prot_H-elongata_contig4974.12184.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig4974.12184.1
Unique Name	prot_H-elongata_contig4974.12184.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	134

Homology

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BLAST of mRNA_H-elongata_contig4974.12184.1 vs. uniprot
Match: D7FKU2_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKU2_ECTSI)

HSP 1 Score: 226 bits (575), Expect = 3.370e-74
Identity = 111/123 (90.24%), Postives = 117/123 (95.12%), Query Frame = 0

Query:    1 MLAVAGHLVQQNFRLPGMLSTSANLSFADMPNGVAALSKIPALGLFQIIAFIGFLELGVMKQKEGSFPGDMTLAGEPDAWTRLPDAVKDQKRAIELNNGRAAQMGILGLMMHECVDNHPYIIN 123
            MLAVAGHLVQQNFRLPGMLSTSA+LSFADMPNG+AALSKIPALGLFQIIAFIGFLE+GVMKQKEGSFPGDMTL GEP AWT+  D VK+QKRAIELNNGRAAQMGILGLMMHE V+NHPYIIN
Sbjct:    1 MLAVAGHLVQQNFRLPGMLSTSADLSFADMPNGLAALSKIPALGLFQIIAFIGFLEIGVMKQKEGSFPGDMTLGGEPYAWTKFSDEVKEQKRAIELNNGRAAQMGILGLMMHEAVNNHPYIIN 123

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BLAST of mRNA_H-elongata_contig4974.12184.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 4.610e-60
Identity = 98/135 (72.59%), Postives = 107/135 (79.26%), Query Frame = 0

Query:    1 MLAVAGHLVQQNFRLPGMLSTSANLSFADMPNGVAALSKIPALGLFQIIAFIGFLELGVMKQKEGSFPGDMTLAGEPDA--WTRLPDAVKDQKRAIELNNGRAAQMGILGLMMHECVDNHPYIINDLLGFPYTFN 133
            MLA+AGHL QQN RLPGMLS SANLSFADMPNGVAALSKIP  GL QI AF+GFLEL VMK  EGSFPGD T  G P A  W  + +  ++ KRAIELNNGRAAQMGIL LM+HE ++N PYIINDLLG  YTFN
Sbjct:   84 MLAIAGHLTQQNVRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTFN 218

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BLAST of mRNA_H-elongata_contig4974.12184.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 5.800e-60
Identity = 97/135 (71.85%), Postives = 106/135 (78.52%), Query Frame = 0

Query:    1 MLAVAGHLVQQNFRLPGMLSTSANLSFADMPNGVAALSKIPALGLFQIIAFIGFLELGVMKQKEGSFPGDMTLAGEP--DAWTRLPDAVKDQKRAIELNNGRAAQMGILGLMMHECVDNHPYIINDLLGFPYTFN 133
            MLA+AGHL QQN RLPGMLS SANLSFADMPNGVAALSKIP  GL QI AFIGFLEL VMK  EGSFPGD TL G P   +W  + +  +  KRAIELNNGRAAQMGIL LM+HE ++N PY+INDLLG  Y FN
Sbjct:   47 MLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNFN 181

[Close]

BLAST of mRNA_H-elongata_contig4974.12184.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY)

HSP 1 Score: 191 bits (484), Expect = 1.210e-59
Identity = 97/135 (71.85%), Postives = 106/135 (78.52%), Query Frame = 0

Query:    1 MLAVAGHLVQQNFRLPGMLSTSANLSFADMPNGVAALSKIPALGLFQIIAFIGFLELGVMKQKEGSFPGDMTLAGEPDA--WTRLPDAVKDQKRAIELNNGRAAQMGILGLMMHECVDNHPYIINDLLGFPYTFN 133
            MLA+AGHL QQN RLPGMLS SANLSFADMPNGVAALSKIP  GL QI  FIGFLEL VMK  EGSFPGD TL G P A  W  + +  ++ KRAIELNNGRAAQMGIL LM+HE ++N PY+INDLLG  Y FN
Sbjct:   48 MLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 182

[Close]

BLAST of mRNA_H-elongata_contig4974.12184.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 192 bits (487), Expect = 1.270e-59
Identity = 97/135 (71.85%), Postives = 107/135 (79.26%), Query Frame = 0

Query:    1 MLAVAGHLVQQNFRLPGMLSTSANLSFADMPNGVAALSKIPALGLFQIIAFIGFLELGVMKQKEGSFPGDMTLAGEP--DAWTRLPDAVKDQKRAIELNNGRAAQMGILGLMMHECVDNHPYIINDLLGFPYTFN 133
            MLA+AGHL QQN RLPGMLS SANLSFADMPNGVAALSKIP  GL QI AFIGFLEL VMK  EGSFPGD TL G P   +W  + +  +  KRAIELNNGRAAQMGIL LM+HE ++N PY+INDL+G  YTFN
Sbjct:   83 MLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTFN 217

[Close]

BLAST of mRNA_H-elongata_contig4974.12184.1 vs. uniprot
Match: A0A6H5KBS3_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS3_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 1.820e-59
Identity = 96/135 (71.11%), Postives = 106/135 (78.52%), Query Frame = 0

Query:    1 MLAVAGHLVQQNFRLPGMLSTSANLSFADMPNGVAALSKIPALGLFQIIAFIGFLELGVMKQKEGSFPGDMTLAGEPDA--WTRLPDAVKDQKRAIELNNGRAAQMGILGLMMHECVDNHPYIINDLLGFPYTFN 133
            MLAVAGHLV QN+R PG LS  A L+FADMPNGVAA+SKIP LGL QI+AFIGFLEL VMK  EGSFPGDMT+ G P A  W  + +  K  KRAIELNNGRAAQMGIL +M+HE + N PYIINDLL  PYTFN
Sbjct:   72 MLAVAGHLVAQNYRFPGYLSYDAKLTFADMPNGVAAISKIPPLGLAQIVAFIGFLELNVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 206

[Close]

BLAST of mRNA_H-elongata_contig4974.12184.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 2.360e-58
Identity = 96/135 (71.11%), Postives = 106/135 (78.52%), Query Frame = 0

Query:    1 MLAVAGHLVQQNFRLPGMLSTSANLSFADMPNGVAALSKIPALGLFQIIAFIGFLELGVMKQKEGSFPGDMTLAGEPDA--WTRLPDAVKDQKRAIELNNGRAAQMGILGLMMHECVDNHPYIINDLLGFPYTFN 133
            MLA+AGHL QQN RLPGMLS SA+LSFADMPNGVAALSKIP  GL QI AF+GFLEL VMK  EGSFPGD T  G P A  W  + +  +  KRAIELNNGRAAQMGIL LM+HE ++N PY+INDLLG  YTFN
Sbjct:   87 MLAIAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 221

[Close]

BLAST of mRNA_H-elongata_contig4974.12184.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI)

HSP 1 Score: 193 bits (491), Expect = 3.030e-58
Identity = 98/135 (72.59%), Postives = 107/135 (79.26%), Query Frame = 0

Query:    1 MLAVAGHLVQQNFRLPGMLSTSANLSFADMPNGVAALSKIPALGLFQIIAFIGFLELGVMKQKEGSFPGDMTLAGEP--DAWTRLPDAVKDQKRAIELNNGRAAQMGILGLMMHECVDNHPYIINDLLGFPYTFN 133
            MLA+AGHL QQN RLPGMLS SANLSFADMPNGVAALSKIP  GL QI AFIGFLEL VMK  EGSFPGD TL G P   +W  + +  +  KRAIELNNGRAAQMGIL LM+HE ++N PY+INDLLG  YTFN
Sbjct:  243 MLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 377

[Close]

BLAST of mRNA_H-elongata_contig4974.12184.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 187 bits (476), Expect = 5.780e-58
Identity = 97/135 (71.85%), Postives = 104/135 (77.04%), Query Frame = 0

Query:    1 MLAVAGHLVQQNFRLPGMLSTSANLSFADMPNGVAALSKIPALGLFQIIAFIGFLELGVMKQKEGSFPGDMTLAGEPDA--WTRLPDAVKDQKRAIELNNGRAAQMGILGLMMHECVDNHPYIINDLLGFPYTFN 133
            MLA+AGHL QQN RLPGMLS SANLSFADMPNGVAALSKIP  GL QI  FIGFLEL VMK  EGSFPGD TL G P A  W  +    +  KRAIELNNGRAAQMGIL LM+HE ++N PY+INDLLG  Y FN
Sbjct:   82 MLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 216

[Close]

BLAST of mRNA_H-elongata_contig4974.12184.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 187 bits (475), Expect = 7.020e-58
Identity = 96/135 (71.11%), Postives = 103/135 (76.30%), Query Frame = 0

Query:    1 MLAVAGHLVQQNFRLPGMLSTSANLSFADMPNGVAALSKIPALGLFQIIAFIGFLELGVMKQKEGSFPGDMTLAGEPDA--WTRLPDAVKDQKRAIELNNGRAAQMGILGLMMHECVDNHPYIINDLLGFPYTFN 133
            MLA+AGHL QQN RLPGMLS SANLSFADMPNGVAALSKIP  GL QI  FIGFLEL VMK  EGSFPGD  + G P A  W  +    +  KRAIELNNGRAAQMGILG+M+HE + N PYI NDLLG  YTFN
Sbjct:   77 MLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTFN 211

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig4974.12184.1 vs. uniprot

BLAST of mRNA_H-elongata_contig4974.12184.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FKU2_ECTSI	3.370e-74	90.24	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5KCX6_9PHAE	4.610e-60	72.59	LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepI...	[more]
A0A6H5JDS8_9PHAE	5.800e-60	71.85	LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
FCPD_MACPY	1.210e-59	71.85	Fucoxanthin-chlorophyll a-c binding protein D, chl...	[more]
FCPB_MACPY	1.270e-59	71.85	Fucoxanthin-chlorophyll a-c binding protein B, chl...	[more]
A0A6H5KBS3_9PHAE	1.820e-59	71.11	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5JHT6_9PHAE	2.360e-58	71.11	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LNK6_ECTSI	3.030e-58	72.59	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
FCPC_MACPY	5.780e-58	71.85	Fucoxanthin-chlorophyll a-c binding protein C, chl...	[more]
FCPF_MACPY	7.020e-58	71.11	Fucoxanthin-chlorophyll a-c binding protein F, chl...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 1..127 e-value: 2.5E-11 score: 45.7
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 1..113 e-value: 1.9E-15 score: 57.8
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..117
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 1..117
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..39
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 60..133
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 40..59
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 1..126
None	No IPR available	TMHMM	TMhelix		coord: 33..55

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig4974	contig	H-elongata_contig4974:1883..3114 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig4974.12184.1	mRNA_H-elongata_contig4974.12184.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig4974 1836..3950 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig4974.12184.1 ID=prot_H-elongata_contig4974.12184.1|Name=mRNA_H-elongata_contig4974.12184.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
MLAVAGHLVQQNFRLPGMLSTSANLSFADMPNGVAALSKIPALGLFQIIA
FIGFLELGVMKQKEGSFPGDMTLAGEPDAWTRLPDAVKDQKRAIELNNGR
AAQMGILGLMMHECVDNHPYIINDLLGFPYTFN*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln