prot_H-elongata_contig54754.12867.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig54754.12867.1
Unique Nameprot_H-elongata_contig54754.12867.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length239
Homology
BLAST of mRNA_H-elongata_contig54754.12867.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 2.440e-36
Identity = 77/182 (42.31%), Postives = 108/182 (59.34%), Query Frame = 0
Query:   46 QADPCVFRRILHGIVVVVIMVYVDDLLVASAAKRDENQAERDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKCDQHQYIQTVAERFGVTKTSIIPSAAGGKSLSKSDSQQTGAEVEEMRQIPYREIFGVLMWAATMTRADISFAAHQLANFNDNPGPTHWRAAQKALQYLWRTRDVGITYR 227
            +ADPCVFR+++  +VV++I++YVDD+LVA + + D  +    L   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS IP+  G     K + ++ G       + P RE  G +MW +T +R D+SFA   +A     P   HW A QK L YL  TRD+GITY+
Sbjct:  199 KADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG-------EWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ 372          
BLAST of mRNA_H-elongata_contig54754.12867.1 vs. uniprot
Match: A0A6A4BM10_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4BM10_9STRA)

HSP 1 Score: 139 bits (351), Expect = 3.680e-36
Identity = 78/244 (31.97%), Postives = 123/244 (50.41%), Query Frame = 0
Query:    2 VLSMITALGWEARQLDADMAYLEAEVEEEIYVEASRPIKEGNRSQADPCVFRRILHGI-------------VVVVIMVYVDDLLVASAAKRDENQAERDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKCDQHQYIQTVAERFGVTKTS-IIPSAAGGKSLSKSDSQQTGAEVEEMRQIPYREIFGVLMWAATMTRADISFAAHQLANFNDNPGPTHWRAAQKALQYLWRTRDVGITYRGEPG 231
            VLS++ A  +   QLDAD A+L ++++E+++ E    I          C   + ++ +               V + +YVDD+++A+    + N+ +  L S F +K+LGE  +  G  I  DR AGTL   Q +YI  V  R        ++     G  L+K  S  T AE + M+  PYR + G L++  T TR D+ +   QL+ F +NPG  HW+AA + L+YL  T+D+GI Y    G
Sbjct:   43 VLSVVVAKAYVTEQLDADTAFLNSDLKEQVFTEVPYGITNAENMM---CKLDKAIYAVGPTSCVYVKGTKDAFVYVCLYVDDMIIAAKTTEEINEVKMALKSAFKMKELGETKFIFGMEIDHDRMAGTLMIKQTRYIDDVTNRVNQQDAKEVVNPCESGMKLTKMQSPTTNAERQAMKTKPYRSLIGCLLYITTCTRPDVVYIVTQLSRFLENPGQQHWKAAIRVLRYLKSTKDLGIIYNSNDG 283          
BLAST of mRNA_H-elongata_contig54754.12867.1 vs. uniprot
Match: A0A6H5JVD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD4_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 5.090e-36
Identity = 79/182 (43.41%), Postives = 106/182 (58.24%), Query Frame = 0
Query:   46 QADPCVFRRILHGIVVVVIMVYVDDLLVASAAKRDENQAERDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKCDQHQYIQTVAERFGVTKTSIIPSAAGGKSLSKSDSQQTGAEVEEMRQIPYREIFGVLMWAATMTRADISFAAHQLANFNDNPGPTHWRAAQKALQYLWRTRDVGITYR 227
            +ADPCVFR+++  +VV++I++YVDD+LVA + + D  +    L   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS IP A  G  L      + G E       P RE  G +MW +T +R D+SFA   +A     P   HW A QK L YL  TRD+GITY+
Sbjct:  135 KADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVQSTSRIP-ATPGADLGPQREDEEGGEW------PVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ 308          
BLAST of mRNA_H-elongata_contig54754.12867.1 vs. uniprot
Match: A0A2N9FYA1_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FYA1_FAGSY)

HSP 1 Score: 144 bits (362), Expect = 1.290e-35
Identity = 82/229 (35.81%), Postives = 125/229 (54.59%), Query Frame = 0
Query:    1 MVLSMITALGWEARQLDADMAYLEAEVEEEIYVEASRPIKEGNRSQADPCVFRRILHGIVVVVIMVYVDDLLVASAAKRDENQAERDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKCDQHQYIQTVAERFGVTKTSIIPSAAG-GKSLSKSDSQQTGAEVEEMRQIPYREIFGVLMWAATMTRADISFAAHQLANFNDNPGPTHWRAAQKALQYLWRTRDVGITYRG 228
            ++L+M+ +L  E  Q+D   A+L  E+++EI+++ S       + + D CV+ +   G   +++ +YVDD+L+A   K      +  L S F +KD+GEAS+ LG  I RDR    L   Q  YI+ V ERF +     I +  G G SLS     +T  E+E M ++PY    G LM+A   TR DI FA   ++ F  NPGP HW+A ++ L+YL    D  + Y+G
Sbjct:  552 LILAMVASLDLELHQMDVKTAFLNGELDKEIFMDQSIGFVVKGQERKDHCVYVKRSEG-SFIILSLYVDDILLAENDKEFIKTIKEWLSSTFEMKDMGEASFVLGVKILRDRLKKLLGLSQETYIRKVLERFHMQDCKPIDTHVGKGDSLSSEMCPKTQVEIESMARVPYTNAIGSLMYAILCTRPDICFAVGLVSKFQSNPGPAHWKAVKRILRYLHGIEDYMLCYQG 779          
BLAST of mRNA_H-elongata_contig54754.12867.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 2.460e-35
Identity = 77/182 (42.31%), Postives = 108/182 (59.34%), Query Frame = 0
Query:   46 QADPCVFRRILHGIVVVVIMVYVDDLLVASAAKRDENQAERDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKCDQHQYIQTVAERFGVTKTSIIPSAAGGKSLSKSDSQQTGAEVEEMRQIPYREIFGVLMWAATMTRADISFAAHQLANFNDNPGPTHWRAAQKALQYLWRTRDVGITYR 227
            +ADPCVFR+++  +VV++I++YVDD+LVA + + D  +    L   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS IP+  G     K + ++ G       + P RE  G +MW +T +R D+SFA   +A     P   HW A QK L YL  TRD+GITY+
Sbjct:  912 KADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG-------EWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ 1085          
BLAST of mRNA_H-elongata_contig54754.12867.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 2.470e-35
Identity = 77/182 (42.31%), Postives = 109/182 (59.89%), Query Frame = 0
Query:   46 QADPCVFRRILHGIVVVVIMVYVDDLLVASAAKRDENQAERDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKCDQHQYIQTVAERFGVTKTSIIPSAAGGKSLSKSDSQQTGAEVEEMRQIPYREIFGVLMWAATMTRADISFAAHQLANFNDNPGPTHWRAAQKALQYLWRTRDVGITYR 227
            +ADPCVFR+++  +VV++I++YVDD+LVA + + D  +    L   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS IP+  G     K + ++ G       + P R+  G +MW +T +R D+SFAA  +A     P   HW A QK L YL  TRD+GITY+
Sbjct: 1021 KADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG-------EWPVRKAIGSMMWVSTFSRPDVSFAARAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ 1194          
BLAST of mRNA_H-elongata_contig54754.12867.1 vs. uniprot
Match: A0A6H5JRE9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE9_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 2.480e-35
Identity = 90/248 (36.29%), Postives = 129/248 (52.02%), Query Frame = 0
Query:    1 MVLSMITALGWEARQLDADMAYLEA-EVEEEIYVEASRPI---KEGNRS-----------------QADPCVFRRILHGIVVVVIMVYVDDLLVASAAKRDENQAERDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKCDQHQYIQTVAERFGVTKTSIIPSAAGGKSLSKSDSQQTGAEVEEMRQIPYREIFGVLMWAATMTRADISFAAHQLANFNDNPGPTHWRAAQKALQYLWRTRDVGITYR 227
            ++L++    G      D   AY  A + EE+  V+A R I   K+  R                  +ADPCVFR+++  +VV++I++YVDD+LVA + + D  +    L   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS IP+  G     K + ++ G       + P RE  G +MW +T +R D+SFA   +      P   HW A QK L YL  TRD+GITY+
Sbjct:  783 LMLAVANEKGMNLNHWDVKQAYTHATQDEEQKIVKAERAIYGLKQSGRQFGYHAADTQVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKMFPTKNLGECEWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG-------EWPVREAIGSMMWVSTFSRPDVSFAVRAVVRHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ 1022          
BLAST of mRNA_H-elongata_contig54754.12867.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 2.560e-35
Identity = 77/182 (42.31%), Postives = 108/182 (59.34%), Query Frame = 0
Query:   46 QADPCVFRRILHGIVVVVIMVYVDDLLVASAAKRDENQAERDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKCDQHQYIQTVAERFGVTKTSIIPSAAGGKSLSKSDSQQTGAEVEEMRQIPYREIFGVLMWAATMTRADISFAAHQLANFNDNPGPTHWRAAQKALQYLWRTRDVGITYR 227
            +ADPCVFR+++  +VV++I++YVDD+LVA + + D  +    L   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS IP+  G     K + ++ G       + P RE  G +MW +T +R D+SFA   +A     P   HW A QK L YL  TRD+GITY+
Sbjct: 1291 KADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG-------EWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ 1464          
BLAST of mRNA_H-elongata_contig54754.12867.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 2.570e-35
Identity = 77/182 (42.31%), Postives = 108/182 (59.34%), Query Frame = 0
Query:   46 QADPCVFRRILHGIVVVVIMVYVDDLLVASAAKRDENQAERDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKCDQHQYIQTVAERFGVTKTSIIPSAAGGKSLSKSDSQQTGAEVEEMRQIPYREIFGVLMWAATMTRADISFAAHQLANFNDNPGPTHWRAAQKALQYLWRTRDVGITYR 227
            +ADPCVFR+++  +VV++I++YVDD+LVA + + D  +    L   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS IP+  G     K + ++ G       + P RE  G +MW +T +R D+SFA   +A     P   HW A QK L YL  TRD+GITY+
Sbjct: 1311 KADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG-------EWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ 1484          
BLAST of mRNA_H-elongata_contig54754.12867.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 2.580e-35
Identity = 77/182 (42.31%), Postives = 108/182 (59.34%), Query Frame = 0
Query:   46 QADPCVFRRILHGIVVVVIMVYVDDLLVASAAKRDENQAERDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKCDQHQYIQTVAERFGVTKTSIIPSAAGGKSLSKSDSQQTGAEVEEMRQIPYREIFGVLMWAATMTRADISFAAHQLANFNDNPGPTHWRAAQKALQYLWRTRDVGITYR 227
            +ADPCVFR+++  +VV++I++YVDD+LVA + + D  +    L   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS IP+  G     K + ++ G       + P RE  G +MW +T +R D+SFA   +A     P   HW A QK L YL  TRD+GITY+
Sbjct: 1454 KADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG-------EWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ 1627          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54754.12867.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTL3_9PHAE2.440e-3642.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A4BM10_9STRA3.680e-3631.97Uncharacterized protein (Fragment) n=2 Tax=Phytoph... [more]
A0A6H5JVD4_9PHAE5.090e-3643.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2N9FYA1_FAGSY1.290e-3535.81Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A6H5KSG8_9PHAE2.460e-3542.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQW4_9PHAE2.470e-3542.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRE9_9PHAE2.480e-3536.29Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE2.560e-3542.31Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE2.570e-3542.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE2.580e-3542.31Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 61..137
e-value: 4.0E-12
score: 46.3
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 53..219

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54754contigH-elongata_contig54754:2897..3685 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54754.12867.1mRNA_H-elongata_contig54754.12867.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig54754 2791..3811 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig54754.12867.1 ID=prot_H-elongata_contig54754.12867.1|Name=mRNA_H-elongata_contig54754.12867.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=239bp
MVLSMITALGWEARQLDADMAYLEAEVEEEIYVEASRPIKEGNRSQADPC
VFRRILHGIVVVVIMVYVDDLLVASAAKRDENQAERDLCSCFPIKDLGEA
SYYLGCHITRDRNAGTLKCDQHQYIQTVAERFGVTKTSIIPSAAGGKSLS
KSDSQQTGAEVEEMRQIPYREIFGVLMWAATMTRADISFAAHQLANFNDN
PGPTHWRAAQKALQYLWRTRDVGITYRGEPGGGGKLSA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2