prot_H-elongata_contig5717.13172.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5717.13172.1
Unique Nameprot_H-elongata_contig5717.13172.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length78
Homology
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BLAST of mRNA_H-elongata_contig5717.13172.1 vs. uniprot
Match: D7FV42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV42_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 3.460e-8
Identity = 37/79 (46.84%), Postives = 43/79 (54.43%), Query Frame = 0 
Query:    1 MSIRLKLPRV-SDLGSSEFGRVRKKTLKAEEADGLIAGTSDARRFLIRAGDGETVDKRKQSTAADGGRERWPIISSVPA 78
            ++IRLKLPR  SDLG+SEFGRVRKKTLKAEEA G                             A G  ERWP++S+ PA
Sbjct: 1552 LTIRLKLPRSGSDLGASEFGRVRKKTLKAEEAGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-GPAERWPVVSTAPA 1629
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BLAST of mRNA_H-elongata_contig5717.13172.1 vs. uniprot
Match: A0A6H5LHH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHH7_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 4.630e-5
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 0 
Query:    1 MSIRLKLPRV-SDLGSSEFGRVRKKTLKAEEA 31
            ++IRLKLPR  SDLG+SEFGRVRKKTLKAEEA
Sbjct: 1958 LTIRLKLPRSGSDLGASEFGRVRKKTLKAEEA 1989
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5717.13172.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FV42_ECTSI3.460e-846.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LHH7_9PHAE4.630e-584.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5717contigH-elongata_contig5717:1928..2236 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5717.13172.1mRNA_H-elongata_contig5717.13172.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5717 1928..2245 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5717.13172.1 ID=prot_H-elongata_contig5717.13172.1|Name=mRNA_H-elongata_contig5717.13172.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
MSIRLKLPRVSDLGSSEFGRVRKKTLKAEEADGLIAGTSDARRFLIRAGD
GETVDKRKQSTAADGGRERWPIISSVPA
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