prot_H-elongata_contig50567.12306.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig50567.12306.1
Unique Nameprot_H-elongata_contig50567.12306.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length264
Homology
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BLAST of mRNA_H-elongata_contig50567.12306.1 vs. uniprot
Match: D7G8Y1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8Y1_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 1.120e-45
Identity = 86/189 (45.50%), Postives = 116/189 (61.38%), Query Frame = 0 
Query:   21 VSWEEHFKQLHARSPPHMGFLNANAWQRDSIVMRVVGYDGFQVLVVLFLVLLFEALFSFDPSGFNSVRASDAFLVSLVFGAACGVFAIVSAALIKGKLQRLLVRDLASLKVQHRAGQGRRGRLDRLVHEWEIKARDRDFQPACISYEWYNGARQKLPRWVPPALTR------PRALAMYGSLSFAFMIV 203
             SWE+ FK  H        FLNAN WQR++I  R+   DGF  L+ LF+VL+ E ++SFDPS F S    DAFL  LVFGA+CGVFAI S  +++ KLQRL+VRD+A+LKVQ   G+  R  LD L+  W+  +  R FQPACISY+WY+G       +    L++      PR+L  +  L+FA  ++
Sbjct:   17 ASWEDRFKDKHPE------FLNANLWQREAIETRINAQDGFLFLIGLFVVLMLENMWSFDPSTFTSETRLDAFLALLVFGASCGVFAIFSMTMVRLKLQRLMVRDIAALKVQQVTGRANRSLLDGLLARWKASSAQRQFQPACISYDWYHGGGMNTSSFPTKILSKNWNPSCPRSLVKFAVLAFAATVL 199
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50567.12306.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8Y1_ECTSI1.120e-4545.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..54
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 115..189
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 215..219
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 55..73
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 74..92
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 220..242
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 243..263
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 190..214
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 93..114
NoneNo IPR availableTMHMMTMhelixcoord: 189..211
NoneNo IPR availableTMHMMTMhelixcoord: 221..243
NoneNo IPR availableTMHMMTMhelixcoord: 55..77
NoneNo IPR availableTMHMMTMhelixcoord: 92..114

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50567contigH-elongata_contig50567:88..879 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50567.12306.1mRNA_H-elongata_contig50567.12306.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig50567 35..1462 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig50567.12306.1 ID=prot_H-elongata_contig50567.12306.1|Name=mRNA_H-elongata_contig50567.12306.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=264bp
MSTSNINNNNNAGTNLPSWGVSWEEHFKQLHARSPPHMGFLNANAWQRDS
IVMRVVGYDGFQVLVVLFLVLLFEALFSFDPSGFNSVRASDAFLVSLVFG
AACGVFAIVSAALIKGKLQRLLVRDLASLKVQHRAGQGRRGRLDRLVHEW
EIKARDRDFQPACISYEWYNGARQKLPRWVPPALTRPRALAMYGSLSFAF
MIVSFGVAVAIRIADSKGMGWSLGFFVLVGGAAILPVVLVVLSSREPRGL
SNDEGTPFEGVFF*
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