prot_H-elongata_contig5002.12224.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5002.12224.1
Unique Nameprot_H-elongata_contig5002.12224.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length74
Homology
BLAST of mRNA_H-elongata_contig5002.12224.1 vs. uniprot
Match: A0A699RE47_TANCI (Putative RNA-directed DNA polymerase (Fragment) n=2 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699RE47_TANCI)

HSP 1 Score: 69.7 bits (169), Expect = 1.260e-13
Identity = 30/71 (42.25%), Postives = 47/71 (66.20%), Query Frame = 0
Query:    3 IPKGANIVSGRWGRSWKTNEHGNVLKPKPLMVARGCSQEYGVEYLKVFAQKSLTSSVKLVVGVAVENGWEL 73
            +PKG + V  RW    K N  G+V + K  +VA+GC+Q+YGV+Y + FA  +  ++V++V+ VA+ NGW L
Sbjct:   19 LPKGKHAVGSRWVFKTKFNSDGSVDRYKACLVAQGCTQQYGVDYKETFAPVAKMTTVRVVLSVAINNGWPL 89          
BLAST of mRNA_H-elongata_contig5002.12224.1 vs. uniprot
Match: A0A4Y1RRK6_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RRK6_PRUDU)

HSP 1 Score: 67.0 bits (162), Expect = 6.550e-13
Identity = 29/72 (40.28%), Postives = 46/72 (63.89%), Query Frame = 0
Query:    2 DIPKGANIVSGRWGRSWKTNEHGNVLKPKPLMVARGCSQEYGVEYLKVFAQKSLTSSVKLVVGVAVENGWEL 73
            D+PKG   V  +W    K NE G V K K  +VA+G +QE+G++Y +VFA  +   +++LVV +A +N W++
Sbjct:   18 DLPKGEKTVGVKWIYKTKLNEKGEVDKYKARLVAKGYTQEHGIDYAEVFAPVARLDTIRLVVSLAAQNSWQI 89          
BLAST of mRNA_H-elongata_contig5002.12224.1 vs. uniprot
Match: A0A438HG45_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HG45_VITVI)

HSP 1 Score: 67.4 bits (163), Expect = 2.210e-11
Identity = 27/70 (38.57%), Postives = 45/70 (64.29%), Query Frame = 0
Query:    2 DIPKGANIVSGRWGRSWKTNEHGNVLKPKPLMVARGCSQEYGVEYLKVFAQKSLTSSVKLVVGVAVENGW 71
            D+P G   +  +W    K NE+G V K K  +VA+GCSQ+YGV+Y++VFA  +   ++++V+ +A +  W
Sbjct:  854 DLPSGGKTIGVKWIFKTKLNENGEVDKYKARLVAKGCSQQYGVDYVEVFAPVARLETIRIVISLAAQKDW 923          
BLAST of mRNA_H-elongata_contig5002.12224.1 vs. uniprot
Match: A0A6D2LPC9_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2LPC9_9BRAS)

HSP 1 Score: 65.1 bits (157), Expect = 3.440e-11
Identity = 29/70 (41.43%), Postives = 46/70 (65.71%), Query Frame = 0
Query:    4 PKGANIVSGRWGRSWKTNEHGNVLKPKPLMVARGCSQEYGVEYLKVFAQKSLTSSVKLVVGVAVENGWEL 73
            P+  NI+S +W    KTN +G+ +K K  +VARG SQEYGV+YL+ FA  S   ++++++ +A +  W L
Sbjct:   20 PEKKNIISVKWIYRIKTNANGDPIKHKARLVARGFSQEYGVDYLETFAPVSRHDTIRVILALAAQKKWRL 89          
BLAST of mRNA_H-elongata_contig5002.12224.1 vs. uniprot
Match: A0A0L9TUK8_PHAAN (Uncharacterized protein n=1 Tax=Phaseolus angularis TaxID=3914 RepID=A0A0L9TUK8_PHAAN)

HSP 1 Score: 66.6 bits (161), Expect = 4.120e-11
Identity = 28/72 (38.89%), Postives = 46/72 (63.89%), Query Frame = 0
Query:    2 DIPKGANIVSGRWGRSWKTNEHGNVLKPKPLMVARGCSQEYGVEYLKVFAQKSLTSSVKLVVGVAVENGWEL 73
            D P G   +  +W    K NEHGN+ K K  +VA+G SQ+YGV+Y +VFA  +   +V++++ +A ++ WE+
Sbjct:  869 DAPTGITPIGVKWVFKTKLNEHGNIEKHKARLVAKGYSQQYGVDYTEVFAPVARLDTVRVLLAIAAQHKWEV 940          
BLAST of mRNA_H-elongata_contig5002.12224.1 vs. uniprot
Match: Q9LH44_ARATH (Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9LH44_ARATH)

HSP 1 Score: 66.6 bits (161), Expect = 4.130e-11
Identity = 28/70 (40.00%), Postives = 45/70 (64.29%), Query Frame = 0
Query:    4 PKGANIVSGRWGRSWKTNEHGNVLKPKPLMVARGCSQEYGVEYLKVFAQKSLTSSVKLVVGVAVENGWEL 73
            PK  N++S +W    KT+  G  +K K  +VARG +QEYGV+YL+ FA  S   +++ ++ +A + GW+L
Sbjct:  876 PKDKNVISVKWIFRLKTDASGEAIKRKARLVARGFTQEYGVDYLETFAPVSRYDTIRTIMAIAAQQGWKL 945          
BLAST of mRNA_H-elongata_contig5002.12224.1 vs. uniprot
Match: A0A2K3MGT9_TRIPR (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MGT9_TRIPR)

HSP 1 Score: 66.2 bits (160), Expect = 5.300e-11
Identity = 28/72 (38.89%), Postives = 46/72 (63.89%), Query Frame = 0
Query:    2 DIPKGANIVSGRWGRSWKTNEHGNVLKPKPLMVARGCSQEYGVEYLKVFAQKSLTSSVKLVVGVAVENGWEL 73
            D+P GA  +  +W    K NE+G V K K  +VA+G SQ+YGV+Y +VFA  +   ++++V+ +A + GW +
Sbjct:  293 DLPTGAKTIGLKWIFKTKLNENGEVEKYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAAQKGWNV 364          
BLAST of mRNA_H-elongata_contig5002.12224.1 vs. uniprot
Match: A0A151QP20_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QP20_CAJCA)

HSP 1 Score: 66.2 bits (160), Expect = 5.390e-11
Identity = 29/72 (40.28%), Postives = 46/72 (63.89%), Query Frame = 0
Query:    2 DIPKGANIVSGRWGRSWKTNEHGNVLKPKPLMVARGCSQEYGVEYLKVFAQKSLTSSVKLVVGVAVENGWEL 73
            D PKG   +  +W    K NE GNV K K  +VA+G SQ+YGV+Y +VFA  +   +V++++ +A ++ WE+
Sbjct:   18 DAPKGVTPIGVKWVYKTKLNERGNVEKHKARLVAKGYSQQYGVDYTEVFAPVARLDTVRVLLALAAQHRWEV 89          
BLAST of mRNA_H-elongata_contig5002.12224.1 vs. uniprot
Match: A0A2K3M4Z2_TRIPR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3M4Z2_TRIPR)

HSP 1 Score: 66.2 bits (160), Expect = 5.440e-11
Identity = 28/72 (38.89%), Postives = 46/72 (63.89%), Query Frame = 0
Query:    2 DIPKGANIVSGRWGRSWKTNEHGNVLKPKPLMVARGCSQEYGVEYLKVFAQKSLTSSVKLVVGVAVENGWEL 73
            D+P GA  +  +W    K NE+G V K K  +VA+G SQ+YGV+Y +VFA  +   ++++V+ +A + GW +
Sbjct:   41 DLPTGAKTIGLKWIFKTKLNENGEVEKYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAAQKGWSV 112          
BLAST of mRNA_H-elongata_contig5002.12224.1 vs. uniprot
Match: A0A2K3LTN2_TRIPR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LTN2_TRIPR)

HSP 1 Score: 66.2 bits (160), Expect = 5.500e-11
Identity = 28/72 (38.89%), Postives = 46/72 (63.89%), Query Frame = 0
Query:    2 DIPKGANIVSGRWGRSWKTNEHGNVLKPKPLMVARGCSQEYGVEYLKVFAQKSLTSSVKLVVGVAVENGWEL 73
            D+P GA  +  +W    K NE+G V K K  +VA+G SQ+YGV+Y +VFA  +   ++++V+ +A + GW +
Sbjct:  109 DLPTGAKTIGLKWIFKTKLNENGEVEKYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAAQKGWNV 180          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5002.12224.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A699RE47_TANCI1.260e-1342.25Putative RNA-directed DNA polymerase (Fragment) n=... [more]
A0A4Y1RRK6_PRUDU6.550e-1340.28Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A438HG45_VITVI2.210e-1138.57Retrovirus-related Pol polyprotein from transposon... [more]
A0A6D2LPC9_9BRAS3.440e-1141.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0L9TUK8_PHAAN4.120e-1138.89Uncharacterized protein n=1 Tax=Phaseolus angulari... [more]
Q9LH44_ARATH4.130e-1140.00Copia-like retrotransposable element n=1 Tax=Arabi... [more]
A0A2K3MGT9_TRIPR5.300e-1138.89Copia-type polyprotein (Fragment) n=1 Tax=Trifoliu... [more]
A0A151QP20_CAJCA5.390e-1140.28Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3M4Z2_TRIPR5.440e-1138.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2K3LTN2_TRIPR5.500e-1138.89Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..71
e-value: 6.6E-7
score: 29.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5002contigH-elongata_contig5002:11410..11631 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5002.12224.1mRNA_H-elongata_contig5002.12224.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5002 11410..11631 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5002.12224.1 ID=prot_H-elongata_contig5002.12224.1|Name=mRNA_H-elongata_contig5002.12224.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
KDIPKGANIVSGRWGRSWKTNEHGNVLKPKPLMVARGCSQEYGVEYLKVF
AQKSLTSSVKLVVGVAVENGWEL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2