mRNA_H-elongata_contig56890.13141.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig56890.13141.1 vs. uniprot
Match: A0A6H5JT49_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT49_9PHAE) HSP 1 Score: 151 bits (381), Expect = 5.370e-42 Identity = 73/102 (71.57%), Postives = 89/102 (87.25%), Query Frame = 2
Query: 2 LAVMRGLWASEMMAVLVALFAIGVIELTVGRQDYIDRAPGELGEFGAFAKPVDEEEWENIQLAEIKHGRLAMLAVVGALVQEVVTGEGPVEQLLTGNINPFA 307
LAV++GL ++E V++ L GV+ELT+G+QDY+DRAPGELGEFGAFAKPVD+EEW+ +Q+AE+KHGRLAML VVG LVQE+VTGEGPVEQLL GNI PFA
Sbjct: 133 LAVLKGLLSTEGNNVVLFLLGTGVVELTIGKQDYVDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHGRLAMLGVVGCLVQELVTGEGPVEQLLNGNIFPFA 234
BLAST of mRNA_H-elongata_contig56890.13141.1 vs. uniprot
Match: A0A835ZIK7_9STRA (Chlorophyll a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIK7_9STRA) HSP 1 Score: 109 bits (273), Expect = 2.170e-26 Identity = 47/81 (58.02%), Postives = 65/81 (80.25%), Query Frame = 2
Query: 62 AIGVIELTVGRQDYIDRAPGELGEFGAFAKPVDEEEWENIQLAEIKHGRLAMLAVVGALVQEVVTGEGPVEQLLTGNINPF 304
A+G EL++G+QDY ++APG++ FG F KP DE+EWE IQL E+K+GRLAM+A +G VQE +TG+GP+EQL G+I+PF
Sbjct: 101 AVGAFELSIGKQDYENKAPGDIATFGDFVKPSDEDEWEKIQLRELKNGRLAMVASIGMFVQEALTGQGPIEQLQVGHISPF 181
BLAST of mRNA_H-elongata_contig56890.13141.1 vs. uniprot
Match: D5KBP8_ELYCH (Light harvesting complex protein 3 (Fragment) n=4 Tax=Eukaryota TaxID=2759 RepID=D5KBP8_ELYCH) HSP 1 Score: 100 bits (250), Expect = 1.930e-23 Identity = 47/85 (55.29%), Postives = 66/85 (77.65%), Query Frame = 2
Query: 23 WASEMMAVLVALFAIGVIELTVGRQDYIDRAPGELGEFGAFAKPVDEEEWENIQLAEIKHGRLAMLAVVGALVQEVVTGEGPVEQ 277
+A +A+ + AIG IEL++G+QDY ++APG+LG FG FAKP D EWE +QL E+K+GRLAM+A++G LVQE +T +GP+EQ
Sbjct: 60 FAERPIAIWQIILAIGAIELSIGKQDYENKAPGDLGSFGDFAKPSDPIEWEKVQLRELKNGRLAMMAIMGMLVQEGLTKQGPLEQ 144
BLAST of mRNA_H-elongata_contig56890.13141.1 vs. uniprot
Match: D8LBT8_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBT8_ECTSI) HSP 1 Score: 97.4 bits (241), Expect = 8.070e-22 Identity = 49/96 (51.04%), Postives = 65/96 (67.71%), Query Frame = 2
Query: 23 WASEMMAVLVALFAIGVIELTVGRQDY--IDRAPGELGEFGAFAKPVDEEEWENIQLAEIKHGRLAMLAVVGALVQEVVTGEGPVEQLLTGNINPF 304
W + +L + +G+IELT+GR+DY + PG+LG+F A+P D + W QL E+KHGRLA L + G L QE+VT EGPVEQLL G+INPF
Sbjct: 74 WRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLGDFWQAARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLLKGDINPF 169
BLAST of mRNA_H-elongata_contig56890.13141.1 vs. uniprot
Match: A0A835ZAI4_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAI4_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 2.300e-21 Identity = 46/83 (55.42%), Postives = 62/83 (74.70%), Query Frame = 2
Query: 56 LFAIGVIELTVGRQDYIDRAPGELGEFGAFAKPVDEEEWENIQLAEIKHGRLAMLAVVGALVQEVVTGEGPVEQLLTGNINPF 304
L AIG++ELT G QDY ++APG+LG FG KP D E +QL E+K+GRLAM+ ++G LVQE +T +GP+EQLL G+ +PF
Sbjct: 127 LLAIGLLELTAGAQDYANKAPGDLGRFGDAFKPDDAGELAELQLKELKNGRLAMMGIMGMLVQEGLTKQGPIEQLLVGHTSPF 209
BLAST of mRNA_H-elongata_contig56890.13141.1 vs. uniprot
Match: W7U405_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U405_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 3.610e-21 Identity = 46/81 (56.79%), Postives = 64/81 (79.01%), Query Frame = 2
Query: 62 AIGVIELTVGRQDYIDRAPGELGEFGAFAKPVDEEEWENIQLAEIKHGRLAMLAVVGALVQEVVTGEGPVEQLLTGNINPF 304
AIG IELT+G+QD +RAPG++G FGA P D E++ +QL E+K+GRLAM+A++G VQE +TG+GP+EQLL G+ +PF
Sbjct: 120 AIGAIELTIGKQDTANRAPGDVG-FGAAFIPDDAEDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGHFSPF 199
BLAST of mRNA_H-elongata_contig56890.13141.1 vs. uniprot
Match: A0A6H5KVZ6_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVZ6_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 8.050e-21 Identity = 49/96 (51.04%), Postives = 64/96 (66.67%), Query Frame = 2
Query: 23 WASEMMAVLVALFAIGVIELTVGRQDY--IDRAPGELGEFGAFAKPVDEEEWENIQLAEIKHGRLAMLAVVGALVQEVVTGEGPVEQLLTGNINPF 304
W + +L + +G+IELT+GR+DY + PG+LGE A+P D + W QL E+KHGRLA L + G L QE+VT EGPVEQLL G+INPF
Sbjct: 129 WRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLGELWQTARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLLKGDINPF 224
BLAST of mRNA_H-elongata_contig56890.13141.1 vs. uniprot
Match: W7TRI0_9STRA (Light-harvesting protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRI0_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 2.810e-19 Identity = 45/89 (50.56%), Postives = 67/89 (75.28%), Query Frame = 2
Query: 38 MAVLVALFAIGVIELTVGRQDYIDRAPGELGEFGAFAKPVDEEEWENIQLAEIKHGRLAMLAVVGALVQEVVTGEGPVEQLLTGNINPF 304
+A+L + AI +IE+T G+QD + APG+LG FG KP E E +QL E+K+GRLAM+A++G VQE++TG+GP+EQ+ +G+I+PF
Sbjct: 81 LAILQIVIAITLIEVTSGKQDP-ELAPGQLGRFGEAFKPEGEAEMAAVQLKELKNGRLAMVAIIGQWVQELLTGQGPIEQITSGHISPF 168
BLAST of mRNA_H-elongata_contig56890.13141.1 vs. uniprot
Match: W7TXE6_9STRA (Light harvesting complex protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXE6_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 4.460e-19 Identity = 50/101 (49.50%), Postives = 72/101 (71.29%), Query Frame = 2
Query: 2 LAVMRGLWASEMMAVLVALFAIGVIELTVGRQDYIDRAPGELGEFGAFAKPVDEEEWENIQLAEIKHGRLAMLAVVGALVQEVVTGEGPVEQLLTGNINPF 304
LA ++ ++ A+ + +GVIE T GRQ DRAPG+L FG+ P E+E+E +QL E+K+GRLAM+A +GAL+QE +TG+GPVEQ+L G++NPF
Sbjct: 105 LAALQQVYEQRPEAIWQIIVGLGVIEFTGGRQKE-DRAPGDLN-FGSSFIPKSEKEFEELQLKELKNGRLAMVASMGALLQEYLTGQGPVEQVLAGHLNPF 203
BLAST of mRNA_H-elongata_contig56890.13141.1 vs. uniprot
Match: D7FPU8_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPU8_ECTSI) HSP 1 Score: 89.4 bits (220), Expect = 2.710e-18 Identity = 43/83 (51.81%), Postives = 62/83 (74.70%), Query Frame = 2
Query: 62 AIGVIELTVGRQDYIDRAPGELGEFGAFAKPVDEEE--WENIQLAEIKHGRLAMLAVVGALVQEVVTGEGPVEQLLTGNINPF 304
AI V+ELTVG+QDY ++APGELG FG P + + +QL E+K+GRLAMLA++G +VQE +TG+ +EQL +G+++PF
Sbjct: 127 AIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLTSGHLSPF 209 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56890.13141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig56890.13141.1 >prot_H-elongata_contig56890.13141.1 ID=prot_H-elongata_contig56890.13141.1|Name=mRNA_H-elongata_contig56890.13141.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp MRGLWASEMMAVLVALFAIGVIELTVGRQDYIDRAPGELGEFGAFAKPVDback to top mRNA from alignment at H-elongata_contig56890:772..3285- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig56890.13141.1 ID=mRNA_H-elongata_contig56890.13141.1|Name=mRNA_H-elongata_contig56890.13141.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2514bp|location=Sequence derived from alignment at H-elongata_contig56890:772..3285- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig56890:772..3285- >mRNA_H-elongata_contig56890.13141.1 ID=mRNA_H-elongata_contig56890.13141.1|Name=mRNA_H-elongata_contig56890.13141.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig56890:772..3285- (Himanthalia elongata Himel1 dioecious)back to top |