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Homology
BLAST of mRNA_H-elongata_contig50567.12306.1 vs. uniprot
Match: D7G8Y1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8Y1_ECTSI) HSP 1 Score: 161 bits (407), Expect = 1.230e-44 Identity = 86/189 (45.50%), Postives = 116/189 (61.38%), Query Frame = 2
Query: 260 VSWEEHFKQLHARSPPHMGFLNANAWQRDSIVMRVVGYDGFQVLVVLFLVLLFEALFSFDPSGFNSVRASDAFLVSLVFGAACGVFAIVSAALIKGKLQRLLVRDLASLKVQHRAGQGRRGRLDRLVHEWEIKARDRDFQPACISYEWYNGARQKLPRWVPPALTR------PRALAMYGSLSFAFMIV 808
SWE+ FK H FLNAN WQR++I R+ DGF L+ LF+VL+ E ++SFDPS F S DAFL LVFGA+CGVFAI S +++ KLQRL+VRD+A+LKVQ G+ R LD L+ W+ + R FQPACISY+WY+G + L++ PR+L + L+FA ++
Sbjct: 17 ASWEDRFKDKHPE------FLNANLWQREAIETRINAQDGFLFLIGLFVVLMLENMWSFDPSTFTSETRLDAFLALLVFGASCGVFAIFSMTMVRLKLQRLMVRDIAALKVQQVTGRANRSLLDGLLARWKASSAQRQFQPACISYDWYHGGGMNTSSFPTKILSKNWNPSCPRSLVKFAVLAFAATVL 199
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-15_004700.1 |
| Exons | 2 |
| Model size | 1044 |
| Cds size | 792 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930831.4148383-UTR-H-elongata_contig50567:34..87 | 1622930831.4148383-UTR-H-elongata_contig50567:34..87 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig50567 35..87 - |
| 1691679589.2480638-UTR-H-elongata_contig50567:34..87 | 1691679589.2480638-UTR-H-elongata_contig50567:34..87 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig50567 35..87 - |
| 1622930831.449964-UTR-H-elongata_contig50567:879..890 | 1622930831.449964-UTR-H-elongata_contig50567:879..890 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig50567 880..890 - |
| 1691679589.2713346-UTR-H-elongata_contig50567:879..890 | 1691679589.2713346-UTR-H-elongata_contig50567:879..890 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig50567 880..890 - |
| 1622930831.4702451-UTR-H-elongata_contig50567:1274..1462 | 1622930831.4702451-UTR-H-elongata_contig50567:1274..1462 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig50567 1275..1462 - |
| 1691679589.2818873-UTR-H-elongata_contig50567:1274..1462 | 1691679589.2818873-UTR-H-elongata_contig50567:1274..1462 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig50567 1275..1462 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930831.43174-CDS-H-elongata_contig50567:87..879 | 1622930831.43174-CDS-H-elongata_contig50567:87..879 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig50567 88..879 - |
| 1691679589.2556462-CDS-H-elongata_contig50567:87..879 | 1691679589.2556462-CDS-H-elongata_contig50567:87..879 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig50567 88..879 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig50567.12306.1 >prot_H-elongata_contig50567.12306.1 ID=prot_H-elongata_contig50567.12306.1|Name=mRNA_H-elongata_contig50567.12306.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=264bp
MSTSNINNNNNAGTNLPSWGVSWEEHFKQLHARSPPHMGFLNANAWQRDS
IVMRVVGYDGFQVLVVLFLVLLFEALFSFDPSGFNSVRASDAFLVSLVFG
AACGVFAIVSAALIKGKLQRLLVRDLASLKVQHRAGQGRRGRLDRLVHEW
EIKARDRDFQPACISYEWYNGARQKLPRWVPPALTRPRALAMYGSLSFAF
MIVSFGVAVAIRIADSKGMGWSLGFFVLVGGAAILPVVLVVLSSREPRGL
SNDEGTPFEGVFF* back to topmRNA from alignment at H-elongata_contig50567:35..1462- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig50567.12306.1 ID=mRNA_H-elongata_contig50567.12306.1|Name=mRNA_H-elongata_contig50567.12306.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1428bp|location=Sequence derived from alignment at H-elongata_contig50567:35..1462- (Himanthalia elongata Himel1 dioecious)
CAGGTTAAAAACGCGCGGGAGACGCAACAATATTTCGCCCCGTGTGACGC
GTACGACTTTGGCCACTACCACCCAACCCCAACTCCGGCACTTGCACGTA
CGAAACAACTGGCCCCAACGATGACATGCAGGAATTTCACGCCCCCCCCC
TGGTGTAGGCGAAGGGTCTGCTTTCCAAGCGCTCTAAGGTACACTTCCTC
AAGTAGTCTAAGCTTGAAAGTAGGTTTGCGGAGCTTCGAAAGCCTGTCGA
AATGCATGGACTGAGCCACACAAAGATCAATTCCGCGGTGGCCTTGGGCT
TCCCCAGGTCGATTACGGCCATCTCCACCGTCTGTCCCTGGCTCTTGTGT
ATCGTAATCGCCCAGCACATGGACTTCTTATCCGGAACTATTTCTGTTTT
TGCCATGGCGGGGGCATAATAGTTCGTACACCACGCCTCGATATTCTTGT
TTATTATTAATATCTCGAGGTTGTTCGCCCTGTATCCCACATACAGCATG
TTTTCCTGAGGAAGCTGTCCCCCACTCGCCGCAATACTTACTCTGCAAAA
TATTTCGTTTATATTTTATTAGGTTACATCAGGATGTCGACAAGCAACAT
CAACAACAACAACAACGCAGGTACCAACCTGCCTTCCTGGGGGGTGTCAT
GGGAAGAACATTTCAAGCAGCTGCACGCTAGGTCTCCTCCGCATATGGGA
TTCCTGAACGCCAACGCATGGCAGCGCGATTCTATCGTCATGAGGGTAGT
CGGATACGACGGCTTCCAGGTTCTGGTTGTTTTGTTCCTCGTTTTGTTGT
TCGAGGCCCTGTTTTCGTTTGACCCAAGCGGGTTCAATTCGGTACGTGCA
AGTGATGCATTCTTGGTCTCCCTCGTGTTCGGCGCTGCGTGTGGAGTTTT
CGCAATCGTTTCTGCTGCGTTGATCAAAGGAAAGCTCCAGCGCCTATTGG
TTCGCGATTTAGCTTCTCTAAAGGTGCAGCATCGAGCTGGGCAGGGGCGA
AGAGGGCGGCTTGACCGCCTGGTACACGAATGGGAAATTAAGGCACGAGA
TCGGGACTTTCAGCCGGCTTGTATCTCATATGAATGGTACAATGGCGCAA
GACAGAAGCTTCCCAGATGGGTCCCGCCGGCCCTGACTCGCCCGAGGGCG
CTTGCAATGTATGGATCACTTTCGTTCGCATTCATGATCGTGTCTTTCGG
TGTCGCTGTGGCAATCAGGATCGCCGACTCGAAAGGTATGGGGTGGAGTC
TGGGTTTCTTCGTCCTTGTCGGAGGGGCGGCGATTCTGCCGGTGGTTCTC
GTCGTTTTAAGTTCGCGGGAGCCTCGCGGGTTGAGCAACGATGAGGGAAC
CCCGTTTGAAGGAGTTTTTTTCTAACAGTGGAAAGACAGGTCAATCGGGA
ATAAAATGTTTTTTTCGGAGGATTGGAA back to topCoding sequence (CDS) from alignment at H-elongata_contig50567:35..1462- >mRNA_H-elongata_contig50567.12306.1 ID=mRNA_H-elongata_contig50567.12306.1|Name=mRNA_H-elongata_contig50567.12306.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1584bp|location=Sequence derived from alignment at H-elongata_contig50567:35..1462- (Himanthalia elongata Himel1 dioecious)
ATGTCGACAAGCAACATCAACAACAACAACAACGCAGGTACCAACCTGCC
TTCCTGGGGGGTGTCATGGGAAGAACATTTCAAGCAGCTGCACGCTAGGT
CTCCTCCGCATATGGGATTCCTGAACGCCAACGCATGGCAGCGCGATTCT
ATCGTCATGAGGGTAGTCGGATACGACGGCTTCCAGGTTCTGGTTGTTTT
GTTCCTCGTTTTGTTGTTCGAGGCCCTGTTTTCGTTTGACCCAAGCGGGT
TCAATTCGGTACGTGCAAGTGATGCATTCTTGGTCTCCCTCGTGTTCGGC
GCTGCGTGTGGAGTTTTCGCAATCGTTTCTGCTGCGTTGATCAAAGGAAA
GCTCCAGCGCCTATTGGTTCGCGATTTAGCTTCTCTAAAGGTGCAGCATC
GAGCTGGGCAGGGGCGAAGAGGGCGGCTTGACCGCCTGGTACACGAATGG
GAAATTAAGGCACGAGATCGGGACTTTCAGCCGGCTTGTATCTCATATGA
ATGGTACAATGGCGCAAGACAGAAGCTTCCCAGATGGGTCCCGCCGGCCC
TGACTCGCCCGAGGGCGCTTGCAATGTATGGATCACTTTCGTTCGCATTC
ATGATCGTGTCTTTCGGTGTCGCTGTGGCAATCAGGATCGCCGACTCGAA
AGGTATGGGGTGGAGTCTGGGTTTCTTCGTCCTTGTCGGAGGGGCGGCGA
TTCTGCCGGTGGTTCTCGTCGTTTTAAGTTCGCGGGAGCCTCGCGGGTTG
AGCAACGATGAGGGAACCCCGTTTGAAGGAGTTTTTTTCTAAATGTCGAC
AAGCAACATCAACAACAACAACAACGCAGGTACCAACCTGCCTTCCTGGG
GGGTGTCATGGGAAGAACATTTCAAGCAGCTGCACGCTAGGTCTCCTCCG
CATATGGGATTCCTGAACGCCAACGCATGGCAGCGCGATTCTATCGTCAT
GAGGGTAGTCGGATACGACGGCTTCCAGGTTCTGGTTGTTTTGTTCCTCG
TTTTGTTGTTCGAGGCCCTGTTTTCGTTTGACCCAAGCGGGTTCAATTCG
GTACGTGCAAGTGATGCATTCTTGGTCTCCCTCGTGTTCGGCGCTGCGTG
TGGAGTTTTCGCAATCGTTTCTGCTGCGTTGATCAAAGGAAAGCTCCAGC
GCCTATTGGTTCGCGATTTAGCTTCTCTAAAGGTGCAGCATCGAGCTGGG
CAGGGGCGAAGAGGGCGGCTTGACCGCCTGGTACACGAATGGGAAATTAA
GGCACGAGATCGGGACTTTCAGCCGGCTTGTATCTCATATGAATGGTACA
ATGGCGCAAGACAGAAGCTTCCCAGATGGGTCCCGCCGGCCCTGACTCGC
CCGAGGGCGCTTGCAATGTATGGATCACTTTCGTTCGCATTCATGATCGT
GTCTTTCGGTGTCGCTGTGGCAATCAGGATCGCCGACTCGAAAGGTATGG
GGTGGAGTCTGGGTTTCTTCGTCCTTGTCGGAGGGGCGGCGATTCTGCCG
GTGGTTCTCGTCGTTTTAAGTTCGCGGGAGCCTCGCGGGTTGAGCAACGA
TGAGGGAACCCCGTTTGAAGGAGTTTTTTTCTAA back to top
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