAVHPLWRIHLPFCICSIGSSSGMVAFPFSTRYDTSQL--RCVPFMVLLL-AVNAAFAPCMALLAGRGGADGQGVVRRVRNPNASSGQRQELFPVFVLNLECPRSEVDIMSDPEKTWVEFSDWAAARNACISMLL 378

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BLAST of mRNA_H-elongata_contig60536.13598.1 vs. uniprot
Match: A0A6H5JWV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWV7_9PHAE)

HSP 1 Score: 230 bits (587), Expect = 7.200e-66
Identity = 132/274 (48.18%), Postives = 155/274 (56.57%), Query Frame = 0

Query:    1 QVIREGQTLHFGPANAPLRTGTTVTVRDAFFKWPVRRKAMNQAAEMLRIKDQIARMALVNNSVSITVVDSAKSKLVLRAAATGSVIRAFSQVFASDKLSIAQKI-----------------------------------------AFEFKQFRITGYLSPPSSTACHWSKEFQMVYVNRRCVRRLDFLQKTINAAFAPCLGLLAGRGGSDGQRVIRRVRDPNASSGQRQELFPVFVLNLECPRGEVDIMADPDKTLVEFCDWPSAKNAPVALLL 233
            +V+REG+ LHFGP+ AP R GT VT+RDAFFKWPVRRKA N+  EM RIKD ++RMALVNNSV+ITV DSAKSK V+RA ATGS  R F+QVF+SDKLS+A+K+                                         AF FKQFRITGYLSPPSSTACHWSKEFQ                                                        ELFPVFVLNLECPR EVDIM+DP+KT +EF DW +A+NA +++LL
Sbjct:   86 KVVREGEVLHFGPSRAPARAGTIVTLRDAFFKWPVRRKAANEVTEMTRIKDCVSRMALVNNSVAITVQDSAKSKEVVRATATGSATRTFAQVFSSDKLSLARKVEFSVCVTSKAANPRWWIHLPFCICSIGSRSGMVGFSIFHALAFNFKQFRITGYLSPPSSTACHWSKEFQ--------------------------------------------------------ELFPVFVLNLECPRSEVDIMSDPEKTWIEFSDWAAARNACISMLL 303

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BLAST of mRNA_H-elongata_contig60536.13598.1 vs. uniprot
Match: UPI0010A01F08 (DNA mismatch repair protein Mlh3 isoform X1 n=5 Tax=Murinae TaxID=39107 RepID=UPI0010A01F08)

HSP 1 Score: 109 bits (273), Expect = 8.510e-24
Identity = 65/207 (31.40%), Postives = 116/207 (56.04%), Query Frame = 0

Query:   21 GTTVTVRDAFFKWPVRRKAMNQAAEMLRIKDQIARMALVNNSVSITVVDSAKSKLVLRAAATGSVIRAFSQVFASDKLSIAQKIAFEFKQFRITGYLSPPSSTACHWSKEFQMVYVNRRCVRR------LDFLQKTINAAFAPCLGLLAGRGGSDGQRVIRRVRDPNASSGQRQELFPVFVLNLECPRGEVDIMADPDKTLVEFCDW 221
            GTTVTV + F+++PVRRK+M+   E  +++ ++  ++L++ SVS ++ + A   +VL+   T  +   F Q++   K    ++I F++K+F  +GY+S       H++K  Q ++VNRR V R      +DFL +  +    P       + GS  +++    R  +AS     EL  ++V+N++CP  E D+  +P KTL+EF +W
Sbjct:  143 GTTVTVYNLFYQFPVRRKSMDPRLEFEKVRQRVEAVSLMHPSVSFSLRNDASGSMVLQLPKTKDICSRFCQIYGLGKSQKLREIHFKYKEFEFSGYISSEG----HYNKNMQFLFVNRRLVLRTKLHKLIDFLLRKESIICRP-------KNGSASRQMNSSPRHRSAS-----ELHGIYVINVQCPFCEYDVCIEPAKTLIEFQNW 333

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BLAST of mRNA_H-elongata_contig60536.13598.1 vs. uniprot
Match: Q8R407_MOUSE (MutL-like protein 3 (Fragment) n=1 Tax=Mus musculus TaxID=10090 RepID=Q8R407_MOUSE)

HSP 1 Score: 106 bits (265), Expect = 1.030e-23
Identity = 62/207 (29.95%), Postives = 114/207 (55.07%), Query Frame = 0

Query:   21 GTTVTVRDAFFKWPVRRKAMNQAAEMLRIKDQIARMALVNNSVSITVVDSAKSKLVLRAAATGSVIRAFSQVFASDKLSIAQKIAFEFKQFRITGYLSPPSSTACHWSKEFQMVYVNRRCVRR------LDFLQKTINAAFAPCLGLLAGRGGSDGQRVIRRVRDPNASSGQRQELFPVFVLNLECPRGEVDIMADPDKTLVEFCDW 221
            GTTVTV + F+++PVRRK+M+   E  +++ ++  ++L++ S+S ++ +     +VL+   T  +   F Q++   K    ++I F++K+F  +GY+S    +  H++K  Q ++VNRR V R      +DFL +  +    P       + GS  +++    R  +AS     EL  ++V+N++CP  E D+  +P KTL+E   W
Sbjct:  143 GTTVTVYNLFYQFPVRRKSMDPRLEFEKVRQRVEALSLMHPSISFSLRNDVSGSMVLQLPKTKDICSRFCQIYGLGKSQKLREIRFKYKEFEFSGYIS----SEAHYNKNMQFLFVNRRLVLRTKLHKLIDFLLRKESIICRP-------KNGSASRQMNSSPRHRSAS-----ELHGIYVINVQCPFCEYDVCIEPAKTLIELQSW 333

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BLAST of mRNA_H-elongata_contig60536.13598.1 vs. uniprot
Match: UPI001114CCDB (DNA mismatch repair protein Mlh3 isoform X3 n=2 Tax=Mus pahari TaxID=10093 RepID=UPI001114CCDB)

HSP 1 Score: 108 bits (271), Expect = 1.540e-23
Identity = 63/207 (30.43%), Postives = 116/207 (56.04%), Query Frame = 0

Query:   21 GTTVTVRDAFFKWPVRRKAMNQAAEMLRIKDQIARMALVNNSVSITVVDSAKSKLVLRAAATGSVIRAFSQVFASDKLSIAQKIAFEFKQFRITGYLSPPSSTACHWSKEFQMVYVNRRCVRR------LDFLQKTINAAFAPCLGLLAGRGGSDGQRVIRRVRDPNASSGQRQELFPVFVLNLECPRGEVDIMADPDKTLVEFCDW 221
            GTTVTV + F+++PVRRK+M+   E  +++ ++  ++L++ S+S ++ +     +VL+   T  +   F Q++   K    ++I F++K+F  +GY+S    +  H++K  Q ++VNRR V R      +DFL +  +    P       + GS  +++    R  +AS     EL  ++V+N++CP  E D+  +P KTL+EF +W
Sbjct:  143 GTTVTVYNLFYQFPVRRKSMDPRLEFEKVRQRVEALSLMHPSISFSLRNDVSGSMVLQLPKTKDICSRFCQIYGLGKSQKLREIHFKYKEFEFSGYIS----SEAHYNKNMQFLFVNRRLVLRTKLHKLIDFLLRKESIICRP-------KNGSASRQMNSSPRHRSAS-----ELHGIYVINVQCPFCEYDVCIEPAKTLIEFQNW 333

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BLAST of mRNA_H-elongata_contig60536.13598.1 vs. uniprot
Match: Q68FG1_MOUSE (MutL homolog 3 n=12 Tax=Mus TaxID=10088 RepID=Q68FG1_MOUSE)

HSP 1 Score: 108 bits (271), Expect = 1.570e-23
Identity = 63/207 (30.43%), Postives = 115/207 (55.56%), Query Frame = 0

Query:   21 GTTVTVRDAFFKWPVRRKAMNQAAEMLRIKDQIARMALVNNSVSITVVDSAKSKLVLRAAATGSVIRAFSQVFASDKLSIAQKIAFEFKQFRITGYLSPPSSTACHWSKEFQMVYVNRRCVRR------LDFLQKTINAAFAPCLGLLAGRGGSDGQRVIRRVRDPNASSGQRQELFPVFVLNLECPRGEVDIMADPDKTLVEFCDW 221
            GTTVTV + F+++PVRRK+M+   E  +++ ++  ++L++ S+S ++ +     +VL+   T  +   F Q++   K    ++I F++K+F  +GY+S    +  H++K  Q ++VNRR V R      +DFL +  +    P       + GS  +++    R  +AS     EL  ++V+N++CP  E D+  +P KTL+EF  W
Sbjct:  143 GTTVTVYNLFYQFPVRRKSMDPRLEFEKVRQRVEALSLMHPSISFSLRNDVSGSMVLQLPKTKDICSRFCQIYGLGKSQKLREIRFKYKEFEFSGYIS----SEAHYNKNMQFLFVNRRLVLRTKLHKLIDFLLRKESIICRP-------KNGSASRQMNSSPRHRSAS-----ELHGIYVINVQCPFCEYDVCIEPAKTLIEFQSW 333

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BLAST of mRNA_H-elongata_contig60536.13598.1 vs. uniprot
Match: UPI00201ED574 (DNA mismatch repair protein Mlh3-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201ED574)

HSP 1 Score: 107 bits (268), Expect = 4.030e-23
Identity = 65/202 (32.18%), Postives = 108/202 (53.47%), Query Frame = 0

Query:   21 GTTVTVRDAFFKWPVRRKAMNQAAEMLRIKDQIARMALVNNSVSITVVDSAKSKLVLRAAATGSVIRAFSQVFASDKLSIAQKIAFEFKQFRITGYLSPPSSTACHWSKEFQMVYVNRRCVRRLDFLQKTINAAFAPCLGLLAGRGGSDGQRVIRRVRDPNASSGQRQ-ELFPVFVLNLECPRGEVDIMADPDKTLVEFCDW 221
            GTTVT  D F+  PVR+K MN+A E+ RI+ ++  +AL++ SVS ++ +     ++L+   + S+++AF  +F + K    ++++ +   F + G++        H SK  Q VYVN R V +   + K +N      L L      ++      +   P  SS  +Q + + +FV+N++CP    DI  DP KTLVEF DW
Sbjct:  143 GTTVTAHDLFYSLPVRKKNMNEALELERIRYRVEGIALIHPSVSFSLRNDITGNILLQTQKSSSMLKAFMHLFGTGKSKCLREVSLQKDCFDVEGFIGKEG----HSSKSLQFVYVNGRLVLKTK-VHKILNHVLRRSLVLKRKGSNNEDSSGTTQTAGPQTSSPLKQGDKYAMFVINVKCPLDAYDITFDPAKTLVEFKDW 339

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BLAST of mRNA_H-elongata_contig60536.13598.1 vs. uniprot
Match: UPI001EE5DAFC (uncharacterized protein LOC124264450 n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE5DAFC)

HSP 1 Score: 107 bits (267), Expect = 5.480e-23
Identity = 66/202 (32.67%), Postives = 109/202 (53.96%), Query Frame = 0

Query:   21 GTTVTVRDAFFKWPVRRKAMNQAAEMLRIKDQIARMALVNNSVSITVVDSAKSKLVLRAAATGSVIRAFSQVFASDKLSIAQKIAFEFKQFRITGYLSPPSSTACHWSKEFQMVYVNRRCVRRLDFLQKTINAAFAPCLGLLAGRGGSDGQRVIRRVRDPNASSGQRQ-ELFPVFVLNLECPRGEVDIMADPDKTLVEFCDW 221
            GTTVT  D F+  PVR+K MN+A E+ RI+ ++  +AL++ SVS ++ +     ++L+   + SV+ AF  +F + K    ++++ +   F++ G++        H SK  Q VYVN R V +   + K +N      L L       +G     ++    +SS  +Q + + +FV+N++CP    DI  DP KTLVEF DW
Sbjct:  143 GTTVTAHDLFYSLPVRKKNMNEALELERIRYRVEGIALIHPSVSFSLRNDINGNILLQTQKSSSVLTAFMHLFGTGKSKCLREVSLQEGCFQVEGFIGKEG----HCSKSLQFVYVNGRLVLKTK-VHKILNHTLGRSLVLKRKGSNFEGSMGGSQLAGAPSSSPPKQGDKYAMFVINVKCPLDAYDITFDPAKTLVEFKDW 339

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BLAST of mRNA_H-elongata_contig60536.13598.1 vs. uniprot
Match: D4ADG4_RAT (MutL homolog 3 n=10 Tax=Tetrapoda TaxID=32523 RepID=D4ADG4_RAT)

HSP 1 Score: 107 bits (266), Expect = 7.260e-23
Identity = 61/207 (29.47%), Postives = 115/207 (55.56%), Query Frame = 0

Query:   21 GTTVTVRDAFFKWPVRRKAMNQAAEMLRIKDQIARMALVNNSVSITVVDSAKSKLVLRAAATGSVIRAFSQVFASDKLSIAQKIAFEFKQFRITGYLSPPSSTACHWSKEFQMVYVNRRCVRR------LDFLQKTINAAFAPCLGLLAGRGGSDGQRVIRRVRDPNASSGQRQELFPVFVLNLECPRGEVDIMADPDKTLVEFCDW 221
            GTTVTV + F+++PVRRK+M+   E  +++ ++  ++L++ S+S ++ +     ++L+   T  +   F Q++   K    ++I +++K+F   GY+S    +  H++K  Q ++VNRR V R      +DFL +  +    P       + GS  +++    R  +AS     EL  ++V+N++CP  E D+  +P KTL+EF +W
Sbjct:  143 GTTVTVYNLFYQFPVRRKSMDPRLEFEKVRQRVEALSLMHPSISFSLRNDVSGSMILQLPKTKDICSRFCQIYGLGKSQKLREIHYKYKEFEFNGYIS----SEAHYNKNMQFLFVNRRLVLRTKLHKLIDFLLRKESIICRP-------KNGSASRQMNSSPRHRSAS-----ELHGIYVINVQCPFCEYDVCIEPAKTLIEFQNW 333

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BLAST of mRNA_H-elongata_contig60536.13598.1 vs. uniprot
Match: A0A6P3QRE8_PTEVA (DNA mismatch repair protein Mlh3 isoform X1 n=6 Tax=Pteropus TaxID=9401 RepID=A0A6P3QRE8_PTEVA)

HSP 1 Score: 103 bits (256), Expect = 1.550e-21
Identity = 62/207 (29.95%), Postives = 113/207 (54.59%), Query Frame = 0

Query:   21 GTTVTVRDAFFKWPVRRKAMNQAAEMLRIKDQIARMALVNNSVSITVVDSAKSKLVLRAAATGSVIRAFSQVFASDKLSIAQKIAFEFKQFRITGYLSPPSSTACHWSKEFQMVYVNRRCVRR------LDFLQKTINAAFAPCLGLLAGRGGSDGQRVIRRVRDPNASSGQRQELFPVFVLNLECPRGEVDIMADPDKTLVEFCDW 221
            GTTVTV + F+++PVRRK M+   E  +++ +I  ++L++ S+S ++ +     +VL+   T  V   F Q++   K    ++I F++K+F ++GY+S    +  H++K  Q ++VN+R V +      +DFL +  +    P  G  +G+  S       R+R          EL  ++V+N++C   E D+  +P KTL+EF +W
Sbjct:  143 GTTVTVYNLFYQFPVRRKCMDPRLEFEKVRQRIDALSLMHPSISFSLRNDVSGSMVLQLPKTKDVCSRFCQIYGLSKSQKLREINFKYKKFELSGYIS----SEAHYNKNMQFLFVNKRLVLKTKLHKLIDFLLRKESIICKPKNGSASGQMNSS-----PRLRS-------NPELHGIYVINIQCQFCEYDVCMEPAKTLIEFQNW 333

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig60536.13598.1 vs. uniprot

BLAST of mRNA_H-elongata_contig60536.13598.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G9D8_ECTSI	2.320e-80	59.11	MutL protein homolog 3 n=1 Tax=Ectocarpus siliculo...	[more]
A0A6H5JWV7_9PHAE	7.200e-66	48.18	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
UPI0010A01F08	8.510e-24	31.40	DNA mismatch repair protein Mlh3 isoform X1 n=5 Ta...	[more]
Q8R407_MOUSE	1.030e-23	29.95	MutL-like protein 3 (Fragment) n=1 Tax=Mus musculu...	[more]
UPI001114CCDB	1.540e-23	30.43	DNA mismatch repair protein Mlh3 isoform X3 n=2 Ta...	[more]
Q68FG1_MOUSE	1.570e-23	30.43	MutL homolog 3 n=12 Tax=Mus TaxID=10088 RepID=Q68F...	[more]
UPI00201ED574	4.030e-23	32.18	DNA mismatch repair protein Mlh3-like n=1 Tax=Hali...	[more]
UPI001EE5DAFC	5.480e-23	32.67	uncharacterized protein LOC124264450 n=1 Tax=Halio...	[more]
D4ADG4_RAT	7.260e-23	29.47	MutL homolog 3 n=10 Tax=Tetrapoda TaxID=32523 RepI...	[more]
A0A6P3QRE8_PTEVA	1.550e-21	29.95	DNA mismatch repair protein Mlh3 isoform X1 n=6 Ta...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013507	DNA mismatch repair protein, S5 domain 2-like	SMART	SM01340	DNA_mis_repair_2	coord: 89..224 e-value: 1.1E-7 score: 41.5
IPR013507	DNA mismatch repair protein, S5 domain 2-like	PFAM	PF01119	DNA_mis_repair	coord: 92..156 e-value: 8.0E-5 score: 22.3
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	3.30.230.10		coord: 90..223 e-value: 2.9E-11 score: 45.0
IPR036890	Histidine kinase/HSP90-like ATPase superfamily	GENE3D	3.30.565.10		coord: 3..89 e-value: 1.1E-11 score: 46.6
IPR036890	Histidine kinase/HSP90-like ATPase superfamily	SUPERFAMILY	55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	coord: 14..77
IPR038973	DNA mismatch repair protein MutL/Mlh/Pms	PANTHER	PTHR10073	DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL	coord: 17..223
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 72..222

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig60536	contig	H-elongata_contig60536:29..3340 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig60536.13598.1	mRNA_H-elongata_contig60536.13598.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig60536 29..3340 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig60536.13598.1 ID=prot_H-elongata_contig60536.13598.1|Name=mRNA_H-elongata_contig60536.13598.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=233bp
QVIREGQTLHFGPANAPLRTGTTVTVRDAFFKWPVRRKAMNQAAEMLRIK
DQIARMALVNNSVSITVVDSAKSKLVLRAAATGSVIRAFSQVFASDKLSI
AQKIAFEFKQFRITGYLSPPSSTACHWSKEFQMVYVNRRCVRRLDFLQKT
INAAFAPCLGLLAGRGGSDGQRVIRRVRDPNASSGQRQELFPVFVLNLEC
PRGEVDIMADPDKTLVEFCDWPSAKNAPVALLL

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013507	DNA_mismatch_S5_2-like
IPR014721	Ribosomal_S5_D2-typ_fold_subgr
IPR036890	HATPase_C_sf
IPR038973	MutL/Mlh/Pms
IPR020568	Ribosomal_S5_D2-typ_fold