prot_H-elongata_contig52054.12491.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig52054.12491.1
Unique Nameprot_H-elongata_contig52054.12491.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length127
Homology
BLAST of mRNA_H-elongata_contig52054.12491.1 vs. uniprot
Match: A0A6H5KTC2_9PHAE (Ribosomal_L28e domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTC2_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 3.430e-35
Identity = 67/84 (79.76%), Postives = 72/84 (85.71%), Query Frame = 0
Query:   11 KRSGKIVLSAEPNNLMNKNSFKYSGLANSKAVGIQFDEDVKGRPCAAICLKSSKNTKKPNKSVGKSLLKKTFPSVSQAIKKQVG 94
            KRSGK+VL+AEPNNL N NS+KYSGLANSKAVGIQF +D K RPCAAI LKSSKN  KP KSVG+SLLKKT PSVSQAI KQ G
Sbjct:   28 KRSGKVVLTAEPNNLTNVNSYKYSGLANSKAVGIQFAKDPKDRPCAAITLKSSKNGNKPKKSVGRSLLKKTHPSVSQAIMKQTG 111          
BLAST of mRNA_H-elongata_contig52054.12491.1 vs. uniprot
Match: A0A836CDH5_9STRA (Putative 60S ribosomal protein L28 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDH5_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 3.270e-19
Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = 0
Query:   11 KRSGKIVLSAEPNNLMNKNSFKYSGLANSKAVGIQFDEDVKGRPCAAICLKSSKNTKKPNKSVGKSLLKKTFPSVSQAIK 90
            +RSG++VLS EP NL N +SFKYSGLANSKAVGI    D KGRPC  +  KSSK   +P K+V ++LLKK   S ++A+K
Sbjct:   28 RRSGRVVLSGEPMNLKNVHSFKYSGLANSKAVGIAEGADDKGRPCVVLTQKSSKKVNQPAKAVAQTLLKKNNRSSARAVK 107          
BLAST of mRNA_H-elongata_contig52054.12491.1 vs. uniprot
Match: A0A7S2DNV5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DNV5_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.370e-12
Identity = 45/87 (51.72%), Postives = 54/87 (62.07%), Query Frame = 0
Query:   11 KRSGKIVLSAEPNNLMNKNSFKYSGLANSKAVGIQF-----DEDVKGRPCAAICLKSSKNTKKPNKSVGKSLLKKTFPSVSQAIKKQ 92
            KRSG IVLS+EP NL N N+FKYSGLANSKA+   F     D+D K +   ++ LK SKN K+PNK      L K F  V + IK Q
Sbjct:   28 KRSGMIVLSSEPGNLRNINAFKYSGLANSKAIRFDFKEEGEDDDKKIK--MSMGLKISKNGKRPNKQYSTIPLNKDFRRVEKCIKAQ 112          
BLAST of mRNA_H-elongata_contig52054.12491.1 vs. uniprot
Match: A0A7J7L6F9_9MAGN (Ribosomal_L28e domain-containing protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7L6F9_9MAGN)

HSP 1 Score: 61.6 bits (148), Expect = 2.010e-9
Identity = 39/93 (41.94%), Postives = 55/93 (59.14%), Query Frame = 0
Query:    3 SFFIRTVMKRSGKIVLSAEPNNLMNKNSFKYSGLANSKAVGIQFDEDVKGRPCAAICLKS-SKNTKKPNKSVGKSLLKKTFPSVSQAIKKQVG 94
            SF I+     S  +  S E NNL N NSFK+SGLAN+K V IQ     +G+  A +   + +K   +P K V KS++KK F  +++A+K QVG
Sbjct:   18 SFLIKEFGNGSQMVQFSKETNNLYNLNSFKHSGLANTKTVSIQ----AEGKDQAVVLATTKTKKQNQPGKLVHKSVMKKEFRRMAKAVKNQVG 106          
BLAST of mRNA_H-elongata_contig52054.12491.1 vs. uniprot
Match: A0A2R6XUG7_MARPO (Ribosomal_L28e domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XUG7_MARPO)

HSP 1 Score: 59.7 bits (143), Expect = 1.080e-8
Identity = 36/93 (38.71%), Postives = 55/93 (59.14%), Query Frame = 0
Query:    3 SFFIRTVMKRSGKIVLSAEPNNLMNKNSFKYSGLANSKAVGIQFDEDVKGRPCAAICLKSSKNTK--KPNKSVGKSLLKKTFPSVSQAIKKQV 93
            SF ++     +  +  S+EPNNL NKN+FKYSGLAN K V I     V      ++ L ++K  K  KP +S+ +S+LK+ F  +++A+  QV
Sbjct:   19 SFLVKQNGNNNRSVQFSSEPNNLYNKNTFKYSGLANKKTVSI-----VPAGEGLSVTLATTKTKKGNKPAESINRSVLKRDFRKMARAVVNQV 106          
BLAST of mRNA_H-elongata_contig52054.12491.1 vs. uniprot
Match: A0A6A1W052_9ROSI (60S ribosomal protein L28-1 n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1W052_9ROSI)

HSP 1 Score: 59.7 bits (143), Expect = 1.100e-8
Identity = 46/124 (37.10%), Postives = 68/124 (54.84%), Query Frame = 0
Query:    3 SFFIRTVMKRSGKIVLSAEPNNLMNKNSFKYSGLANSKAVGIQFDEDVKGRPCAAICLKSSKNTKKPNKSVG---KSLLKKTFPSVSQAIKKQVGFVACRIFYSRFPCYRLSQ-HTLVRLSPGG 122
            SF ++   + +  +  S EPNNL N N++K+SGLAN K V IQ     +G+   ++ L ++K TKK NK V    KS++KK FP ++ A+  QV     R    +    RLS  H  +R+S  G
Sbjct:   18 SFLVKQFGRGTASVQFSKEPNNLYNLNTYKHSGLANKKTVTIQ----AEGKD-QSVLLATTK-TKKQNKPVALLHKSVMKKEFPRMANAVANQVADNYYRPDLKKAALARLSAVHRSLRVSKSG 135          
BLAST of mRNA_H-elongata_contig52054.12491.1 vs. uniprot
Match: UPI00053C76AA (60S ribosomal protein L28-2-like n=3 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C76AA)

HSP 1 Score: 59.3 bits (142), Expect = 1.480e-8
Identity = 45/123 (36.59%), Postives = 68/123 (55.28%), Query Frame = 0
Query:    3 SFFIRTVMKRSGKIVLSAEPNNLMNKNSFKYSGLANSKAVGIQFDEDVKGRPCAAICLKSSKNTK--KPNKSVGKSLLKKTFPSVSQAIKKQVGFVACRIFYSRFPCYRLSQ-HTLVRLSPGG 122
            SF ++   + S  +  S E NNL N NS+K+SGLANSK V IQ     +G+  A++ L ++K  K  KP   + KS++KK F  +++A+  QVG    R    R    RLS  H  ++++  G
Sbjct:   18 SFLVKQFGRGSAGVQFSKESNNLYNLNSYKHSGLANSKTVTIQ----PEGKD-ASVLLATTKTKKQNKPASVLNKSVMKKEFQRMAKAVTNQVGDNHYRPDLKRAALARLSVVHRSIKITKSG 135          
BLAST of mRNA_H-elongata_contig52054.12491.1 vs. uniprot
Match: A0A445CFG7_ARAHY (Ribosomal_L28e domain-containing protein n=3 Tax=Arachis TaxID=3817 RepID=A0A445CFG7_ARAHY)

HSP 1 Score: 59.7 bits (143), Expect = 1.650e-8
Identity = 41/93 (44.09%), Postives = 56/93 (60.22%), Query Frame = 0
Query:    4 FFIRTVMKRSGKIVLSAEPNNLMNKNSFKYSGLANSKAVGIQFDEDVKGRPCAAICLKSSKNTKKPNKSVG---KSLLKKTFPSVSQAIKKQV 93
            F ++   + +  +  S E NNL N NSFKYSGLAN K V IQ      G+   A+ L ++K TKK NK      KS++KK FP +++A+KKQV
Sbjct:   42 FLVKEFGRGTQSVEFSREANNLYNLNSFKYSGLANKKTVTIQ----PAGKD-QAVLLATTK-TKKQNKPAALLHKSIMKKEFPRMAKAVKKQV 128          
BLAST of mRNA_H-elongata_contig52054.12491.1 vs. uniprot
Match: A0A453GPK8_AEGTS (Ribosomal_L28e domain-containing protein n=9 Tax=Triticinae TaxID=1648030 RepID=A0A453GPK8_AEGTS)

HSP 1 Score: 59.7 bits (143), Expect = 2.140e-8
Identity = 36/101 (35.64%), Postives = 56/101 (55.45%), Query Frame = 0
Query:    4 FFIRTVMKRSGKIVLSAEPNNLMNKNSFKYSGLANSKAVGIQ--FDEDVKGRPCAAICLKSSKNTKKPNKSVGKSLLKKTFPSVSQAIKKQVGFVACRIFY 102
            F I+     + K+  S EPNNL N  S+K+SGLANSK V +Q    ED        + +  +K    P K   K+L++K F  +++++K Q+  +AC IF+
Sbjct:   76 FLIKQFGNSNTKVQFSKEPNNLYNIQSYKFSGLANSKTVAVQPSAGEDK----AVVLSMTKTKKQNTPAKLQHKTLMRKEFRKMAKSVKNQICGMACLIFW 172          
BLAST of mRNA_H-elongata_contig52054.12491.1 vs. uniprot
Match: A0A6F9DRX3_9ASCI (60S ribosomal protein L28 n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DRX3_9ASCI)

HSP 1 Score: 57.8 bits (138), Expect = 3.720e-8
Identity = 35/87 (40.23%), Postives = 54/87 (62.07%), Query Frame = 0
Query:    9 VMKRSGKIVLSAEPNNLMNKNSFKYSGLANSKAVGIQFDEDVKGRPCAAICLKSSKNTKKPNKSVGKSLL----KKTFPSVSQAIKK 91
            +MKR+ K   + EPNNL NKNSF+++GL + K VG++  E+ KG     +  K  K+ KKP KS+ +  L    +K+  S+S+ I+K
Sbjct:   17 LMKRN-KTQFTKEPNNLKNKNSFRFNGLVHKKTVGVEAAENGKG---VILITKKPKSVKKPGKSLNRVTLSRGSRKSLQSISKTIRK 99          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52054.12491.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTC2_9PHAE3.430e-3579.76Ribosomal_L28e domain-containing protein n=2 Tax=E... [more]
A0A836CDH5_9STRA3.270e-1957.50Putative 60S ribosomal protein L28 n=1 Tax=Tribone... [more]
A0A7S2DNV5_9STRA1.370e-1251.72Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7J7L6F9_9MAGN2.010e-941.94Ribosomal_L28e domain-containing protein n=1 Tax=K... [more]
A0A2R6XUG7_MARPO1.080e-838.71Ribosomal_L28e domain-containing protein n=2 Tax=M... [more]
A0A6A1W052_9ROSI1.100e-837.1060S ribosomal protein L28-1 n=1 Tax=Morella rubra ... [more]
UPI00053C76AA1.480e-836.5960S ribosomal protein L28-2-like n=3 Tax=Tarenaya ... [more]
A0A445CFG7_ARAHY1.650e-844.09Ribosomal_L28e domain-containing protein n=3 Tax=A... [more]
A0A453GPK8_AEGTS2.140e-835.64Ribosomal_L28e domain-containing protein n=9 Tax=T... [more]
A0A6F9DRX3_9ASCI3.720e-840.2360S ribosomal protein L28 n=1 Tax=Phallusia mammil... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029004Ribosomal L28e/Mak16PFAMPF01778Ribosomal_L28ecoord: 3..93
e-value: 3.7E-18
score: 66.3
NoneNo IPR availableGENE3D3.30.390.110coord: 2..112
e-value: 1.2E-21
score: 79.3
IPR002672Ribosomal protein L28ePANTHERPTHR1054460S RIBOSOMAL PROTEIN L28coord: 3..96

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52054contigH-elongata_contig52054:1311..2328 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52054.12491.1mRNA_H-elongata_contig52054.12491.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig52054 2..4025 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig52054.12491.1 ID=prot_H-elongata_contig52054.12491.1|Name=mRNA_H-elongata_contig52054.12491.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
MTSFFIRTVMKRSGKIVLSAEPNNLMNKNSFKYSGLANSKAVGIQFDEDV
KGRPCAAICLKSSKNTKKPNKSVGKSLLKKTFPSVSQAIKKQVGFVACRI
FYSRFPCYRLSQHTLVRLSPGGADLT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029004L28e/Mak16
IPR002672Ribosomal_L28e