prot_H-elongata_contig56890.13141.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig56890.13141.1
Unique Nameprot_H-elongata_contig56890.13141.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length100
Homology
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BLAST of mRNA_H-elongata_contig56890.13141.1 vs. uniprot
Match: A0A6H5JT49_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT49_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 7.140e-43
Identity = 70/99 (70.71%), Postives = 86/99 (86.87%), Query Frame = 0 
Query:    1 MRGLWASEMMAVLVALFAIGVIELTVGRQDYIDRAPGELGEFGAFAKPVDEEEWENIQLAEIKHGRLAMLAVVGALVQEVVTGEGPVEQLLTGNINPFA 99
            ++GL ++E   V++ L   GV+ELT+G+QDY+DRAPGELGEFGAFAKPVD+EEW+ +Q+AE+KHGRLAML VVG LVQE+VTGEGPVEQLL GNI PFA
Sbjct:  136 LKGLLSTEGNNVVLFLLGTGVVELTIGKQDYVDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHGRLAMLGVVGCLVQELVTGEGPVEQLLNGNIFPFA 234
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BLAST of mRNA_H-elongata_contig56890.13141.1 vs. uniprot
Match: A0A835ZIK7_9STRA (Chlorophyll a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIK7_9STRA)

HSP 1 Score: 109 bits (273), Expect = 3.680e-28
Identity = 47/81 (58.02%), Postives = 65/81 (80.25%), Query Frame = 0 
Query:   18 AIGVIELTVGRQDYIDRAPGELGEFGAFAKPVDEEEWENIQLAEIKHGRLAMLAVVGALVQEVVTGEGPVEQLLTGNINPF 98
            A+G  EL++G+QDY ++APG++  FG F KP DE+EWE IQL E+K+GRLAM+A +G  VQE +TG+GP+EQL  G+I+PF
Sbjct:  101 AVGAFELSIGKQDYENKAPGDIATFGDFVKPSDEDEWEKIQLRELKNGRLAMVASIGMFVQEALTGQGPIEQLQVGHISPF 181
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BLAST of mRNA_H-elongata_contig56890.13141.1 vs. uniprot
Match: D5KBP8_ELYCH (Light harvesting complex protein 3 (Fragment) n=4 Tax=Eukaryota TaxID=2759 RepID=D5KBP8_ELYCH)

HSP 1 Score: 101 bits (251), Expect = 2.610e-25
Identity = 47/85 (55.29%), Postives = 66/85 (77.65%), Query Frame = 0 
Query:    5 WASEMMAVLVALFAIGVIELTVGRQDYIDRAPGELGEFGAFAKPVDEEEWENIQLAEIKHGRLAMLAVVGALVQEVVTGEGPVEQ 89
            +A   +A+   + AIG IEL++G+QDY ++APG+LG FG FAKP D  EWE +QL E+K+GRLAM+A++G LVQE +T +GP+EQ
Sbjct:   60 FAERPIAIWQIILAIGAIELSIGKQDYENKAPGDLGSFGDFAKPSDPIEWEKVQLRELKNGRLAMMAIMGMLVQEGLTKQGPLEQ 144
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BLAST of mRNA_H-elongata_contig56890.13141.1 vs. uniprot
Match: D8LBT8_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBT8_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 8.140e-24
Identity = 49/96 (51.04%), Postives = 65/96 (67.71%), Query Frame = 0 
Query:    5 WASEMMAVLVALFAIGVIELTVGRQDY--IDRAPGELGEFGAFAKPVDEEEWENIQLAEIKHGRLAMLAVVGALVQEVVTGEGPVEQLLTGNINPF 98
            W    + +L  +  +G+IELT+GR+DY   +  PG+LG+F   A+P D + W   QL E+KHGRLA L + G L QE+VT EGPVEQLL G+INPF
Sbjct:   74 WRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLGDFWQAARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLLKGDINPF 169
[Close]
BLAST of mRNA_H-elongata_contig56890.13141.1 vs. uniprot
Match: A0A835ZAI4_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAI4_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.330e-23
Identity = 47/88 (53.41%), Postives = 64/88 (72.73%), Query Frame = 0 
Query:   11 AVLVALFAIGVIELTVGRQDYIDRAPGELGEFGAFAKPVDEEEWENIQLAEIKHGRLAMLAVVGALVQEVVTGEGPVEQLLTGNINPF 98
            A +  L AIG++ELT G QDY ++APG+LG FG   KP D  E   +QL E+K+GRLAM+ ++G LVQE +T +GP+EQLL G+ +PF
Sbjct:  122 AAIQILLAIGLLELTAGAQDYANKAPGDLGRFGDAFKPDDAGELAELQLKELKNGRLAMMGIMGMLVQEGLTKQGPIEQLLVGHTSPF 209
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BLAST of mRNA_H-elongata_contig56890.13141.1 vs. uniprot
Match: W7U405_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U405_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 7.370e-23
Identity = 46/81 (56.79%), Postives = 64/81 (79.01%), Query Frame = 0 
Query:   18 AIGVIELTVGRQDYIDRAPGELGEFGAFAKPVDEEEWENIQLAEIKHGRLAMLAVVGALVQEVVTGEGPVEQLLTGNINPF 98
            AIG IELT+G+QD  +RAPG++G FGA   P D E++  +QL E+K+GRLAM+A++G  VQE +TG+GP+EQLL G+ +PF
Sbjct:  120 AIGAIELTIGKQDTANRAPGDVG-FGAAFIPDDAEDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGHFSPF 199
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BLAST of mRNA_H-elongata_contig56890.13141.1 vs. uniprot
Match: A0A6H5KVZ6_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVZ6_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 8.310e-23
Identity = 49/96 (51.04%), Postives = 64/96 (66.67%), Query Frame = 0 
Query:    5 WASEMMAVLVALFAIGVIELTVGRQDY--IDRAPGELGEFGAFAKPVDEEEWENIQLAEIKHGRLAMLAVVGALVQEVVTGEGPVEQLLTGNINPF 98
            W    + +L  +  +G+IELT+GR+DY   +  PG+LGE    A+P D + W   QL E+KHGRLA L + G L QE+VT EGPVEQLL G+INPF
Sbjct:  129 WRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLGELWQTARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLLKGDINPF 224
[Close]
BLAST of mRNA_H-elongata_contig56890.13141.1 vs. uniprot
Match: W7TRI0_9STRA (Light-harvesting protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRI0_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 3.180e-21
Identity = 45/89 (50.56%), Postives = 67/89 (75.28%), Query Frame = 0 
Query:   10 MAVLVALFAIGVIELTVGRQDYIDRAPGELGEFGAFAKPVDEEEWENIQLAEIKHGRLAMLAVVGALVQEVVTGEGPVEQLLTGNINPF 98
            +A+L  + AI +IE+T G+QD  + APG+LG FG   KP  E E   +QL E+K+GRLAM+A++G  VQE++TG+GP+EQ+ +G+I+PF
Sbjct:   81 LAILQIVIAITLIEVTSGKQDP-ELAPGQLGRFGEAFKPEGEAEMAAVQLKELKNGRLAMVAIIGQWVQELLTGQGPIEQITSGHISPF 168
[Close]
BLAST of mRNA_H-elongata_contig56890.13141.1 vs. uniprot
Match: W7TXE6_9STRA (Light harvesting complex protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXE6_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 9.960e-21
Identity = 47/83 (56.63%), Postives = 64/83 (77.11%), Query Frame = 0 
Query:   16 LFAIGVIELTVGRQDYIDRAPGELGEFGAFAKPVDEEEWENIQLAEIKHGRLAMLAVVGALVQEVVTGEGPVEQLLTGNINPF 98
            +  +GVIE T GRQ   DRAPG+L  FG+   P  E+E+E +QL E+K+GRLAM+A +GAL+QE +TG+GPVEQ+L G++NPF
Sbjct:  123 IVGLGVIEFTGGRQKE-DRAPGDLN-FGSSFIPKSEKEFEELQLKELKNGRLAMVASMGALLQEYLTGQGPVEQVLAGHLNPF 203
[Close]
BLAST of mRNA_H-elongata_contig56890.13141.1 vs. uniprot
Match: D7FPU8_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPU8_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 4.460e-20
Identity = 44/85 (51.76%), Postives = 63/85 (74.12%), Query Frame = 0 
Query:   16 LFAIGVIELTVGRQDYIDRAPGELGEFGAFAKPVDEEE--WENIQLAEIKHGRLAMLAVVGALVQEVVTGEGPVEQLLTGNINPF 98
            L AI V+ELTVG+QDY ++APGELG FG    P  +    +  +QL E+K+GRLAMLA++G +VQE +TG+  +EQL +G+++PF
Sbjct:  125 LGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLTSGHLSPF 209
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56890.13141.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JT49_9PHAE7.140e-4370.71LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A835ZIK7_9STRA3.680e-2858.02Chlorophyll a/b-binding protein domain-containing ... [more]
D5KBP8_ELYCH2.610e-2555.29Light harvesting complex protein 3 (Fragment) n=4 ... [more]
D8LBT8_ECTSI8.140e-2451.04Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A835ZAI4_9STRA2.330e-2353.41Light harvesting complex protein n=1 Tax=Tribonema... [more]
W7U405_9STRA7.370e-2356.79Light-harvesting protein n=2 Tax=Monodopsidaceae T... [more]
A0A6H5KVZ6_9PHAE8.310e-2351.04LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
W7TRI0_9STRA3.180e-2150.56Light-harvesting protein n=1 Tax=Nannochloropsis g... [more]
W7TXE6_9STRA9.960e-2156.63Light harvesting complex protein n=3 Tax=Monodopsi... [more]
D7FPU8_ECTSI4.460e-2051.76Light harvesting complex protein n=2 Tax=Ectocarpu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023329Chlorophyll a/b binding domain superfamilyGENE3D1.10.3460.10coord: 2..99
e-value: 2.4E-19
score: 71.6
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 30..83
e-value: 9.4E-11
score: 42.5
coord: 10..79
e-value: 2.1E-10
score: 41.3
IPR001344Chlorophyll A-B binding protein, plantPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 11..93
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 11..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..99
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..10
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 23..27
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..27
score: 0.718
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 7..98
NoneNo IPR availableTMHMMTMhelixcoord: 4..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56890contigH-elongata_contig56890:1126..3275 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56890.13141.1mRNA_H-elongata_contig56890.13141.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig56890 772..3285 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig56890.13141.1 ID=prot_H-elongata_contig56890.13141.1|Name=mRNA_H-elongata_contig56890.13141.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MRGLWASEMMAVLVALFAIGVIELTVGRQDYIDRAPGELGEFGAFAKPVD
EEEWENIQLAEIKHGRLAMLAVVGALVQEVVTGEGPVEQLLTGNINPFA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023329Chlorophyll_a/b-bd_dom_sf
IPR022796Chloroa_b-bind
IPR001344Chloro_AB-bd_pln