mRNA_H-elongata_contig60536.13598.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60536.13598.1
Unique NamemRNA_H-elongata_contig60536.13598.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig60536.13598.1 vs. uniprot
Match: D7G9D8_ECTSI (MutL protein homolog 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9D8_ECTSI)

HSP 1 Score: 272 bits (695), Expect = 2.320e-80
Identity = 146/247 (59.11%), Postives = 179/247 (72.47%), Query Frame = 1
Query:    1 QVIREGQTLHFGPANAPLRTGTTVTVRDAFFKWPVRRKAMNQAAEMLRIKDQIARMALVNNSVSITVVDSAKSKLVLRAAATGSVIRAFSQVFASDKLSIAQKIAFEF--------------KQFRITGYLSPPSSTACHWSKEFQMVYVNRRCVRRLDFLQKTINAAFAPCLGLLAGRGGSDGQRVIRRVRDPNASSGQRQELFPVFVLNLECPRGEVDIMADPDKTLVEFCDWPSAKNAPVALLL 699
            +V+REG+ LHFGP+ AP+R GT VT+RDAFFKWPVRRKA N+  EM RIKD ++RMALVNNSV+ITV DSAKSK+V+RA ATGS  R F+QVF+SDKLS+A+K+                    F I    S     A  +S  +    +  RCV  +  L   +NAAFAPC+ LLAGRGG+DGQ V+RRVR+PNASSGQRQELFPVFVLNLECPR EVDIM+DP+KT VEF DW +A+NA +++LL
Sbjct:  135 KVVREGEVLHFGPSRAPVRAGTIVTLRDAFFKWPVRRKAANEVTEMTRIKDCVSRMALVNNSVAITVRDSAKSKVVVRATATGSATRTFAQVFSSDKLSLARKVQIPVCVTSSAVHPLWRIHLPFCICSIGSSSGMVAFPFSTRYDTSQL--RCVPFMVLLL-AVNAAFAPCMALLAGRGGADGQGVVRRVRNPNASSGQRQELFPVFVLNLECPRSEVDIMSDPEKTWVEFSDWAAARNACISMLL 378          
BLAST of mRNA_H-elongata_contig60536.13598.1 vs. uniprot
Match: A0A6H5JWV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWV7_9PHAE)

HSP 1 Score: 230 bits (587), Expect = 7.200e-66
Identity = 132/274 (48.18%), Postives = 155/274 (56.57%), Query Frame = 1
Query:    1 QVIREGQTLHFGPANAPLRTGTTVTVRDAFFKWPVRRKAMNQAAEMLRIKDQIARMALVNNSVSITVVDSAKSKLVLRAAATGSVIRAFSQVFASDKLSIAQKI-----------------------------------------AFEFKQFRITGYLSPPSSTACHWSKEFQMVYVNRRCVRRLDFLQKTINAAFAPCLGLLAGRGGSDGQRVIRRVRDPNASSGQRQELFPVFVLNLECPRGEVDIMADPDKTLVEFCDWPSAKNAPVALLL 699
            +V+REG+ LHFGP+ AP R GT VT+RDAFFKWPVRRKA N+  EM RIKD ++RMALVNNSV+ITV DSAKSK V+RA ATGS  R F+QVF+SDKLS+A+K+                                         AF FKQFRITGYLSPPSSTACHWSKEFQ                                                        ELFPVFVLNLECPR EVDIM+DP+KT +EF DW +A+NA +++LL
Sbjct:   86 KVVREGEVLHFGPSRAPARAGTIVTLRDAFFKWPVRRKAANEVTEMTRIKDCVSRMALVNNSVAITVQDSAKSKEVVRATATGSATRTFAQVFSSDKLSLARKVEFSVCVTSKAANPRWWIHLPFCICSIGSRSGMVGFSIFHALAFNFKQFRITGYLSPPSSTACHWSKEFQ--------------------------------------------------------ELFPVFVLNLECPRSEVDIMSDPEKTWIEFSDWAAARNACISMLL 303          
BLAST of mRNA_H-elongata_contig60536.13598.1 vs. uniprot
Match: UPI0010A01F08 (DNA mismatch repair protein Mlh3 isoform X1 n=5 Tax=Murinae TaxID=39107 RepID=UPI0010A01F08)

HSP 1 Score: 109 bits (273), Expect = 8.510e-24
Identity = 65/207 (31.40%), Postives = 116/207 (56.04%), Query Frame = 1
Query:   61 GTTVTVRDAFFKWPVRRKAMNQAAEMLRIKDQIARMALVNNSVSITVVDSAKSKLVLRAAATGSVIRAFSQVFASDKLSIAQKIAFEFKQFRITGYLSPPSSTACHWSKEFQMVYVNRRCVRR------LDFLQKTINAAFAPCLGLLAGRGGSDGQRVIRRVRDPNASSGQRQELFPVFVLNLECPRGEVDIMADPDKTLVEFCDW 663
            GTTVTV + F+++PVRRK+M+   E  +++ ++  ++L++ SVS ++ + A   +VL+   T  +   F Q++   K    ++I F++K+F  +GY+S       H++K  Q ++VNRR V R      +DFL +  +    P       + GS  +++    R  +AS     EL  ++V+N++CP  E D+  +P KTL+EF +W
Sbjct:  143 GTTVTVYNLFYQFPVRRKSMDPRLEFEKVRQRVEAVSLMHPSVSFSLRNDASGSMVLQLPKTKDICSRFCQIYGLGKSQKLREIHFKYKEFEFSGYISSEG----HYNKNMQFLFVNRRLVLRTKLHKLIDFLLRKESIICRP-------KNGSASRQMNSSPRHRSAS-----ELHGIYVINVQCPFCEYDVCIEPAKTLIEFQNW 333          
BLAST of mRNA_H-elongata_contig60536.13598.1 vs. uniprot
Match: Q8R407_MOUSE (MutL-like protein 3 (Fragment) n=1 Tax=Mus musculus TaxID=10090 RepID=Q8R407_MOUSE)

HSP 1 Score: 106 bits (265), Expect = 1.030e-23
Identity = 62/207 (29.95%), Postives = 114/207 (55.07%), Query Frame = 1
Query:   61 GTTVTVRDAFFKWPVRRKAMNQAAEMLRIKDQIARMALVNNSVSITVVDSAKSKLVLRAAATGSVIRAFSQVFASDKLSIAQKIAFEFKQFRITGYLSPPSSTACHWSKEFQMVYVNRRCVRR------LDFLQKTINAAFAPCLGLLAGRGGSDGQRVIRRVRDPNASSGQRQELFPVFVLNLECPRGEVDIMADPDKTLVEFCDW 663
            GTTVTV + F+++PVRRK+M+   E  +++ ++  ++L++ S+S ++ +     +VL+   T  +   F Q++   K    ++I F++K+F  +GY+S    +  H++K  Q ++VNRR V R      +DFL +  +    P       + GS  +++    R  +AS     EL  ++V+N++CP  E D+  +P KTL+E   W
Sbjct:  143 GTTVTVYNLFYQFPVRRKSMDPRLEFEKVRQRVEALSLMHPSISFSLRNDVSGSMVLQLPKTKDICSRFCQIYGLGKSQKLREIRFKYKEFEFSGYIS----SEAHYNKNMQFLFVNRRLVLRTKLHKLIDFLLRKESIICRP-------KNGSASRQMNSSPRHRSAS-----ELHGIYVINVQCPFCEYDVCIEPAKTLIELQSW 333          
BLAST of mRNA_H-elongata_contig60536.13598.1 vs. uniprot
Match: UPI001114CCDB (DNA mismatch repair protein Mlh3 isoform X3 n=2 Tax=Mus pahari TaxID=10093 RepID=UPI001114CCDB)

HSP 1 Score: 108 bits (271), Expect = 1.540e-23
Identity = 63/207 (30.43%), Postives = 116/207 (56.04%), Query Frame = 1
Query:   61 GTTVTVRDAFFKWPVRRKAMNQAAEMLRIKDQIARMALVNNSVSITVVDSAKSKLVLRAAATGSVIRAFSQVFASDKLSIAQKIAFEFKQFRITGYLSPPSSTACHWSKEFQMVYVNRRCVRR------LDFLQKTINAAFAPCLGLLAGRGGSDGQRVIRRVRDPNASSGQRQELFPVFVLNLECPRGEVDIMADPDKTLVEFCDW 663
            GTTVTV + F+++PVRRK+M+   E  +++ ++  ++L++ S+S ++ +     +VL+   T  +   F Q++   K    ++I F++K+F  +GY+S    +  H++K  Q ++VNRR V R      +DFL +  +    P       + GS  +++    R  +AS     EL  ++V+N++CP  E D+  +P KTL+EF +W
Sbjct:  143 GTTVTVYNLFYQFPVRRKSMDPRLEFEKVRQRVEALSLMHPSISFSLRNDVSGSMVLQLPKTKDICSRFCQIYGLGKSQKLREIHFKYKEFEFSGYIS----SEAHYNKNMQFLFVNRRLVLRTKLHKLIDFLLRKESIICRP-------KNGSASRQMNSSPRHRSAS-----ELHGIYVINVQCPFCEYDVCIEPAKTLIEFQNW 333          
BLAST of mRNA_H-elongata_contig60536.13598.1 vs. uniprot
Match: Q68FG1_MOUSE (MutL homolog 3 n=12 Tax=Mus TaxID=10088 RepID=Q68FG1_MOUSE)

HSP 1 Score: 108 bits (271), Expect = 1.570e-23
Identity = 63/207 (30.43%), Postives = 115/207 (55.56%), Query Frame = 1
Query:   61 GTTVTVRDAFFKWPVRRKAMNQAAEMLRIKDQIARMALVNNSVSITVVDSAKSKLVLRAAATGSVIRAFSQVFASDKLSIAQKIAFEFKQFRITGYLSPPSSTACHWSKEFQMVYVNRRCVRR------LDFLQKTINAAFAPCLGLLAGRGGSDGQRVIRRVRDPNASSGQRQELFPVFVLNLECPRGEVDIMADPDKTLVEFCDW 663
            GTTVTV + F+++PVRRK+M+   E  +++ ++  ++L++ S+S ++ +     +VL+   T  +   F Q++   K    ++I F++K+F  +GY+S    +  H++K  Q ++VNRR V R      +DFL +  +    P       + GS  +++    R  +AS     EL  ++V+N++CP  E D+  +P KTL+EF  W
Sbjct:  143 GTTVTVYNLFYQFPVRRKSMDPRLEFEKVRQRVEALSLMHPSISFSLRNDVSGSMVLQLPKTKDICSRFCQIYGLGKSQKLREIRFKYKEFEFSGYIS----SEAHYNKNMQFLFVNRRLVLRTKLHKLIDFLLRKESIICRP-------KNGSASRQMNSSPRHRSAS-----ELHGIYVINVQCPFCEYDVCIEPAKTLIEFQSW 333          
BLAST of mRNA_H-elongata_contig60536.13598.1 vs. uniprot
Match: UPI00201ED574 (DNA mismatch repair protein Mlh3-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201ED574)

HSP 1 Score: 107 bits (268), Expect = 4.030e-23
Identity = 65/202 (32.18%), Postives = 108/202 (53.47%), Query Frame = 1
Query:   61 GTTVTVRDAFFKWPVRRKAMNQAAEMLRIKDQIARMALVNNSVSITVVDSAKSKLVLRAAATGSVIRAFSQVFASDKLSIAQKIAFEFKQFRITGYLSPPSSTACHWSKEFQMVYVNRRCVRRLDFLQKTINAAFAPCLGLLAGRGGSDGQRVIRRVRDPNASSGQRQ-ELFPVFVLNLECPRGEVDIMADPDKTLVEFCDW 663
            GTTVT  D F+  PVR+K MN+A E+ RI+ ++  +AL++ SVS ++ +     ++L+   + S+++AF  +F + K    ++++ +   F + G++        H SK  Q VYVN R V +   + K +N      L L      ++      +   P  SS  +Q + + +FV+N++CP    DI  DP KTLVEF DW
Sbjct:  143 GTTVTAHDLFYSLPVRKKNMNEALELERIRYRVEGIALIHPSVSFSLRNDITGNILLQTQKSSSMLKAFMHLFGTGKSKCLREVSLQKDCFDVEGFIGKEG----HSSKSLQFVYVNGRLVLKTK-VHKILNHVLRRSLVLKRKGSNNEDSSGTTQTAGPQTSSPLKQGDKYAMFVINVKCPLDAYDITFDPAKTLVEFKDW 339          
BLAST of mRNA_H-elongata_contig60536.13598.1 vs. uniprot
Match: UPI001EE5DAFC (uncharacterized protein LOC124264450 n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE5DAFC)

HSP 1 Score: 107 bits (267), Expect = 5.480e-23
Identity = 66/202 (32.67%), Postives = 109/202 (53.96%), Query Frame = 1
Query:   61 GTTVTVRDAFFKWPVRRKAMNQAAEMLRIKDQIARMALVNNSVSITVVDSAKSKLVLRAAATGSVIRAFSQVFASDKLSIAQKIAFEFKQFRITGYLSPPSSTACHWSKEFQMVYVNRRCVRRLDFLQKTINAAFAPCLGLLAGRGGSDGQRVIRRVRDPNASSGQRQ-ELFPVFVLNLECPRGEVDIMADPDKTLVEFCDW 663
            GTTVT  D F+  PVR+K MN+A E+ RI+ ++  +AL++ SVS ++ +     ++L+   + SV+ AF  +F + K    ++++ +   F++ G++        H SK  Q VYVN R V +   + K +N      L L       +G     ++    +SS  +Q + + +FV+N++CP    DI  DP KTLVEF DW
Sbjct:  143 GTTVTAHDLFYSLPVRKKNMNEALELERIRYRVEGIALIHPSVSFSLRNDINGNILLQTQKSSSVLTAFMHLFGTGKSKCLREVSLQEGCFQVEGFIGKEG----HCSKSLQFVYVNGRLVLKTK-VHKILNHTLGRSLVLKRKGSNFEGSMGGSQLAGAPSSSPPKQGDKYAMFVINVKCPLDAYDITFDPAKTLVEFKDW 339          
BLAST of mRNA_H-elongata_contig60536.13598.1 vs. uniprot
Match: D4ADG4_RAT (MutL homolog 3 n=10 Tax=Tetrapoda TaxID=32523 RepID=D4ADG4_RAT)

HSP 1 Score: 107 bits (266), Expect = 7.260e-23
Identity = 61/207 (29.47%), Postives = 115/207 (55.56%), Query Frame = 1
Query:   61 GTTVTVRDAFFKWPVRRKAMNQAAEMLRIKDQIARMALVNNSVSITVVDSAKSKLVLRAAATGSVIRAFSQVFASDKLSIAQKIAFEFKQFRITGYLSPPSSTACHWSKEFQMVYVNRRCVRR------LDFLQKTINAAFAPCLGLLAGRGGSDGQRVIRRVRDPNASSGQRQELFPVFVLNLECPRGEVDIMADPDKTLVEFCDW 663
            GTTVTV + F+++PVRRK+M+   E  +++ ++  ++L++ S+S ++ +     ++L+   T  +   F Q++   K    ++I +++K+F   GY+S    +  H++K  Q ++VNRR V R      +DFL +  +    P       + GS  +++    R  +AS     EL  ++V+N++CP  E D+  +P KTL+EF +W
Sbjct:  143 GTTVTVYNLFYQFPVRRKSMDPRLEFEKVRQRVEALSLMHPSISFSLRNDVSGSMILQLPKTKDICSRFCQIYGLGKSQKLREIHYKYKEFEFNGYIS----SEAHYNKNMQFLFVNRRLVLRTKLHKLIDFLLRKESIICRP-------KNGSASRQMNSSPRHRSAS-----ELHGIYVINVQCPFCEYDVCIEPAKTLIEFQNW 333          
BLAST of mRNA_H-elongata_contig60536.13598.1 vs. uniprot
Match: A0A6P3QRE8_PTEVA (DNA mismatch repair protein Mlh3 isoform X1 n=6 Tax=Pteropus TaxID=9401 RepID=A0A6P3QRE8_PTEVA)

HSP 1 Score: 103 bits (256), Expect = 1.550e-21
Identity = 62/207 (29.95%), Postives = 113/207 (54.59%), Query Frame = 1
Query:   61 GTTVTVRDAFFKWPVRRKAMNQAAEMLRIKDQIARMALVNNSVSITVVDSAKSKLVLRAAATGSVIRAFSQVFASDKLSIAQKIAFEFKQFRITGYLSPPSSTACHWSKEFQMVYVNRRCVRR------LDFLQKTINAAFAPCLGLLAGRGGSDGQRVIRRVRDPNASSGQRQELFPVFVLNLECPRGEVDIMADPDKTLVEFCDW 663
            GTTVTV + F+++PVRRK M+   E  +++ +I  ++L++ S+S ++ +     +VL+   T  V   F Q++   K    ++I F++K+F ++GY+S    +  H++K  Q ++VN+R V +      +DFL +  +    P  G  +G+  S       R+R          EL  ++V+N++C   E D+  +P KTL+EF +W
Sbjct:  143 GTTVTVYNLFYQFPVRRKCMDPRLEFEKVRQRIDALSLMHPSISFSLRNDVSGSMVLQLPKTKDVCSRFCQIYGLSKSQKLREINFKYKKFELSGYIS----SEAHYNKNMQFLFVNKRLVLKTKLHKLIDFLLRKESIICKPKNGSASGQMNSS-----PRLRS-------NPELHGIYVINIQCQFCEYDVCMEPAKTLIEFQNW 333          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60536.13598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9D8_ECTSI2.320e-8059.11MutL protein homolog 3 n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JWV7_9PHAE7.200e-6648.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0010A01F088.510e-2431.40DNA mismatch repair protein Mlh3 isoform X1 n=5 Ta... [more]
Q8R407_MOUSE1.030e-2329.95MutL-like protein 3 (Fragment) n=1 Tax=Mus musculu... [more]
UPI001114CCDB1.540e-2330.43DNA mismatch repair protein Mlh3 isoform X3 n=2 Ta... [more]
Q68FG1_MOUSE1.570e-2330.43MutL homolog 3 n=12 Tax=Mus TaxID=10088 RepID=Q68F... [more]
UPI00201ED5744.030e-2332.18DNA mismatch repair protein Mlh3-like n=1 Tax=Hali... [more]
UPI001EE5DAFC5.480e-2332.67uncharacterized protein LOC124264450 n=1 Tax=Halio... [more]
D4ADG4_RAT7.260e-2329.47MutL homolog 3 n=10 Tax=Tetrapoda TaxID=32523 RepI... [more]
A0A6P3QRE8_PTEVA1.550e-2129.95DNA mismatch repair protein Mlh3 isoform X1 n=6 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60536contigH-elongata_contig60536:29..3340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score271.9
Seed ortholog evalue2.7e-70
Seed eggNOG ortholog2880.D7G9D8
Preferred nameMLH3
KEGG koko:K08739
KEGG Pathwayko03430,map03430
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000793,GO:0000794,GO:0000795,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003696,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005712,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0031974,GO:0031981,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0035825,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0048285,GO:0050896,GO:0051321,GO:0051716,GO:0061982,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0099086,GO:0140013,GO:1901360,GO:1901363,GO:1903046,GO:1990391,GO:1990837
EggNOG free text desc.mismatched DNA binding
EggNOG OGsCOG0323@1,KOG1977@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMutL protein homolog 3
Ec32 orthologEc-28_000540.1
Exons6
Model size699
Cds size699
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60536.13598.1prot_H-elongata_contig60536.13598.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60536 29..3340 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930979.867795-CDS-H-elongata_contig60536:28..1631622930979.867795-CDS-H-elongata_contig60536:28..163Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60536 29..163 -
1691679649.0705347-CDS-H-elongata_contig60536:28..1631691679649.0705347-CDS-H-elongata_contig60536:28..163Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60536 29..163 -
1622930979.8856347-CDS-H-elongata_contig60536:658..8261622930979.8856347-CDS-H-elongata_contig60536:658..826Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60536 659..826 -
1691679649.082487-CDS-H-elongata_contig60536:658..8261691679649.082487-CDS-H-elongata_contig60536:658..826Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60536 659..826 -
1622930979.9030485-CDS-H-elongata_contig60536:1119..12061622930979.9030485-CDS-H-elongata_contig60536:1119..1206Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60536 1120..1206 -
1691679649.0915527-CDS-H-elongata_contig60536:1119..12061691679649.0915527-CDS-H-elongata_contig60536:1119..1206Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60536 1120..1206 -
1622930979.9218872-CDS-H-elongata_contig60536:2325..24231622930979.9218872-CDS-H-elongata_contig60536:2325..2423Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60536 2326..2423 -
1691679649.102792-CDS-H-elongata_contig60536:2325..24231691679649.102792-CDS-H-elongata_contig60536:2325..2423Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60536 2326..2423 -
1622930979.9417772-CDS-H-elongata_contig60536:2770..28551622930979.9417772-CDS-H-elongata_contig60536:2770..2855Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60536 2771..2855 -
1691679649.1115923-CDS-H-elongata_contig60536:2770..28551691679649.1115923-CDS-H-elongata_contig60536:2770..2855Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60536 2771..2855 -
1622930979.9594095-CDS-H-elongata_contig60536:3214..33401622930979.9594095-CDS-H-elongata_contig60536:3214..3340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60536 3215..3340 -
1691679649.1227899-CDS-H-elongata_contig60536:3214..33401691679649.1227899-CDS-H-elongata_contig60536:3214..3340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60536 3215..3340 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60536.13598.1

>prot_H-elongata_contig60536.13598.1 ID=prot_H-elongata_contig60536.13598.1|Name=mRNA_H-elongata_contig60536.13598.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=233bp
QVIREGQTLHFGPANAPLRTGTTVTVRDAFFKWPVRRKAMNQAAEMLRIK
DQIARMALVNNSVSITVVDSAKSKLVLRAAATGSVIRAFSQVFASDKLSI
AQKIAFEFKQFRITGYLSPPSSTACHWSKEFQMVYVNRRCVRRLDFLQKT
INAAFAPCLGLLAGRGGSDGQRVIRRVRDPNASSGQRQELFPVFVLNLEC
PRGEVDIMADPDKTLVEFCDWPSAKNAPVALLL
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mRNA from alignment at H-elongata_contig60536:29..3340-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60536.13598.1 ID=mRNA_H-elongata_contig60536.13598.1|Name=mRNA_H-elongata_contig60536.13598.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3312bp|location=Sequence derived from alignment at H-elongata_contig60536:29..3340- (Himanthalia elongata Himel1 dioecious)
CAGGTGATCCGAGAGGGCCAAACGCTTCACTTCGGGCCGGCGAATGCCCC CTTGCGCACGGGCACGACAGTCACTGTCCGCGACGCTTTCTTCAAGTGGC CCGTCCGACGGAAGGCCATGAACCAGGTGCTGTTGCTGCCTTGGAAGGAA ACGAAGGAAACGACTAACTGGTATTATTCAAATAAATAGTCCCCAAAACT TGATGATTAGGCTGCATGAATCTCGGGGGCTTTGCTGTGAACCGTCTGTG TGCCCCCCTCGCGGGTATAGGCGAATTACAGCTTCCCCGCTCCTGGTAGA TTTCTTTGTGATTCGTAGCCAGCTCTGGGTTCGTTTGCTTGCGGCGACTG ATGCGCAAGGAATCGTACCAAGAAGTTCTGTGGCAGAGCGTGGAGTGTAT TTTCCTACTCCCGTGTCTTGAGAGCGAACCCGTTAACTTCACAGCGTGAA ACCGTCGCGTGTATTTCGCCCACTGCTGTCCACAGGCGGCGGAAATGTTG CGCATCAAGGATCAAATTGCGAGAATGGCGCTGGTGAACAACTCCGTCTC GATCACAGTCGTAGACTCCGGTAAGTGTCCGCGCAGTCTGCCCCGAGCGG AAAATTTGAGGTTCCTTTATCTCAACGCTGTCGACCTAGCCCGGAGCTAT GGTGACGTAAGAAACAAGTTATGCGCCGGTACCGATGCTCGTCTCGCCAA GCGTACAAACGCGGACGTGTCCTTGCTTCAGCGCTAATATATAAGAACGA TATGCTAGGGAGGGGGAGAAGGGGGGGGGGGAGTATCTTTGGTAGTTTGT TTTTTCCCTCGCGGGAGTCGTCGAGCGCGCCTACTCTCGCGATTCCTGCT TGCCAATAACTTGGCTACCGGGTGATTCGTGCCCCGCTCGACCCGTCTCA ATCGATCGGGACCTCAGCGAAGTCGAAGTTGGTTCTGAGGGCGGCAGCGA CTGGCAGTGTGATTCGCGCCTTCAGTCAAGTCTTCGCGTCCGACAAGCTC TCCATAGCACAGAAGGTAATGGGACAACCTCCCCATCCCCGCTCCGCGAT TCGGCGCGCATTCGTTGTCCAGTTTCTTCGCGGGTTACCTACGCTCACGC TGACGTCAGCCTCATGGCTTGATATACGACATTTTTCCGGGATTTTCTCT ATGCGAGACTCCCTCCGCGCGCAGTCACTGTTTCCGGCCCTAAGGATGAG ACAAGCCAGCTAGCTGCCTTCAAGCGGCATACTGGTTGATCGTGGTCTAT TACCCTCTCTATGGATATTTGTCTGTCTGTTTTACTAATTAGTACCGCAG AACTACGAAATTTCCCTACACACCGTACGACCTCACTTTACCCCTCTGTT TATTTTTTGCTCCTCTTTCTTCCCTATAGAAAAAAAAACTGGTTCCCCTT AGTTTGCAAACAATAATCATTCTCTCTATGCTTGGATTCCAGAAAGAACC TTAACACGTTTCTAACAACTACAGTCCGAAACTAACTGAGATATATATAT ATATATATATATATATAATACAACCATGTGATGAAAATATTTAACCCTTC CTAATCACCACACACAGTTCACTCTCTAGGTGTTATATACATGTATAATT CAACCATACGATGAATAATGCGCAATAACACCTACAACCTGAAATCAATC GAGACGTATGTACAATGTAACCATTCCTAGCAACCATAGTTCGCGTTCTA GGGCTCTCGTTTGACGTCATAGTCCCCATACGATGACGTCATCAATAATG CAAGTGTACGGGACAATGACGGGATCCCCGACATTATTAACCGCCGACCC GATGAAGTTACCACCGGGGAACACGAATAATCACATGTGACATTTTTTCT TCTTCTTCTCGTAAATGTAGTAAATTCCATATTCAAACCTTACGATAGTT GGTTCCCTGGACTGCACCGCTCATGGTGTCAAGAAGGTTGTTGGTCGGTG CAAAGGGTAGAGCTCTGGCGCTTAGTTCATCGCGGCATGGCGGGATGACG TCCGGGTTAATGTTGACACAACGGGAAAAAGAGACTCTTCCCATCTGAAC CGTTCCCTCTTTCTCGAGGTGATGCTGTAATGTGATGTTGCTGTCTTTGT GACCGTTTCTCCTTCGACTTGCCCCACCTCGCAGATTGCGTTCGAGTTTA AGCAGTTCCGGATAACAGGCTACCTCTCTCCGCCATCCTCGACCGCCTGC CACTGGTCCAAAGAATTCCAGGTGTGATCACTGGTCCCTCCGCGTGGTGG AAGTAGTGGCTCGCGATCATCTCGCTGTTGTGTGAGGCGTTTTGCTCGTG GCGCCGTCTTCTACCCCGCCTGGACAGCGCGCATTCTCGTAAGCAGGGTT GGTCAATATCAGGCCGATGTTCCGAGGACTAGCGTCACCGGAAAGCTCCA TCCACCCCCATCGCTCCCGCCTCTCTCAGCAAGAGAACGCCCGTGCGCTT CCTCACTCTTTTTTGTTTGTTTGGATACACAATGGCTTTAGTCTTCTCTT CTTCTCCGCCACAGATGGTCTACGTCAACCGGCGGTGTGTGCGGAGGTTG GACTTCCTGCAGAAGACAATCAACGCCGCGTTCGCGCCATGCCTTGGCCT TCTTGCCGGGCGCGGCGGCTCGGACGGGCAGAGGGTCATAAGGAGGGTGC GGGATCCCAACGCGTCGTCGGGGCAGCGGCAGGTCCGAGCGCTTGAATGG GGTTCAAGGGTCGGCCGAACCGCGTGTGCGCTTTGCATGCAAGGAACTTA GCGTGTCTTCCTCCTTTGCGGACACCGGGGCTGGTCCACGACATCCGTCG GCGATCGGCGTTTGTAGACCAAACAACACACTTCCGAATGTACAAAACAC GACAATCGTATTATTTTAACTTGTTGCCATATTAATCCCTCCACCCATCA TTGCTTGTGCCACGTTCCGTGGTCGGGACTATTAGCGTGGTTGGAGCGTC TTTTGGGGGTGGTCGACGAAGACTTTCTCCCGTTGTGTGTCGAGCACGCA CGACGCGTGAGGTCAAAGTTGCCCTTGGACCTGCCACGCTTCGGATACCA ATGCCGGTTAAATCAGCCGAACTTCCCCTGTTTATCTCGTTTCCACGAGA GTCGAAAAAAATACATCGCGCGTGAGATGACGCCTGCCAAACCCTGCCCC TCGCGAACGTGTGGCGCCCGCGGTCAGGAGCTGTTCCCAGTGTTTGTACT GAATTTAGAGTGCCCTCGAGGCGAGGTGGACATTATGGCCGACCCCGACA AGACCTTGGTGGAGTTCTGCGATTGGCCCTCGGCCAAGAACGCTCCTGTC GCCCTCTTGCTC
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Coding sequence (CDS) from alignment at H-elongata_contig60536:29..3340-

>mRNA_H-elongata_contig60536.13598.1 ID=mRNA_H-elongata_contig60536.13598.1|Name=mRNA_H-elongata_contig60536.13598.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1398bp|location=Sequence derived from alignment at H-elongata_contig60536:29..3340- (Himanthalia elongata Himel1 dioecious)
CAGGTGATCCGAGAGGGCCAAACGCTTCACTTCGGGCCGGCGAATGCCCC
CTTGCGCACGGGCACGACAGTCACTGTCCGCGACGCTTTCTTCAAGTGGC
CCGTCCGACGGAAGGCCATGAACCAGCAGGTGATCCGAGAGGGCCAAACG
CTTCACTTCGGGCCGGCGAATGCCCCCTTGCGCACGGGCACGACAGTCAC
TGTCCGCGACGCTTTCTTCAAGTGGCCCGTCCGACGGAAGGCCATGAACC
AGGCGGCGGAAATGTTGCGCATCAAGGATCAAATTGCGAGAATGGCGCTG
GTGAACAACTCCGTCTCGATCACAGTCGTAGACTCCGGCGGCGGAAATGT
TGCGCATCAAGGATCAAATTGCGAGAATGGCGCTGGTGAACAACTCCGTC
TCGATCACAGTCGTAGACTCCGCGAAGTCGAAGTTGGTTCTGAGGGCGGC
AGCGACTGGCAGTGTGATTCGCGCCTTCAGTCAAGTCTTCGCGTCCGACA
AGCTCTCCATAGCACAGAAGCGAAGTCGAAGTTGGTTCTGAGGGCGGCAG
CGACTGGCAGTGTGATTCGCGCCTTCAGTCAAGTCTTCGCGTCCGACAAG
CTCTCCATAGCACAGAAGATTGCGTTCGAGTTTAAGCAGTTCCGGATAAC
AGGCTACCTCTCTCCGCCATCCTCGACCGCCTGCCACTGGTCCAAAGAAT
TCCAGATTGCGTTCGAGTTTAAGCAGTTCCGGATAACAGGCTACCTCTCT
CCGCCATCCTCGACCGCCTGCCACTGGTCCAAAGAATTCCAGATGGTCTA
CGTCAACCGGCGGTGTGTGCGGAGGTTGGACTTCCTGCAGAAGACAATCA
ACGCCGCGTTCGCGCCATGCCTTGGCCTTCTTGCCGGGCGCGGCGGCTCG
GACGGGCAGAGGGTCATAAGGAGGGTGCGGGATCCCAACGCGTCGTCGGG
GCAGCGGCAGATGGTCTACGTCAACCGGCGGTGTGTGCGGAGGTTGGACT
TCCTGCAGAAGACAATCAACGCCGCGTTCGCGCCATGCCTTGGCCTTCTT
GCCGGGCGCGGCGGCTCGGACGGGCAGAGGGTCATAAGGAGGGTGCGGGA
TCCCAACGCGTCGTCGGGGCAGCGGCAGGAGCTGTTCCCAGTGTTTGTAC
TGAATTTAGAGTGCCCTCGAGGCGAGGTGGACATTATGGCCGACCCCGAC
AAGACCTTGGTGGAGTTCTGCGATTGGCCCTCGGCCAAGAACGCTCCTGT
CGCCCTCTTGCTCGAGCTGTTCCCAGTGTTTGTACTGAATTTAGAGTGCC
CTCGAGGCGAGGTGGACATTATGGCCGACCCCGACAAGACCTTGGTGGAG
TTCTGCGATTGGCCCTCGGCCAAGAACGCTCCTGTCGCCCTCTTGCTC
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