mRNA_H-elongata_contig5021.12247.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5021.12247.1
Unique NamemRNA_H-elongata_contig5021.12247.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5021.12247.1 vs. uniprot
Match: A0A6H5L3H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H2_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 1.580e-49
Identity = 92/134 (68.66%), Postives = 109/134 (81.34%), Query Frame = 1 
Query:  565 KELPLCPFPGHTNVSWVCRACNGARHHLTSRAAMEPLKRAHGFKVHRVPNDGDCFYSSIKAAVEL-ECQKKIQKDAAMVGA-QEVTVAEMRAWVAEEMGEEQLAFYALQAKANPEDQWLDFVRPLDERIPSDEE 960
            ++LP CP+PGH NVSW CRAC GA+HHLTSR+AMEPL+RAHGFKVHRVPNDGDCF+SSIKAA+   E  +  +   A  GA   +TV +MR WVAEEMG++QL FY LQA ANPED+WLDFVRPL +RIPSD+E
Sbjct:  252 EQLPPCPYPGHQNVSWTCRACGGAKHHLTSRSAMEPLQRAHGFKVHRVPNDGDCFFSSIKAALPAAELARGDEGGGAAAGAGSALTVRQMREWVAEEMGQDQLDFYILQAGANPEDRWLDFVRPLVDRIPSDDE 385
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BLAST of mRNA_H-elongata_contig5021.12247.1 vs. uniprot
Match: D8LS81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS81_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 4.610e-28
Identity = 66/104 (63.46%), Postives = 77/104 (74.04%), Query Frame = 1 
Query:  664 MEPLKRAHGFKVHRVPNDGDCFYSSIKAAVE-----LECQKKIQKDAAMVGAQEVTVAEMRAWVAEEMGEEQLAFYALQAKANPEDQWLDFVRPLDERIPSDEE 960
            MEPL+RAHGFKVHRVPNDGDCF+SSIKAA+         +      AA      +TV +MR WVAEEMG++QL FY LQA ANPED+WLDFVRPL +RIPSD+E
Sbjct:    1 MEPLQRAHGFKVHRVPNDGDCFFSSIKAALPDGVAAERARGGXXXXAADCAGSALTVRQMREWVAEEMGQDQLDFYILQAGANPEDRWLDFVRPLVDRIPSDDE 104
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BLAST of mRNA_H-elongata_contig5021.12247.1 vs. uniprot
Match: A0A836CA53_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA53_9STRA)

HSP 1 Score: 110 bits (274), Expect = 8.520e-24
Identity = 58/115 (50.43%), Postives = 73/115 (63.48%), Query Frame = 1 
Query:  583 PFPGHTNVSWVCRACNGARHHLTSRAAMEPLKRAHGFKVHRVPNDGDCFYSSIKAAVELECQKKIQKDAAMVGAQEVTVAEMRAWVAEEMGEEQLAFYALQAKANPEDQWLDFVR 927
            P+P HT+V W+C AC    H LTS+ A+ P ++AHGFKV+ VP DGDCFYSS+  A+            A VG +  TVA++R WVA  M EE L FY + A+ANP   WLDFVR
Sbjct:   47 PYPCHTDVVWMCEAC-AVEHCLTSKQALAPFRKAHGFKVYAVPKDGDCFYSSVCMAL------------ASVGVR-ATVAQLREWVAASMTEEHLRFYQVHAEANPSASWLDFVR 147
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5021.12247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L3H2_9PHAE1.580e-4968.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS81_ECTSI4.610e-2863.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CA53_9STRA8.520e-2450.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5021contigH-elongata_contig5021:932..5095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1082
Cds size1080
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5021.12247.1prot_H-elongata_contig5021.12247.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5021 932..5093 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930825.7740533-CDS-H-elongata_contig5021:931..16271622930825.7740533-CDS-H-elongata_contig5021:931..1627Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5021 932..1627 +
1691679586.8499753-CDS-H-elongata_contig5021:931..16271691679586.8499753-CDS-H-elongata_contig5021:931..1627Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5021 932..1627 +
1622930825.785878-CDS-H-elongata_contig5021:4553..47681622930825.785878-CDS-H-elongata_contig5021:4553..4768Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5021 4554..4768 +
1691679586.8601594-CDS-H-elongata_contig5021:4553..47681691679586.8601594-CDS-H-elongata_contig5021:4553..4768Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5021 4554..4768 +
1622930825.8058639-CDS-H-elongata_contig5021:4924..50931622930825.8058639-CDS-H-elongata_contig5021:4924..5093Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5021 4925..5093 +
1691679586.8725398-CDS-H-elongata_contig5021:4924..50931691679586.8725398-CDS-H-elongata_contig5021:4924..5093Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5021 4925..5093 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5021.12247.1

>prot_H-elongata_contig5021.12247.1 ID=prot_H-elongata_contig5021.12247.1|Name=mRNA_H-elongata_contig5021.12247.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=360bp
GDGANNFVKAGSAVSLSEKSLGGLEGNDPPIEKIIEMVVTKCTNQPQRDG
RDDRDASPSESPKAPKSAVALKGDAGGAAGDTALGPTATKPLSQKVVKPI
IVPVTAEGTGFFVTSALGDDTREAGNKPVGDESPLARADSFTKEKHALKQ
GKKTLKENIVSPRSLEVSTATRNPEDLQQLEKQRGEVLKELPLCPFPGHT
NVSWVCRACNGARHHLTSRAAMEPLKRAHGFKVHRVPNDGDCFYSSIKAA
VELECQKKIQKDAAMVGAQEVTVAEMRAWVAEEMGEEQLAFYALQAKANP
EDQWLDFVRPLDERIPSDEEGENEEAEEEEAKTSKRFAAKASRQSRERAV
NMDEAGGPRG
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mRNA from alignment at H-elongata_contig5021:932..5095+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5021.12247.1 ID=mRNA_H-elongata_contig5021.12247.1|Name=mRNA_H-elongata_contig5021.12247.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4164bp|location=Sequence derived from alignment at H-elongata_contig5021:932..5095+ (Himanthalia elongata Himel1 dioecious)
GGTGACGGCGCGAACAATTTTGTAAAAGCAGGCAGCGCCGTATCGTTGAG
TGAGAAAAGCTTGGGGGGGCTCGAGGGGAACGATCCACCGATCGAAAAAA
TCATCGAAATGGTCGTAACGAAGTGCACGAATCAGCCGCAGCGCGATGGC
CGCGACGATCGCGATGCCAGCCCGTCCGAGTCACCAAAGGCGCCGAAATC
TGCCGTGGCATTGAAAGGGGACGCAGGAGGGGCAGCCGGCGACACGGCTC
TAGGACCAACTGCGACGAAGCCATTGAGCCAAAAGGTTGTGAAACCGATA
ATTGTTCCAGTGACAGCGGAAGGAACAGGTTTCTTCGTTACTAGCGCTCT
TGGCGATGATACGAGGGAAGCCGGAAACAAGCCGGTCGGCGACGAATCGC
CACTTGCCAGAGCAGACTCATTCACCAAGGAGAAGCATGCTCTCAAACAG
GGGAAAAAAACTCTGAAAGAAAATATTGTATCGCCGCGAAGTCTCGAGGT
TTCGACAGCAACAAGGAACCCGGAAGATTTGCAACAATTAGAGAAGCAGA
GGGGGGAGGTGTTGAAGGAGCTCCCTCTCTGCCCTTTTCCAGGACACACT
AACGTTTCGTGGGTGTGTCGGGCGTGCAATGGAGCCAGACACCACCTGAC
GTCGCGCGCAGCCATGGAGCCGCTGAAAAGAGCACACGGCTTTAAGGTGA
GAATCTCTTTGTTTCTATCTTATGCCAGCGTTACGAAATGAAATGTTTTA
TCTAGACTTAATCCCGTAAGGGGGTCGCTGCAATATTTTGGGTTAAGGTC
TAGAGCCCAGTCAGGATGAAACAACTGCTGCTTCGTCGTTCACTAGGATC
GGGCCGGGATAAAGGGCCGTCAGTCGGCATTGCTACTGCCGAAGAATGTT
AGTGCCTGCACCTATCAGGATGTTTTGCCAGTAAAACTTTACAGCTGGGG
CGCTTCGCCTCTCAATTTCAACCATGACATACCATGCCATGCAGCGAAGC
CATCAAACTTACTAAACCGTCCCACTTTCGCACACACAAATTGCACACAC
GCACTCTCACACACTTAATAGCGCACACGGGCATGTATACTAGTGTTGTG
TATCAACCAAAAAAACATGGTTGATTCTTGATGAAAAGTTGGTTTGATTT
CACATCAACTCAACTTTCTGTTGATTAGTTGATTAATCAACTAATCAACA
TAAACTTATATAAGCTTGATTAGTTGATTATTTCCAGAAGAAGAGGCGTT
TGCGTCGTGTAACGTCATTTTTTCTGCCTTCGGCGCGACCAAACAAAACG
AAAGATGGATCTTGTATCTTGTCAAGACGACGACACATGGCACACGACAG
ATAGATAAACACAGTAGCCCACAACAGACATCACGCCATACAGCACAAAA
GTTCCGTAATACGCTCAGGCTTACACACTTAACACGCAACTCGACACCAT
GAGTAACGCCGCGGTAACTAGCGGTGCAAGTGATAGCGGTGCAAGTGATG
ACGTCACGCGCCGCCGAAAGTGACACAGAAGAGGATTCTCCCCCACGTGA
CGTCATTACTGAACTTGATGAAAATACAGCTGATGTTGTTGTGTCGGTGA
CAAACTCTGCCCCGGAAGATGATGAAGACGACAATGATGGTTAATATTCA
GAAAGGACAGCCAAGGCGCAGTCCCTGTCCAGTCAAGAGTTTATGCATAA
CAGATGGAAGCAGCCTACCCAAGAAAATTCCCCCATCTGGAAGTTTTTTC
TGCAAGGTGTGGGTGAAGGGCGCAAGGACAAGGCTTTGTGTAAAGTGCCC
GGCTGTAGCAACGACGTCAGCACCAAGGCGACGCCCATCTTGAAACAGCA
CATGAATAACAAAACACAAAAAACACACCCCATACGTCGAATTTGCCATC
CAAAGGGCACTTCAGAAAGAGGGGGAAGTCACAAACTCGAAAGGGAAAAT
TGAAAACTTCTTTGCGACAACGCTAGCTCGAAAGTATCTTGCTGTTCAAG
CTTCATCTGCTGCGTCGGAACGAGTTTTCTCTGTGGGCGGACTCGTAGTC
ACAAAAAAGCGAAACCGTCTTTCCGGAGATCGGGTAGCAGACATTGTTTT
CCTTCACGAGAGCATGAAACACGACCTCTGGTAGAGTAATGCTGCGGTGC
TATGGAACATTATGTATTGGTGCTGTTCTGTAAAGAGTAGGATGGATGTC
TTCAAATGCTGCTTGCACGACACCCAAGGGAAATAATCTCTAGAATGCAC
ACATTATGCACATCATAAGAGATACGATGGTCTATCATACAGAACATATA
CGGTTATAATGGGGGTTTTTGGTGGGTAGTGGGTACATACAGCAGTAGAT
GGTACTCACCACGTATCGTTTATTTATCAGTCGCACCCCCAGCGTCAAAT
ATATCGACACAAGTTTTAATGAGGAACATATACCACATACGAGTAGATAA
TATGCATACAAAGGCACAAAGCAGTGCGCTTAGTTAGGTAGACGGATTGC
TATTATTACGTGTTACAGGGAGGAGCAGAACTTACCTGCGCATGTTAAGC
TAATTAAAGTATCACATCGACACGGAGGGTAATACTGGTACATACTCTGG
TGCGACTGTAATTATAATCAGCACATGCTGCGGGCGTGCGCGTGGGCAGT
GAATTGATTCATCATGAAATATGAGCTCATTGGGGCATATCTCCTGCTTG
AAAAAATCCAAAAACTCAACTAATCATGGTAAGTTGATTTGATTCCCGAT
CAGTTGATAAGTTGATTAATCGTGAGTAAATCAAGCCGATTTGGACCAAA
ATTAAGTTGATGCACAACACTAATGTATATCCATATATACACAAATATAC
ACACATTATAAATTATATGTAAACATCGCGCATATACGTATATTTGCACA
TATCCACACATAGTCGTCGCTCAAGGAGTCTTATGGTAACCATGCCATTG
ATGCAGAAATCATGAGCTCGAATCCCACTATGATTGGTTCGATTGGTTCA
AAAGCGGAAAACGTAAGAGTTTGAGTAAGCAACTTTCAGCCAGTGTGTGT
CTGTGTTTGTGATCGTCACATATAGCATATTATGGCTTGATCGGATATGG
CTGCCAATCCTGCTCGTGGGTGTCCCCGTTCGCATCTAGTTGAAGACGAG
ATGTAGGAGTAATACTGAACTTGCATCGCCATAAAAATTATAGGGCTGTG
CCAGGGGGAGAGAGAAAGAGAGATGGGATGCTCCCTTAGAACCACACGCG
GGATGGGTGACATTGCAGTAGGTGTGATTAGGAACCTACCACGTTGAATA
GCCATTATATACCCTATTGTCATAACCTCATTATAGGAACCATTCTATGA
GCCATCGTCAGAAAGTTATATGAGAAAAAAACGCACGCACATACACACAC
AACAAGCGAGTACTCGCAAGCTTTTGGAAATGCGAATGTGAAAGTGTCGA
ATGGAAAAATTTCACTCCTCCGAATGAGACAAGCGCAGTCGCAATGAAAC
TCTCGCACACGGCAATGGGGACGTCGGGCAGCCCTTTGCCACGAGCGTAG
TTGTATTGAGAATCCGAAGAGGAAACCCGTAAGCCTCGAAGCCCTGCCGT
TGAAACACGTCCATGCGCATAGGTGCACCGCGTCCCGAACGACGGTGACT
GCTTCTACTCGTCTATAAAAGCTGCTGTAGAGCTGGAGTGCCAGAAGAAA
ATACAAAAAGACGCCGCGATGGTGGGGGCACAGGAGGTGACCGTGGCGGA
GATGCGCGCGTGGGTAGCGGAGGAAATGGGGGAAGAGCAGCTTGCTTTCT
ATGCGCTCCAGGCCAAGGCGAACCCTGAAGACCAATGGTGAGGACCGTTT
CGGGTCCCAACCGTTTCTTGAACGCACATTTTTACCACCACTTTATCTCG
CACGCTGTCGTGTAATACTTGCTGTCCTCTTGACTATCCGTAGCATCGCT
CACCAGGAAAACCGTGGCGTGCTTCACGACCGTCTGTCATCAGGTTGGAT
TTCGTCAGGCCCCTGGACGAACGGATACCGAGTGATGAAGAAGGGGAAAA
TGAAGAGGCAGAGGAAGAAGAGGCAAAAACTTCAAAGCGCTTTGCGGCAA
AAGCTTCCAGGCAGTCTCGCGAGCGGGCGGTGAATATGGACGAAGCGGGT
GGCCCGCGTGGCGG
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Coding sequence (CDS) from alignment at H-elongata_contig5021:932..5095+

>mRNA_H-elongata_contig5021.12247.1 ID=mRNA_H-elongata_contig5021.12247.1|Name=mRNA_H-elongata_contig5021.12247.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2160bp|location=Sequence derived from alignment at H-elongata_contig5021:932..5095+ (Himanthalia elongata Himel1 dioecious)
GGTGACGGCGCGAACAATTTTGTAAAAGCAGGCAGCGCCGTATCGTTGAG
TGAGAAAAGCTTGGGGGGGCTCGAGGGGAACGATCCACCGATCGAAAAAA
TCATCGAAATGGTCGTAACGAAGTGCACGAATCAGCCGCAGCGCGATGGC
CGCGACGATCGCGATGCCAGCCCGTCCGAGTCACCAAAGGCGCCGAAATC
TGCCGTGGCATTGAAAGGGGACGCAGGAGGGGCAGCCGGCGACACGGCTC
TAGGACCAACTGCGACGAAGCCATTGAGCCAAAAGGTTGTGAAACCGATA
ATTGTTCCAGTGACAGCGGAAGGAACAGGTTTCTTCGTTACTAGCGCTCT
TGGCGATGATACGAGGGAAGCCGGAAACAAGCCGGTCGGCGACGAATCGC
CACTTGCCAGAGCAGACTCATTCACCAAGGAGAAGCATGCTCTCAAACAG
GGGAAAAAAACTCTGAAAGAAAATATTGTATCGCCGCGAAGTCTCGAGGT
TTCGACAGCAACAAGGAACCCGGAAGATTTGCAACAATTAGAGAAGCAGA
GGGGGGAGGTGTTGAAGGAGCTCCCTCTCTGCCCTTTTCCAGGACACACT
AACGTTTCGTGGGTGTGTCGGGCGTGCAATGGAGCCAGACACCACCTGAC
GTCGCGCGCAGCCATGGAGCCGCTGAAAAGAGCACACGGCTTTAAGGGTG
ACGGCGCGAACAATTTTGTAAAAGCAGGCAGCGCCGTATCGTTGAGTGAG
AAAAGCTTGGGGGGGCTCGAGGGGAACGATCCACCGATCGAAAAAATCAT
CGAAATGGTCGTAACGAAGTGCACGAATCAGCCGCAGCGCGATGGCCGCG
ACGATCGCGATGCCAGCCCGTCCGAGTCACCAAAGGCGCCGAAATCTGCC
GTGGCATTGAAAGGGGACGCAGGAGGGGCAGCCGGCGACACGGCTCTAGG
ACCAACTGCGACGAAGCCATTGAGCCAAAAGGTTGTGAAACCGATAATTG
TTCCAGTGACAGCGGAAGGAACAGGTTTCTTCGTTACTAGCGCTCTTGGC
GATGATACGAGGGAAGCCGGAAACAAGCCGGTCGGCGACGAATCGCCACT
TGCCAGAGCAGACTCATTCACCAAGGAGAAGCATGCTCTCAAACAGGGGA
AAAAAACTCTGAAAGAAAATATTGTATCGCCGCGAAGTCTCGAGGTTTCG
ACAGCAACAAGGAACCCGGAAGATTTGCAACAATTAGAGAAGCAGAGGGG
GGAGGTGTTGAAGGAGCTCCCTCTCTGCCCTTTTCCAGGACACACTAACG
TTTCGTGGGTGTGTCGGGCGTGCAATGGAGCCAGACACCACCTGACGTCG
CGCGCAGCCATGGAGCCGCTGAAAAGAGCACACGGCTTTAAGGTGCACCG
CGTCCCGAACGACGGTGACTGCTTCTACTCGTCTATAAAAGCTGCTGTAG
AGCTGGAGTGCCAGAAGAAAATACAAAAAGACGCCGCGATGGTGGGGGCA
CAGGAGGTGACCGTGGCGGAGATGCGCGCGTGGGTAGCGGAGGAAATGGG
GGAAGAGCAGCTTGCTTTCTATGCGCTCCAGGCCAAGGCGAACCCTGAAG
ACCAATGGTGCACCGCGTCCCGAACGACGGTGACTGCTTCTACTCGTCTA
TAAAAGCTGCTGTAGAGCTGGAGTGCCAGAAGAAAATACAAAAAGACGCC
GCGATGGTGGGGGCACAGGAGGTGACCGTGGCGGAGATGCGCGCGTGGGT
AGCGGAGGAAATGGGGGAAGAGCAGCTTGCTTTCTATGCGCTCCAGGCCA
AGGCGAACCCTGAAGACCAATGGTTGGATTTCGTCAGGCCCCTGGACGAA
CGGATACCGAGTGATGAAGAAGGGGAAAATGAAGAGGCAGAGGAAGAAGA
GGCAAAAACTTCAAAGCGCTTTGCGGCAAAAGCTTCCAGGCAGTCTCGCG
AGCGGGCGGTGAATATGGACGAAGCGGGTGGCCCGCGTGGCGTTGGATTT
CGTCAGGCCCCTGGACGAACGGATACCGAGTGATGAAGAAGGGGAAAATG
AAGAGGCAGAGGAAGAAGAGGCAAAAACTTCAAAGCGCTTTGCGGCAAAA
GCTTCCAGGCAGTCTCGCGAGCGGGCGGTGAATATGGACGAAGCGGGTGG
CCCGCGTGGC
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