prot_H-elongata_contig59642.13481.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig59642.13481.1
Unique Nameprot_H-elongata_contig59642.13481.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length359
Homology
BLAST of mRNA_H-elongata_contig59642.13481.1 vs. uniprot
Match: A0A6H5KJG2_9PHAE (Tub domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJG2_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 9.660e-53
Identity = 200/409 (48.90%), Postives = 237/409 (57.95%), Query Frame = 0
Query:    1 VNVSTQEETDDAFLFHPTPRGVKSYCIIQRTSSTIRTYFRLFLQEHRPLGDP----------APPPPTSTTGLSAGSTXXXXXXXXXPXXXXXXXXXXXXXXXXXXXPS---------GGMETIRAFL--GGGXXXXXXXXXXXXXXXXXGATAGVGKFLLSSKRYRSARVRSATYIWGKNGVWKDKQALARVSTLPWGG-GKGVGTVSSPFLLGNRARPIASPAPSGSGAV------GSTAAASPPSGLAFDGSTLD-------------DDGSDG-KAQSPALSGSSGGGXXXXXXXXXXXXXRQGSRSKGLEGGGSPTCWAVVVNVQAEGEARLLSVTAIVPDPGAIMAGFGATSGSGGGS-------DQSLETAL-AEGLRSRERSGVSPQGTIILSSRQPQWSA 359
            V+VS+ +E DD FL  PTP+G+KSYCIIQRT STIRTYFRLFLQE RPL +           A P  T+T+G + G  XXXXXXXXX XXXXXXXXXXXXX       S         GGMET+RAFL  GGG   XXXXXXXXXX        G  +FLLSSKRYRS R RSA+Y+W +NGVWKDK ALA+V+T PWGG GKG GT++SP L+G+  R   +                S  A       + DG                 D GSDG KAQSPALSGSS          XXXXXX         +GG       +VVNVQAEGE +LLSV AIVPDP A ++  G+               +Q +++ L AEGLR  E++GV P G I+L S+QP+WSA
Sbjct:  225 VDVSSLQEADDNFLLQPTPQGLKSYCIIQRTRSTIRTYFRLFLQEQRPLAEDGSGGDXXXXNASPTTTTTSGPATGVPXXXXXXXXXXXXXXXXXXXXXXXAFSATGGSASGGVTHSGGGMETLRAFLAVGGGGGSXXXXXXXXXX------AVGGAQFLLSSKRYRSTRPRSASYVWSRNGVWKDKHALAKVATQPWGGKGKGEGTMTSPSLVGDHLRAATAAXXXXXXXXXXXXXFSSVPAXXXXXXXSADGGXXXXXXXXXXISGSPGDVGSDGSKAQSPALSGSS----------XXXXXXXXXXXXXXXQGG-------LVVNVQAEGEGKLLSVAAIVPDPSASLSAPGSAXXXXXXXXXXXXXXEQMVDSGLLAEGLRKWEKAGVVPPGMIVLRSKQPKWSA 610          
BLAST of mRNA_H-elongata_contig59642.13481.1 vs. uniprot
Match: D8LGZ8_ECTSI (Tub domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGZ8_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 1.500e-48
Identity = 194/389 (49.87%), Postives = 230/389 (59.13%), Query Frame = 0
Query:    1 VNVSTQEETDDAFLFHPTPRGVKSYCIIQRTSSTIRTYFRLFLQEHRPLGDPAP-----------------PPPTSTTGLSAGSTXXXXXXXXXPXXXXXXXXXXXXXXXXXXXPSGGMETIRAFLGGGXXXXXXXXXXXXXXXXXGATAGVGKFLLSSKRYRSARVRSATYIWGKNGVWKDKQALARVSTLPWGG-GKGVGTVSSPFLLGNRARPI-------ASPAPSGSGAVGSTAAASPPSGLAFDGSTLDDDGSDGKAQSPAL--SGSSGGGXXXXXXXXXXXXXRQGSRSKGLEGGGSPTCWAVVVNVQAEGEARLLSVTAIVPDPGAIMAGFGATSGSGGGS--DQSLETAL-AEGLRSRERSGVSPQGTIILSSRQPQWSA 359
            V+VS+ +E DD FL  PTP+G+KSYCIIQRT STIRTYFRLFLQE RPL +                                  XXXXXXXXX XXXXXXXXXXXXXXXXXXX        RA     XXXXXXXXXXXXXXXXXGA  G  +FLLSSKRYRS + RSA+Y+W +NGVWKDK ALA+V+T PWGG GKG GT++SP L+G+  R         ASP P G+   G TAA                     KA+   +  +GS GG                  R +G+  GGSP CWAVVVNVQAEGE +LLSV AIVPDP A ++  G+          +Q +++ L AEGLR  E++GV P G I+L S+QP+WSA
Sbjct:  155 VDVSSLQEADDNFLLQPTPQGLKSYCIIQRTRSTIRTYFRLFLQEQRPLAEDGSGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAXXXX-XXXXXXXXXXXXXXXXXGAVGGA-QFLLSSKRYRSTKPRSASYVWSRNGVWKDKHALAKVATQPWGGKGKGEGTMTSPSLVGDHLRAATAAXXXXASPGPRGT--WGRTAARL-------------------KARRCLVRAAGSVGGRRGGGAEEAQVGRGAGVRRPEGV--GGSPACWAVVVNVQAEGEGKLLSVAAIVPDPSASLSAPGSAXXXXXXXXXEQMVDSGLLAEGLRKWEKTGVVPPGMIVLRSKQPKWSA 518          
BLAST of mRNA_H-elongata_contig59642.13481.1 vs. uniprot
Match: A0A835YQA2_9STRA (Tub domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQA2_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.840e-5
Identity = 75/352 (21.31%), Postives = 119/352 (33.81%), Query Frame = 0
Query:    8 ETDDAFLFHPTPRGVKSYCIIQRTSSTIRTYFRLFLQEHRPLGDPAPPPPTSTTGLSAGSTXXXXXXXXXPXXXXXXXXXXXXXXXXXXXPSGGMETIRAFLGGGXXXXXXXXXXXXXXXXXGATAGVGKFLLSSKRYRSARVRSATYIWGKNGVWKDKQALARVSTLPWGGGKGVGTVSSPFLLGNRARPIASPAPSGSGAVGSTAAASPPSGLAFDGSTLDDDGSDGKAQSPALSGSSGGGXXXXXXXXXXXXXRQGSRSKGLEGGGSPTCWAVVVNVQAEGEARLLSVTAIVPDPGAIMAGFGATSGSGGGSDQSLETALAEGLRSRERSGVSPQGTIILSSRQPQWSA 359
            E+D  FL     +  ++  I+QR+ S +R Y+ + LQE   L  P PPP  +    +A +                              P   +  + A                             +FLLS++R R  +  + +++W  +GVWKDKQA+A+V+  P G     G      LL  +   +A     GS  +GS                                                                     A+ VNV  +  +RLLS+TA++PDP            S   +D   E +L   L+    +G  P G ++L S++P+WSA
Sbjct:  169 ESDSGFLLQAAHKTTRTCTIVQRSRSRLRCYYNMALQEQIAL--PTPPPCDNMCINAAAAVSVKFRVCAHLPSPPPAGSHSGPGSETSTPPMSDLSAVGA--------KRPSLLALRLGPQKDPLMENTRFLLSTRRGRGGKPMAVSHMWNTSGVWKDKQAMAKVTVQP-GPAAAAGATHVSRLLSEKRAAVA-----GSALIGS---------------------------------------------------------------------AIAVNVVTDASSRLLSITAVIPDP--------QDEPSPASTD---EASLLAVLQLATAAGAPPPGFLLLQSKKPRWSA 424          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59642.13481.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KJG2_9PHAE9.660e-5348.90Tub domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LGZ8_ECTSI1.500e-4849.87Tub domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YQA2_9STRA3.840e-521.31Tub domain-containing protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59642contigH-elongata_contig59642:3..3191 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59642.13481.1mRNA_H-elongata_contig59642.13481.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig59642 3..3191 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig59642.13481.1 ID=prot_H-elongata_contig59642.13481.1|Name=mRNA_H-elongata_contig59642.13481.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=359bp
VNVSTQEETDDAFLFHPTPRGVKSYCIIQRTSSTIRTYFRLFLQEHRPLG
DPAPPPPTSTTGLSAGSTAATASGNTVPVTGGSSSTGAGSGGGSGSGPSG
GMETIRAFLGGGGGTAAATAVAGGGSGEGGATAGVGKFLLSSKRYRSARV
RSATYIWGKNGVWKDKQALARVSTLPWGGGKGVGTVSSPFLLGNRARPIA
SPAPSGSGAVGSTAAASPPSGLAFDGSTLDDDGSDGKAQSPALSGSSGGG
GNSVGGGNSNSGSRQGSRSKGLEGGGSPTCWAVVVNVQAEGEARLLSVTA
IVPDPGAIMAGFGATSGSGGGSDQSLETALAEGLRSRERSGVSPQGTIIL
SSRQPQWSA
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