prot_H-elongata_contig5021.12247.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5021.12247.1
Unique Nameprot_H-elongata_contig5021.12247.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length360
Homology
[Close]
BLAST of mRNA_H-elongata_contig5021.12247.1 vs. uniprot
Match: A0A6H5L3H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H2_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 1.580e-49
Identity = 92/134 (68.66%), Postives = 109/134 (81.34%), Query Frame = 0 
Query:  189 KELPLCPFPGHTNVSWVCRACNGARHHLTSRAAMEPLKRAHGFKVHRVPNDGDCFYSSIKAAVEL-ECQKKIQKDAAMVGA-QEVTVAEMRAWVAEEMGEEQLAFYALQAKANPEDQWLDFVRPLDERIPSDEE 320
            ++LP CP+PGH NVSW CRAC GA+HHLTSR+AMEPL+RAHGFKVHRVPNDGDCF+SSIKAA+   E  +  +   A  GA   +TV +MR WVAEEMG++QL FY LQA ANPED+WLDFVRPL +RIPSD+E
Sbjct:  252 EQLPPCPYPGHQNVSWTCRACGGAKHHLTSRSAMEPLQRAHGFKVHRVPNDGDCFFSSIKAALPAAELARGDEGGGAAAGAGSALTVRQMREWVAEEMGQDQLDFYILQAGANPEDRWLDFVRPLVDRIPSDDE 385
[Close]
BLAST of mRNA_H-elongata_contig5021.12247.1 vs. uniprot
Match: D8LS81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS81_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 4.610e-28
Identity = 66/104 (63.46%), Postives = 77/104 (74.04%), Query Frame = 0 
Query:  222 MEPLKRAHGFKVHRVPNDGDCFYSSIKAAVE-----LECQKKIQKDAAMVGAQEVTVAEMRAWVAEEMGEEQLAFYALQAKANPEDQWLDFVRPLDERIPSDEE 320
            MEPL+RAHGFKVHRVPNDGDCF+SSIKAA+         +      AA      +TV +MR WVAEEMG++QL FY LQA ANPED+WLDFVRPL +RIPSD+E
Sbjct:    1 MEPLQRAHGFKVHRVPNDGDCFFSSIKAALPDGVAAERARGGXXXXAADCAGSALTVRQMREWVAEEMGQDQLDFYILQAGANPEDRWLDFVRPLVDRIPSDDE 104
[Close]
BLAST of mRNA_H-elongata_contig5021.12247.1 vs. uniprot
Match: A0A836CA53_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA53_9STRA)

HSP 1 Score: 110 bits (274), Expect = 8.520e-24
Identity = 58/115 (50.43%), Postives = 73/115 (63.48%), Query Frame = 0 
Query:  195 PFPGHTNVSWVCRACNGARHHLTSRAAMEPLKRAHGFKVHRVPNDGDCFYSSIKAAVELECQKKIQKDAAMVGAQEVTVAEMRAWVAEEMGEEQLAFYALQAKANPEDQWLDFVR 309
            P+P HT+V W+C AC    H LTS+ A+ P ++AHGFKV+ VP DGDCFYSS+  A+            A VG +  TVA++R WVA  M EE L FY + A+ANP   WLDFVR
Sbjct:   47 PYPCHTDVVWMCEAC-AVEHCLTSKQALAPFRKAHGFKVYAVPKDGDCFYSSVCMAL------------ASVGVR-ATVAQLREWVAASMTEEHLRFYQVHAEANPSASWLDFVR 147
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5021.12247.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L3H2_9PHAE1.580e-4968.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS81_ECTSI4.610e-2863.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CA53_9STRA8.520e-2450.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5021contigH-elongata_contig5021:932..5093 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5021.12247.1mRNA_H-elongata_contig5021.12247.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5021 932..5095 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5021.12247.1 ID=prot_H-elongata_contig5021.12247.1|Name=mRNA_H-elongata_contig5021.12247.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=360bp
GDGANNFVKAGSAVSLSEKSLGGLEGNDPPIEKIIEMVVTKCTNQPQRDG
RDDRDASPSESPKAPKSAVALKGDAGGAAGDTALGPTATKPLSQKVVKPI
IVPVTAEGTGFFVTSALGDDTREAGNKPVGDESPLARADSFTKEKHALKQ
GKKTLKENIVSPRSLEVSTATRNPEDLQQLEKQRGEVLKELPLCPFPGHT
NVSWVCRACNGARHHLTSRAAMEPLKRAHGFKVHRVPNDGDCFYSSIKAA
VELECQKKIQKDAAMVGAQEVTVAEMRAWVAEEMGEEQLAFYALQAKANP
EDQWLDFVRPLDERIPSDEEGENEEAEEEEAKTSKRFAAKASRQSRERAV
NMDEAGGPRG
back to top