mRNA_H-elongata_contig5717.13172.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5717.13172.1
Unique NamemRNA_H-elongata_contig5717.13172.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5717.13172.1 vs. uniprot
Match: D7FV42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV42_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 4.060e-11
Identity = 40/82 (48.78%), Postives = 46/82 (56.10%), Query Frame = 1 
Query:    1 NPDMSIRLKLPRV-SDLGSSEFGRVRKKTLKAEEADGLIAGTSDARRFLIRAGDGETVDKRKQSTAADGGRERWPIISSVPA 243
            NPD++IRLKLPR  SDLG+SEFGRVRKKTLKAEEA G                             A G  ERWP++S+ PA
Sbjct: 1549 NPDLTIRLKLPRSGSDLGASEFGRVRKKTLKAEEAGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-GPAERWPVVSTAPA 1629
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BLAST of mRNA_H-elongata_contig5717.13172.1 vs. uniprot
Match: A0A6H5LHH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHH7_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 5.350e-8
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    1 NPDMSIRLKLPRV-SDLGSSEFGRVRKKTLKAEEA 102
            NPD++IRLKLPR  SDLG+SEFGRVRKKTLKAEEA
Sbjct: 1955 NPDLTIRLKLPRSGSDLGASEFGRVRKKTLKAEEA 1989
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5717.13172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FV42_ECTSI4.060e-1148.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LHH7_9PHAE5.350e-885.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5717contigH-elongata_contig5717:1928..2245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size234
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5717.13172.1prot_H-elongata_contig5717.13172.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5717 1928..2236 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930928.3528233-CDS-H-elongata_contig5717:1927..20241622930928.3528233-CDS-H-elongata_contig5717:1927..2024Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5717 1928..2024 -
1691679628.5600812-CDS-H-elongata_contig5717:1927..20241691679628.5600812-CDS-H-elongata_contig5717:1927..2024Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5717 1928..2024 -
1622930928.376295-CDS-H-elongata_contig5717:2099..22361622930928.376295-CDS-H-elongata_contig5717:2099..2236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5717 2100..2236 -
1691679628.5696452-CDS-H-elongata_contig5717:2099..22361691679628.5696452-CDS-H-elongata_contig5717:2099..2236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5717 2100..2236 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930928.3906481-UTR-H-elongata_contig5717:2236..22451622930928.3906481-UTR-H-elongata_contig5717:2236..2245Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5717 2237..2245 -
1691679628.5787039-UTR-H-elongata_contig5717:2236..22451691679628.5787039-UTR-H-elongata_contig5717:2236..2245Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5717 2237..2245 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5717.13172.1

>prot_H-elongata_contig5717.13172.1 ID=prot_H-elongata_contig5717.13172.1|Name=mRNA_H-elongata_contig5717.13172.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
MSIRLKLPRVSDLGSSEFGRVRKKTLKAEEADGLIAGTSDARRFLIRAGD
GETVDKRKQSTAADGGRERWPIISSVPA
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mRNA from alignment at H-elongata_contig5717:1928..2245-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5717.13172.1 ID=mRNA_H-elongata_contig5717.13172.1|Name=mRNA_H-elongata_contig5717.13172.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=318bp|location=Sequence derived from alignment at H-elongata_contig5717:1928..2245- (Himanthalia elongata Himel1 dioecious)
AACCCTGACATGAGCATCCGCCTAAAGCTGCCTCGCGTGAGCGACCTAGG
GTCCTCGGAGTTCGGCCGAGTCCGCAAGAAGACGCTCAAGGCGGAGGAAG
CCGATGGCCTTATAGCGGGGACAAGCGACGCCAGACGTTTCCTCATGTCT
GGTGATGCACGTAGGGGAACGTTCGATCGAAAAGGTGTCAATAGCGGCAG
CGGCCGTAGCAGTGGCCGTAGCAGGGCCGGTGACGGAGAAACCGTCGACA
AGCGGAAGCAATCGACCGCTGCAGACGGTGGGCGGGAGAGGTGGCCGATT
ATATCGTCGGTTCCGGCG
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Coding sequence (CDS) from alignment at H-elongata_contig5717:1928..2245-

>mRNA_H-elongata_contig5717.13172.1 ID=mRNA_H-elongata_contig5717.13172.1|Name=mRNA_H-elongata_contig5717.13172.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig5717:1928..2245- (Himanthalia elongata Himel1 dioecious)
ATGAGCATCCGCCTAAAGCTGCCTCGCGTGAGCGACCTAGGGTCCTCGGA
GTTCGGCCGAGTCCGCAAGAAGACGCTCAAGGCGGAGGAAGCCGATGGCC
TTATAGCGGGGACAAGCGACGCCAGACGTTTCCTCATATGAGCATCCGCC
TAAAGCTGCCTCGCGTGAGCGACCTAGGGTCCTCGGAGTTCGGCCGAGTC
CGCAAGAAGACGCTCAAGGCGGAGGAAGCCGATGGCCTTATAGCGGGGAC
AAGCGACGCCAGACGTTTCCTCATCAGGGCCGGTGACGGAGAAACCGTCG
ACAAGCGGAAGCAATCGACCGCTGCAGACGGTGGGCGGGAGAGGTGGCCG
ATTATATCGTCGGTTCCGGCGCAGGGCCGGTGACGGAGAAACCGTCGACA
AGCGGAAGCAATCGACCGCTGCAGACGGTGGGCGGGAGAGGTGGCCGATT
ATATCGTCGGTTCCGGCG
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