prot_H-elongata_contig49728.12183.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig49728.12183.1
Unique Nameprot_H-elongata_contig49728.12183.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length57
Homology
BLAST of mRNA_H-elongata_contig49728.12183.1 vs. uniprot
Match: D8LAV1_ECTSI (Similar to syntaxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAV1_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 1.200e-13
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 0
Query:    1 MLQNVNDDFEEAITGLDAVTRKTKDLIKKSGGMRNFLIILI 41
            ML+NVN DFEEAI GLDAVT+KT++LIKKSGGMRNFLIIL+
Sbjct:   95 MLENVNTDFEEAIGGLDAVTKKTQELIKKSGGMRNFLIILV 135          
BLAST of mRNA_H-elongata_contig49728.12183.1 vs. uniprot
Match: A0A7S1VE05_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VE05_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 5.440e-9
Identity = 30/55 (54.55%), Postives = 43/55 (78.18%), Query Frame = 0
Query:    1 MLQNVNDDFEEAITGLDAVTRKTKDLIKKSGGMRNFLIILILVVXLAVLVFLVIY 55
            ML ++  D  EA + LD VT++T++LI+KSGGM+NF+IIL L+  + VLVFL+IY
Sbjct:   79 MLDDMEHDLGEATSNLDRVTKRTRELIRKSGGMKNFMIILTLIGIVVVLVFLLIY 133          
BLAST of mRNA_H-elongata_contig49728.12183.1 vs. uniprot
Match: A0A7S2WUU9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUU9_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 9.440e-9
Identity = 28/55 (50.91%), Postives = 44/55 (80.00%), Query Frame = 0
Query:    1 MLQNVNDDFEEAITGLDAVTRKTKDLIKKSGGMRNFLIILILVVXLAVLVFLVIY 55
            ++ +++D+ + ++  LD+VT+KTKDLIKKSGG+R FL++++L V L VL  LVIY
Sbjct:   72 LISDLDDEMDNSMGALDSVTKKTKDLIKKSGGLRYFLVVVLLAVILFVLTVLVIY 126          
BLAST of mRNA_H-elongata_contig49728.12183.1 vs. uniprot
Match: A0A835YWI7_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWI7_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.350e-8
Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 0
Query:    1 MLQNVNDDFEEAITGLDAVTRKTKDLIKKSGGMRNFLIILILVVXLAVLVFLVIY 55
            ML  +  D++EAI G++ VT+KTK+LIK SGG RNF II  LV  + VL+ LVIY
Sbjct:   84 MLSEMEVDYDEAIYGMEMVTKKTKELIKTSGGPRNFCIIAFLVAVVVVLLVLVIY 138          
BLAST of mRNA_H-elongata_contig49728.12183.1 vs. uniprot
Match: A0A7S4IM31_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IM31_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 4.300e-8
Identity = 26/55 (47.27%), Postives = 43/55 (78.18%), Query Frame = 0
Query:    1 MLQNVNDDFEEAITGLDAVTRKTKDLIKKSGGMRNFLIILILVVXLAVLVFLVIY 55
            +L  + DD ++A T LD VT+KT++L+++SGG +NFLII+ L + + +L+FL+IY
Sbjct:   79 LLDEMEDDLDQATTRLDFVTQKTRELVQRSGGKKNFLIIVGLTIVVIILIFLIIY 133          
BLAST of mRNA_H-elongata_contig49728.12183.1 vs. uniprot
Match: K3X1D9_GLOUD (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1D9_GLOUD)

HSP 1 Score: 53.9 bits (128), Expect = 1.080e-7
Identity = 27/54 (50.00%), Postives = 44/54 (81.48%), Query Frame = 0
Query:    1 MLQNVNDDFEEAITGLDAVTRKTKDLIKKSGGMRNFLIILILVVXLAVLVFLVI 54
            ML ++N++ ++A   L AVT+KTK+LI++SGGM+NF++I++LV  L +L +LVI
Sbjct:   73 MLDDLNEETDKASEALQAVTKKTKELIEQSGGMKNFVVIIVLVFVLLLLTYLVI 126          
BLAST of mRNA_H-elongata_contig49728.12183.1 vs. uniprot
Match: A0A7S2P3Q0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P3Q0_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.230e-7
Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = 0
Query:    1 MLQNVNDDFEEAITGLDAVTRKTKDLIKKSGGMRNFLIILILVVXLAVLVFLVIY 55
            ML ++ +D  +A   LD VTRKTK+LI+KSGG +NF IIL L+  + VL FL++Y
Sbjct:   80 MLNDMENDLSDATDNLDYVTRKTKELIQKSGGKKNFCIILGLIGVIVVLFFLIVY 134          
BLAST of mRNA_H-elongata_contig49728.12183.1 vs. uniprot
Match: A0A7S3PW73_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PW73_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 2.860e-6
Identity = 28/55 (50.91%), Postives = 41/55 (74.55%), Query Frame = 0
Query:    1 MLQNVNDDFEEAITGLDAVTRKTKDLIKKSGGMRNFLIILILVVXLAVLVFLVIY 55
            ML ++ ++ ++A   LD VT KTK+LI+KSGG RNF+IIL L + + VL+F VI+
Sbjct:  133 MLDDMENELDKATDNLDLVTMKTKELIQKSGGKRNFMIILSLSLVVVVLLFFVIW 187          
BLAST of mRNA_H-elongata_contig49728.12183.1 vs. uniprot
Match: A0A7S4A8R5_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4A8R5_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 3.330e-6
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 0
Query:    1 MLQNVNDDFEEAITGLDAVTRKTKDLIKKSGGMRNFLIILILVVXLAVLVFLVIY 55
            ML+++  D +EA   LD VTR TK+LI +SGGM  F +I IL + + +L+FLVIY
Sbjct:   93 MLESMETDLDEAGDELDIVTRSTKELIARSGGMSTFCLIAILSIVVLILLFLVIY 147          
BLAST of mRNA_H-elongata_contig49728.12183.1 vs. uniprot
Match: A0A2D4C947_PYTIN (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C947_PYTIN)

HSP 1 Score: 51.2 bits (121), Expect = 3.960e-6
Identity = 25/54 (46.30%), Postives = 42/54 (77.78%), Query Frame = 0
Query:    1 MLQNVNDDFEEAITGLDAVTRKTKDLIKKSGGMRNFLIILILVVXLAVLVFLVI 54
            ML ++N+D ++A   L  VT+KT++LIK+SGG++NF++I++L   L +L +LVI
Sbjct:  172 MLDDLNEDTDKAQDALKXVTKKTQELIKQSGGLKNFIVIIVLAFILLILTYLVI 225          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49728.12183.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LAV1_ECTSI1.200e-1382.93Similar to syntaxin n=1 Tax=Ectocarpus siliculosus... [more]
A0A7S1VE05_9STRA5.440e-954.55Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2WUU9_9STRA9.440e-950.91Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835YWI7_9STRA3.350e-856.36t-SNARE coiled-coil homology domain-containing pro... [more]
A0A7S4IM31_9STRA4.300e-847.27Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
K3X1D9_GLOUD1.080e-750.00t-SNARE coiled-coil homology domain-containing pro... [more]
A0A7S2P3Q0_9STRA1.230e-752.73Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S3PW73_9STRA2.860e-650.91Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S4A8R5_9STRA3.330e-650.91Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A2D4C947_PYTIN3.960e-646.30t-SNARE coiled-coil homology domain-containing pro... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12791:SF47coord: 1..56
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 56..56
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..35
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 36..55
NoneNo IPR availableTMHMMTMhelixcoord: 36..55
IPR039897BET1-like proteinPANTHERPTHR12791GOLGI SNARE BET1-RELATEDcoord: 1..56

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49728contigH-elongata_contig49728:1256..1875 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49728.12183.1mRNA_H-elongata_contig49728.12183.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig49728 360..3070 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig49728.12183.1 ID=prot_H-elongata_contig49728.12183.1|Name=mRNA_H-elongata_contig49728.12183.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
MLQNVNDDFEEAITGLDAVTRKTKDLIKKSGGMRNFLIILILVVILAVLV
FLVIYV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039897BET1