prot_H-elongata_contig53482.12691.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig53482.12691.1
Unique Nameprot_H-elongata_contig53482.12691.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length104
Homology
BLAST of mRNA_H-elongata_contig53482.12691.1 vs. uniprot
Match: D8LLK7_ECTSI (COG0557: Exoribonuclease R n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK7_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 3.080e-47
Identity = 83/103 (80.58%), Postives = 93/103 (90.29%), Query Frame = 0
Query:    1 TRKVDDGLSVETLPNG-GEMVWVHIADVSRWVPEGSPLYQESRARRTTSYLPEGSVPMFPAEVAHGVLSLRAGKECYALSMGIALGENGEITDVRVTPSLVKV 102
            T +VDDGLSVE LP+G GE VWVHIADVSRWVPEGSPLY+E+R +RTT YLPEG+ PMFPAEVAHGVLSLR+G ECY+LSMGI LGE+GEITDV VTP+LVKV
Sbjct:  335 TNEVDDGLSVEALPDGAGERVWVHIADVSRWVPEGSPLYEEARRKRTTIYLPEGAEPMFPAEVAHGVLSLRSGHECYSLSMGITLGESGEITDVIVTPALVKV 437          
BLAST of mRNA_H-elongata_contig53482.12691.1 vs. uniprot
Match: A0A6H5KWU3_9PHAE (RNB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU3_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.840e-30
Identity = 59/71 (83.10%), Postives = 64/71 (90.14%), Query Frame = 0
Query:    1 TRKVDDGLSVETLPNG-GEMVWVHIADVSRWVPEGSPLYQESRARRTTSYLPEGSVPMFPAEVAHGVLSLR 70
            T +VDDGLSVE LP+G GE VWVHIADVSRWVPEGSPLY+E+R RRTT YLPEG+ PMFPAEVAHGVLSLR
Sbjct:  433 TNEVDDGLSVEALPDGAGERVWVHIADVSRWVPEGSPLYEEARRRRTTIYLPEGAEPMFPAEVAHGVLSLR 503          
BLAST of mRNA_H-elongata_contig53482.12691.1 vs. uniprot
Match: K9RQP0_SYNP3 (Exoribonuclease R n=1 Tax=Synechococcus sp. (strain ATCC 27167 / PCC 6312) TaxID=195253 RepID=K9RQP0_SYNP3)

HSP 1 Score: 122 bits (307), Expect = 2.190e-30
Identity = 58/101 (57.43%), Postives = 74/101 (73.27%), Query Frame = 0
Query:    1 TRKVDDGLSVETLPNGGEMVWVHIADVSRWVPEGSPLYQESRARRTTSYLPEGSVPMFPAEVAHGVLSLRAGKECYALSMGIALGENGEITDVRVTPSLVK 101
            T+++DDG+S+ETLPNG E +W+HIAD SRW+  G  L QE+R R TT YLP G +PMFP E+A G +SL AGK C ALS GI L  +G I D ++ PSL+K
Sbjct:  284 TQEIDDGISLETLPNGQERLWIHIADPSRWLLLGDGLEQEARRRATTVYLPTGMIPMFPPELATGPMSLVAGKTCCALSFGIILQPDGSIADYQICPSLIK 384          
BLAST of mRNA_H-elongata_contig53482.12691.1 vs. uniprot
Match: A0A251WEU1_9CYAN (RNB domain-containing ribonuclease n=2 Tax=unclassified Alkalinema TaxID=2635015 RepID=A0A251WEU1_9CYAN)

HSP 1 Score: 114 bits (286), Expect = 1.600e-27
Identity = 54/102 (52.94%), Postives = 69/102 (67.65%), Query Frame = 0
Query:    1 TRKVDDGLSVETLPNGGEMVWVHIADVSRWVPEGSPLYQESRARRTTSYLPEGSVPMFPAEVAHGVLSLRAGKECYALSMGIALGENGEITDVRVTPSLVKV 102
            TR++DDGLSVE LP+G E VW+HIAD +RW+  G PL  E+R R TT YLP G + MFP E+A G +SL AG  C ALS G+ L  NG + D  +  S +K+
Sbjct:  282 TREIDDGLSVEYLPDGSERVWIHIADPTRWLLPGDPLDLEARRRSTTLYLPTGMISMFPTELATGPMSLNAGAVCCALSFGVLLDANGAVQDFNIHASHIKI 383          
BLAST of mRNA_H-elongata_contig53482.12691.1 vs. uniprot
Match: A0A835Z4Y9_9STRA (RNB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4Y9_9STRA)

HSP 1 Score: 114 bits (285), Expect = 2.340e-27
Identity = 57/95 (60.00%), Postives = 69/95 (72.63%), Query Frame = 0
Query:    8 LSVETLPNGGEMVWVHIADVSRWVPEGSPLYQESRARRTTSYLPEGSVPMFPAEVAHGVLSLRAGKECYALSMGIALGENGEITDVRVTPSLVKV 102
            +SVE LPNG E VWVHIADVSRWV +GS L Q++  R+TT YLPE SVPMFP ++A  VLSL AG+ C ALSMG+ L + G I D+ V  S + V
Sbjct:  439 VSVERLPNGRERVWVHIADVSRWVQQGSALDQDAARRQTTLYLPEQSVPMFPRDLAENVLSLTAGRPCPALSMGVILNDAGAIEDLTVVASTIVV 533          
BLAST of mRNA_H-elongata_contig53482.12691.1 vs. uniprot
Match: A0A7T5E447_9CYAN (RNB domain-containing protein n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A7T5E447_9CYAN)

HSP 1 Score: 114 bits (284), Expect = 3.000e-27
Identity = 54/101 (53.47%), Postives = 72/101 (71.29%), Query Frame = 0
Query:    1 TRKVDDGLSVETLPNGGEMVWVHIADVSRWVPEGSPLYQESRARRTTSYLPEGSVPMFPAEVAHGVLSLRAGKECYALSMGIALGENGEITDVRVTPSLVK 101
            T+++DDGLS+ETL +G + +W+HIAD +RWV  G  L  E+R R TT YLP G +PMFPAE+A G +SL  G+ C ALS GI LGE G++ D  +  SL+K
Sbjct:  282 TQEIDDGLSLETLEDGRQRIWIHIADPTRWVIPGDDLDLEARRRCTTVYLPTGIIPMFPAELATGPMSLVQGQICCALSFGIVLGEAGDVQDYTIATSLIK 382          
BLAST of mRNA_H-elongata_contig53482.12691.1 vs. uniprot
Match: UPI0019DC012E (VacB/RNase II family 3'-5' exoribonuclease n=1 Tax=Leptolyngbyaceae cyanobacterium M65_K2018_010 TaxID=2747810 RepID=UPI0019DC012E)

HSP 1 Score: 114 bits (284), Expect = 3.000e-27
Identity = 52/101 (51.49%), Postives = 72/101 (71.29%), Query Frame = 0
Query:    1 TRKVDDGLSVETLPNGGEMVWVHIADVSRWVPEGSPLYQESRARRTTSYLPEGSVPMFPAEVAHGVLSLRAGKECYALSMGIALGENGEITDVRVTPSLVK 101
            T+++DDGLS+ETL NG + +W+H+AD +RW+  G  L  E+R R TT YLP G +PMFP E+A G +SLR G+ C ALS G++L   G+I D  + PSL+K
Sbjct:  281 TQEIDDGLSLETLANGTQRLWIHVADPTRWLLPGDALDLEARRRCTTLYLPTGMIPMFPVELATGPMSLRQGEVCCALSFGVSLTAAGDIADYTICPSLIK 381          
BLAST of mRNA_H-elongata_contig53482.12691.1 vs. uniprot
Match: UPI001683B28D (ribonuclease R n=2 Tax=Leptolyngbya TaxID=47251 RepID=UPI001683B28D)

HSP 1 Score: 113 bits (283), Expect = 4.100e-27
Identity = 54/101 (53.47%), Postives = 70/101 (69.31%), Query Frame = 0
Query:    1 TRKVDDGLSVETLPNGGEMVWVHIADVSRWVPEGSPLYQESRARRTTSYLPEGSVPMFPAEVAHGVLSLRAGKECYALSMGIALGENGEITDVRVTPSLVK 101
            TR++DDG+SVE LP+G   +WVHIAD +RWV  G  L  E+R R TT YLP G +PMFP+E+A G +SL  G+ C ALS G+ L E G I +  + PSL+K
Sbjct:  288 TREIDDGVSVEFLPDGRHRLWVHIADPTRWVMPGDDLDLEARRRSTTVYLPTGMIPMFPSELATGPMSLNQGQVCTALSFGVILDEMGAIEEYEIHPSLIK 388          
BLAST of mRNA_H-elongata_contig53482.12691.1 vs. uniprot
Match: UPI0019FFB23C (VacB/RNase II family 3'-5' exoribonuclease n=1 Tax=Leptolyngbyaceae cyanobacterium T60_A2020_046 TaxID=2747813 RepID=UPI0019FFB23C)

HSP 1 Score: 113 bits (282), Expect = 5.590e-27
Identity = 52/101 (51.49%), Postives = 72/101 (71.29%), Query Frame = 0
Query:    1 TRKVDDGLSVETLPNGGEMVWVHIADVSRWVPEGSPLYQESRARRTTSYLPEGSVPMFPAEVAHGVLSLRAGKECYALSMGIALGENGEITDVRVTPSLVK 101
            T+++DDG+S+ETL +G + +W+HIAD +RWV  G  L  E+R R TT YLP G VPMFP E+A G +SL  G+EC ALS G+ L E+G + +  +T SL+K
Sbjct:  282 TQEIDDGISLETLTDGRQRIWIHIADPTRWVLPGDALDLEARRRCTTLYLPTGMVPMFPLELAAGPMSLTQGRECCALSFGVVLSEDGAVEEYCITASLIK 382          
BLAST of mRNA_H-elongata_contig53482.12691.1 vs. uniprot
Match: A0A6G3YVK1_9CYAN (VacB/RNase II family 3'-5' exoribonuclease n=1 Tax=Leptolyngbya sp. SIO1D8 TaxID=2607807 RepID=A0A6G3YVK1_9CYAN)

HSP 1 Score: 113 bits (282), Expect = 5.600e-27
Identity = 57/101 (56.44%), Postives = 69/101 (68.32%), Query Frame = 0
Query:    1 TRKVDDGLSVETLPNGGEMVWVHIADVSRWVPEGSPLYQESRARRTTSYLPEGSVPMFPAEVAHGVLSLRAGKECYALSMGIALGENGEITDVRVTPSLVK 101
            TR++DDGLSVETL +G + +WVHIAD +RWV  G  L  E+R R TT YLP G VPMFP E+A G +SL  GK+C ALS G+ L E G I D  +  S VK
Sbjct:  281 TREIDDGLSVETLEDGRQRLWVHIADPTRWVLPGDDLDLEARRRCTTLYLPTGMVPMFPMELATGPMSLVQGKDCCALSFGVVLTEEGAIEDYSIAASRVK 381          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53482.12691.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLK7_ECTSI3.080e-4780.58COG0557: Exoribonuclease R n=1 Tax=Ectocarpus sili... [more]
A0A6H5KWU3_9PHAE1.840e-3083.10RNB domain-containing protein n=1 Tax=Ectocarpus s... [more]
K9RQP0_SYNP32.190e-3057.43Exoribonuclease R n=1 Tax=Synechococcus sp. (strai... [more]
A0A251WEU1_9CYAN1.600e-2752.94RNB domain-containing ribonuclease n=2 Tax=unclass... [more]
A0A835Z4Y9_9STRA2.340e-2760.00RNB domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7T5E447_9CYAN3.000e-2753.47RNB domain-containing protein n=3 Tax=Cyanobacteri... [more]
UPI0019DC012E3.000e-2751.49VacB/RNase II family 3'-5' exoribonuclease n=1 Tax... [more]
UPI001683B28D4.100e-2753.47ribonuclease R n=2 Tax=Leptolyngbya TaxID=47251 Re... [more]
UPI0019FFB23C5.590e-2751.49VacB/RNase II family 3'-5' exoribonuclease n=1 Tax... [more]
A0A6G3YVK1_9CYAN5.600e-2756.44VacB/RNase II family 3'-5' exoribonuclease n=1 Tax... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001900Ribonuclease II/RPFAMPF00773RNBcoord: 2..101
e-value: 2.9E-29
score: 102.4
NoneNo IPR availablePANTHERPTHR23355RIBONUCLEASEcoord: 4..102
NoneNo IPR availablePANTHERPTHR23355:SF42EXORIBONUCLEASE II, MITOCHONDRIALcoord: 4..102
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 1..101

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53482contigH-elongata_contig53482:2149..3133 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53482.12691.1mRNA_H-elongata_contig53482.12691.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig53482 2149..3133 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig53482.12691.1 ID=prot_H-elongata_contig53482.12691.1|Name=mRNA_H-elongata_contig53482.12691.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
TRKVDDGLSVETLPNGGEMVWVHIADVSRWVPEGSPLYQESRARRTTSYL
PEGSVPMFPAEVAHGVLSLRAGKECYALSMGIALGENGEITDVRVTPSLV
KVF*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001900RNase_II/R
IPR012340NA-bd_OB-fold