mRNA_H-elongata_contig49728.12183.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49728.12183.1
Unique NamemRNA_H-elongata_contig49728.12183.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig49728.12183.1 vs. uniprot
Match: D8LAV1_ECTSI (Similar to syntaxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAV1_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 2.790e-29
Identity = 61/78 (78.21%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 KTQIEHQDDQLGDIGESAARLGNLSLEISKELDQQNKMLQNVNDDFEEAITGLDAVTRKTKDLIKKSGGMRNFLIILI 234
            K+Q+EHQD  L +IG++A+RLGN+SLEISKELDQQNKML+NVN DFEEAI GLDAVT+KT++LIKKSGGMRNFLIIL+
Sbjct:   58 KSQMEHQDAHLSEIGQTASRLGNISLEISKELDQQNKMLENVNTDFEEAIGGLDAVTKKTQELIKKSGGMRNFLIILV 135
[Close]
BLAST of mRNA_H-elongata_contig49728.12183.1 vs. uniprot
Match: A0A835YWI7_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWI7_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 3.160e-21
Identity = 55/92 (59.78%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:    1 KTQIEHQDDQLGDIGESAARLGNLSLEISKELDQQNKMLQNVNDDFEEAITGLDAVTRKTKDLIKKSGGMRNFLIILILVXXXAVLVFLVIY 276
            KTQ+  QD  L DIG    RLG +SLEISKELD QNKML  +  D++EAI G++ VT+KTK+LIK SGG RNF II  LV    VL+ LVIY
Sbjct:   47 KTQVAEQDRHLEDIGRGVERLGEISLEISKELDGQNKMLSEMEVDYDEAIYGMEMVTKKTKELIKTSGGPRNFCIIAFLVAVVVVLLVLVIY 138
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BLAST of mRNA_H-elongata_contig49728.12183.1 vs. uniprot
Match: A0A7S1VE05_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VE05_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 3.520e-18
Identity = 47/92 (51.09%), Postives = 69/92 (75.00%), Query Frame = 1 
Query:    1 KTQIEHQDDQLGDIGESAARLGNLSLEISKELDQQNKMLQNVNDDFEEAITGLDAVTRKTKDLIKKSGGMRNFLIILILVXXXAVLVFLVIY 276
            +TQ++ QD+ L  + +SA RLG +S+ I +ELD QN+ML ++  D  EA + LD VT++T++LI+KSGGM+NF+IIL L+    VLVFL+IY
Sbjct:   42 RTQLQKQDEGLEMLAQSAQRLGQMSMGIHEELDIQNQMLDDMEHDLGEATSNLDRVTKRTRELIRKSGGMKNFMIILTLIGIVVVLVFLLIY 133
[Close]
BLAST of mRNA_H-elongata_contig49728.12183.1 vs. uniprot
Match: A0A7S4IM31_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IM31_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.770e-17
Identity = 45/92 (48.91%), Postives = 68/92 (73.91%), Query Frame = 1 
Query:    1 KTQIEHQDDQLGDIGESAARLGNLSLEISKELDQQNKMLQNVNDDFEEAITGLDAVTRKTKDLIKKSGGMRNFLIILILVXXXAVLVFLVIY 276
            + Q++ QD+ L  +G+SA RLG LS+ I +EL QQNK+L  + DD ++A T LD VT+KT++L+++SGG +NFLII+ L     +L+FL+IY
Sbjct:   42 RLQMKRQDEGLEMLGQSADRLGQLSMNIHEELGQQNKLLDEMEDDLDQATTRLDFVTQKTRELVQRSGGKKNFLIIVGLTIVVIILIFLIIY 133
[Close]
BLAST of mRNA_H-elongata_contig49728.12183.1 vs. uniprot
Match: A0A7S2P3Q0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P3Q0_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.460e-17
Identity = 48/92 (52.17%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:    1 KTQIEHQDDQLGDIGESAARLGNLSLEISKELDQQNKMLQNVNDDFEEAITGLDAVTRKTKDLIKKSGGMRNFLIILILVXXXAVLVFLVIY 276
            + Q++ QD+ L  +  SA RLG LS+ IS ELD QNKML ++ +D  +A   LD VTRKTK+LI+KSGG +NF IIL L+    VL FL++Y
Sbjct:   43 RQQLQKQDEGLEMLSLSATRLGELSMNISTELDAQNKMLNDMENDLSDATDNLDYVTRKTKELIQKSGGKKNFCIILGLIGVIVVLFFLIVY 134
[Close]
BLAST of mRNA_H-elongata_contig49728.12183.1 vs. uniprot
Match: K3X1D9_GLOUD (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1D9_GLOUD)

HSP 1 Score: 81.6 bits (200), Expect = 3.540e-15
Identity = 42/87 (48.28%), Postives = 64/87 (73.56%), Query Frame = 1 
Query:   13 EHQDDQLGDIGESAARLGNLSLEISKELDQQNKMLQNVNDDFEEAITGLDAVTRKTKDLIKKSGGMRNFLIILILVXXXAVLVFLVI 273
            E QD+ L  +  +  RLG++SL IS ELD QN ML ++N++ ++A   L AVT+KTK+LI++SGGM+NF++I++LV    +L +LVI
Sbjct:   40 EKQDESLDQLHTAVKRLGDMSLSISTELDSQNAMLDDLNEETDKASEALQAVTKKTKELIEQSGGMKNFVVIIVLVFVLLLLTYLVI 126
[Close]
BLAST of mRNA_H-elongata_contig49728.12183.1 vs. uniprot
Match: A0A7S2WUU9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUU9_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 6.520e-15
Identity = 40/89 (44.94%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:   10 IEHQDDQLGDIGESAARLGNLSLEISKELDQQNKMLQNVNDDFEEAITGLDAVTRKTKDLIKKSGGMRNFLIILILVXXXAVLVFLVIY 276
            I+ QD  L  +  S +RLG++SL I +E++ QN+++ +++D+ + ++  LD+VT+KTKDLIKKSGG+R FL++++L     VL  LVIY
Sbjct:   38 IKEQDQDLERLSHSVSRLGDMSLGIKEEIEVQNRLISDLDDEMDNSMGALDSVTKKTKDLIKKSGGLRYFLVVVLLAVILFVLTVLVIY 126
[Close]
BLAST of mRNA_H-elongata_contig49728.12183.1 vs. uniprot
Match: A0A6U0J490_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0J490_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 9.700e-15
Identity = 43/92 (46.74%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:    1 KTQIEHQDDQLGDIGESAARLGNLSLEISKELDQQNKMLQNVNDDFEEAITGLDAVTRKTKDLIKKSGGMRNFLIILILVXXXAVLVFLVIY 276
            + Q++ QD+ L  + +SA RLG LSL IS+EL  QNKML  +  D ++    LD VT+KTK++IK+SGG +NFLII+ L+    +L+ L++Y
Sbjct:   38 RQQLKQQDEGLDFLSKSADRLGALSLGISEELGHQNKMLDEMETDLDKTTQRLDFVTQKTKEMIKRSGGKQNFLIIVALIVVAFILILLILY 129
[Close]
BLAST of mRNA_H-elongata_contig49728.12183.1 vs. uniprot
Match: A0A7S2GGH2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GGH2_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.740e-14
Identity = 39/76 (51.32%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:    1 KTQIEHQDDQLGDIGESAARLGNLSLEISKELDQQNKMLQNVNDDFEEAITGLDAVTRKTKDLIKKSGGMRNFLII 228
            K  +E QD  L  + +S  RLG++SLEI KE++ QNKM+ +++DD + A+T LD VT KTK+LIKK+GG + FL+I
Sbjct:   36 KDYLEEQDQSLEQLSDSVLRLGHMSLEIGKEIETQNKMISDLDDDMDTAVTSLDIVTAKTKELIKKTGGFKWFLLI 111
[Close]
BLAST of mRNA_H-elongata_contig49728.12183.1 vs. uniprot
Match: A0A6U0R1J2_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A6U0R1J2_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 5.550e-14
Identity = 45/92 (48.91%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:    1 KTQIEHQDDQLGDIGESAARLGNLSLEISKELDQQNKMLQNVNDDFEEAITGLDAVTRKTKDLIKKSGGMRNFLIILILVXXXAVLVFLVIY 276
            K Q++ QD+ L  + +SA RLG LSL I +EL  QNKML  + D+ + A T L+ VT KTK+LI+KSGG RN L+I+ L     +L+ L+IY
Sbjct:   44 KLQMKQQDEGLEMLSQSADRLGQLSLGIHEELGNQNKMLSEMEDNLDHATTRLNFVTNKTKELIQKSGGKRNCLLIVGLSLVVVILIMLIIY 135
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49728.12183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAV1_ECTSI2.790e-2978.21Similar to syntaxin n=1 Tax=Ectocarpus siliculosus... [more]
A0A835YWI7_9STRA3.160e-2159.78t-SNARE coiled-coil homology domain-containing pro... [more]
A0A7S1VE05_9STRA3.520e-1851.09Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S4IM31_9STRA1.770e-1748.91Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2P3Q0_9STRA3.460e-1752.17Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
K3X1D9_GLOUD3.540e-1548.28t-SNARE coiled-coil homology domain-containing pro... [more]
A0A7S2WUU9_9STRA6.520e-1544.94Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6U0J490_9STRA9.700e-1546.74Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2GGH2_9STRA1.740e-1451.32Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6U0R1J2_9STRA5.550e-1448.91Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49728contigH-elongata_contig49728:360..3070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionTarget SNARE coiled-coil domain
Ec32 orthologEc-27_006300.1
Exons3
Model size1178
Cds size171
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49728.12183.1prot_H-elongata_contig49728.12183.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49728 1256..1875 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930818.9105144-UTR-H-elongata_contig49728:359..12551622930818.9105144-UTR-H-elongata_contig49728:359..1255Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49728 360..1255 -
1691679583.6641762-UTR-H-elongata_contig49728:359..12551691679583.6641762-UTR-H-elongata_contig49728:359..1255Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49728 360..1255 -
1622930818.9900792-UTR-H-elongata_contig49728:1875..19121622930818.9900792-UTR-H-elongata_contig49728:1875..1912Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49728 1876..1912 -
1691679583.713696-UTR-H-elongata_contig49728:1875..19121691679583.713696-UTR-H-elongata_contig49728:1875..1912Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49728 1876..1912 -
1622930819.0209658-UTR-H-elongata_contig49728:2996..30701622930819.0209658-UTR-H-elongata_contig49728:2996..3070Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49728 2997..3070 -
1691679583.7251153-UTR-H-elongata_contig49728:2996..30701691679583.7251153-UTR-H-elongata_contig49728:2996..3070Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49728 2997..3070 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930818.950083-CDS-H-elongata_contig49728:1255..13351622930818.950083-CDS-H-elongata_contig49728:1255..1335Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49728 1256..1335 -
1691679583.6811068-CDS-H-elongata_contig49728:1255..13351691679583.6811068-CDS-H-elongata_contig49728:1255..1335Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49728 1256..1335 -
1622930818.9712665-CDS-H-elongata_contig49728:1784..18751622930818.9712665-CDS-H-elongata_contig49728:1784..1875Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49728 1785..1875 -
1691679583.6974156-CDS-H-elongata_contig49728:1784..18751691679583.6974156-CDS-H-elongata_contig49728:1784..1875Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49728 1785..1875 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49728.12183.1

>prot_H-elongata_contig49728.12183.1 ID=prot_H-elongata_contig49728.12183.1|Name=mRNA_H-elongata_contig49728.12183.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
MLQNVNDDFEEAITGLDAVTRKTKDLIKKSGGMRNFLIILILVVILAVLV
FLVIYV*
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mRNA from alignment at H-elongata_contig49728:360..3070-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49728.12183.1 ID=mRNA_H-elongata_contig49728.12183.1|Name=mRNA_H-elongata_contig49728.12183.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2711bp|location=Sequence derived from alignment at H-elongata_contig49728:360..3070- (Himanthalia elongata Himel1 dioecious)
AAGACTCAAATAGAGCACCAGGATGATCAGCTGGGGGACATAGGCGAGTC
GGCGGCGCGATTGGGGAACTTGAGGTGAGACAAGAGGCATCAATAGCTCA
ACTATGTTAACCGTTCGTAGACTACAATACCATGCAGCCTAAGATCCCGG
CCCATATTTCTTATTGTTTACTCCCGTTACCTTTACCTTAGCCCCATTTT
TAGCATTAGTTTCGATGCGGTATTTTTCCTTGTAACTGCGAGAAGTATTG
TTTTATTATCTTGCGCTGGCACCTTTAATCATTTCTCTAGTTGAACCAGT
ATTAATAATTCTATTTGGCAGCAATGATTAAAATGGATGGTTCACGTCTG
GGGTTGATGTTGATGTTGATGATGATGTTGATGCTGTTGTGTGGTCGTTA
CAGTTGACCTGATCGTGGATCGTGGATCGTGCTGGCGATTTCGATCGTGC
TAGCGATTTCGAATTAGGTTTTCTAACTGCTGTACCTTGTTCTCCACATT
TCTTATAGCCGAGACCGCAGCTCAGATTACCATGACTACGATTACTAGAC
TACTAAACTAGCACTATTCTGATATCTTGATAACGCCGTCTGGCCAAATT
TCAGCATCGCTCTCTCTCTTCCAAGCCAAATTTGTAGCCGACGCCGCTGC
CTCAGCATGCGAATGAACCCTAGAACGTCAACGCGCACATGTACACAAAT
AATGTCATCGCACACAAGCTGAATATGGCCTAGTTGTCGTCACCGTATCC
CGTATCCTCCAGCGAGAACGATTAGCTAGGGGGGAGGGGGTCTAAATTAT
AATTCCAAAGTAGAGTGATAAAAATGAAATGTTACCTGGAAAGGGCGGGT
TACAAAAAATCAAATTCCCGTCGATTTAAATTTAAATCGGGCTCTGATTG
GACGAAGGCTAGGCGTTATTTAGATTTCGACTAATCAGAGCCCGATTGAA
ATTTAAATCGACTGGTAATGAAATTTTTGCTACCTTGTTCCTAAGTATTT
AACCGAGGGTTGGCCTACATGTTTTCCTCCTCAGTACCCGTACCAGAAAC
GCCTCCACCCATGTAATATAGCTCTCTCTCTCTTTATATTTCTCTATCGA
TACATATAGTTTAAACCCCTCCTCATCCGCTTTCTTGTGCGTACCATGAA
TCGATCAGCTTGGAAATCTCAAAGGAGCTGGATCAGCAAAACAAGATGCT
GCAAAACGTTAACGATGATTTCGAGGAGGCGATAACGGGCTTAGATGCTG
TCACTCGCAAGACGAAGGACCTCATAAAAAAGTCTGGTGAGCGTTGGTGA
GGTTTCTCATACCGTCTCATTTTGAATCGGACGATGTGCGGTTAGTGTCG
AGCATCTGAAAATTCGTCACGATGGACTTGATAGTTGGTTTTTCTTCTTA
TTATAAATAGCTTCTTTGGCCTAATAATACAGTGTAAAACAACACATTCT
TGCAGGTCGACCCATATTATCAACCACCACAACTTACTTTAATGCTTTTT
TTGCCCTTTTCAGAAACGAAAAAGAAAACCCATTCTAATACAGTGCACAG
TTAGTTTTGATCCGTCTGCGGGAAAAAATATAATTAAAAAAGGGGTTGGT
TGTTTGTCGGCCCCGTTAAACGAGAGAAAGGGTTTCCATGCATGATAATT
GGATTTAGAGCCTTCTCTTGATAACAATATTTACCCCGTTCCCATTTGCC
ACCTCTCGATTGATTCATTTCTCGCTTTTCACCAGGTGGCATGCGAAATT
TCTTGATAATTTTGATCCTCGTGGTGATCTTGGCTGTTCTGGTTTTCCTC
GTCATCTACGTATGACATCGTGCGAGGTAGGGTAGAGAGTCAGTTAGGGC
ATAGTAGACCATCCTTCGCAACGCAAATATCCGTTGCAAATCTCCGTATC
TGTATATTTCGGCACTCGTAATCGTGTGCGGGAGAAGCCTCTCTGTCGTC
CCCTCTGGTGGAGAGGAAGCACTTGCTTGGATCGTACTGGGGAGACGTTG
CTGGCCGGCCATTCACGGCAGCATCCCCCCCCCAATCCCTTGTGCCGTAA
CGCCTCTTTTGCGAGCCAGACGCAAGAGATCGGCAAGCGGCCTACTGTGC
GTGCCGGGTAAAAGTCTCGATCCTGATCATTAGGACGGGAGTGCGAGTGG
AGGAGAGGGGCTTGAGTCATGCTTCGCCGGATTTGCGTAGGGCCCAGTAC
GATTGGTGTGTATCGTGGTGTTGGTGGTCGATGGCTTCTCGAGGAGGCAC
TTCGTATAGCTAGCTTTATATTAGTTTTAAATGTATCTACACGCAAGTAT
AAGTGCAATACTTCGTTTTGATCGACATGTGCCCTGGGGGGTGTACTCAG
GTACCTCGCACGCCCCCCCCCCCGTTCTGTATCCTCCGGCCAGCCAGCCA
GCCAGCCGACCGAACGACCGACCGACCAATCAACTATCAATATATTAATA
ATAGGAGTCGAGTAGAGAATTAAAACATCACTGTCCAGTTTTAAAATTTT
CGCTGTTACCTCGGTAAGTGGCGGGGAAGAGGGGGTAAGTGTGTGGCGGT
AACCTATGCCTATAACTCAGAACAATTTTCGGCGTGTTAGCTATGAAAGA
TAGCGAGAGCCAGCTATTATAGCTATTTTTTGTGAATTTTGACGCTTTGG
GACTATAGGAAAATGAAGAGGCCCAATTTATAATATATATTTTCCCGTGA
TGGACGACAAA
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Coding sequence (CDS) from alignment at H-elongata_contig49728:360..3070-

>mRNA_H-elongata_contig49728.12183.1 ID=mRNA_H-elongata_contig49728.12183.1|Name=mRNA_H-elongata_contig49728.12183.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig49728:360..3070- (Himanthalia elongata Himel1 dioecious)
ATGCTGCAAAACGTTAACGATGATTTCGAGGAGGCGATAACGGGCTTAGA
TGCTGTCACTCGCAAGACGAAGGACCTCATAAAAAAGTCTGATGCTGCAA
AACGTTAACGATGATTTCGAGGAGGCGATAACGGGCTTAGATGCTGTCAC
TCGCAAGACGAAGGACCTCATAAAAAAGTCTGGTGGCATGCGAAATTTCT
TGATAATTTTGATCCTCGTGGTGATCTTGGCTGTTCTGGTTTTCCTCGTC
ATCTACGTATGAGTGGCATGCGAAATTTCTTGATAATTTTGATCCTCGTG
GTGATCTTGGCTGTTCTGGTTTTCCTCGTCATCTACGTATGA
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