prot_H-elongata_contig49727.12182.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig49727.12182.1
Unique Nameprot_H-elongata_contig49727.12182.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length261
Homology
BLAST of mRNA_H-elongata_contig49727.12182.1 vs. uniprot
Match: D8LD24_ECTSI (THO complex subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD24_ECTSI)

HSP 1 Score: 341 bits (875), Expect = 4.830e-104
Identity = 175/263 (66.54%), Postives = 208/263 (79.09%), Query Frame = 0
Query:    1 VLAHRSDEIHTTMLQVSEFVCSKAWIRNKCPSIEALMRTYKLKPKVSFHIWRPVINENLMKHWFPKPGTKTEKEQKEEADANRFIQELEASIPEL--IPGLSPLTAKLFLIFWALSLSDVYIPTKKYGQVVSNMNKTKRRAEIKLAQAERGEVTLTKAEKTRYTYEKKTCPGLASKLEVEKATQSQHVKKVKNKLREIKATLFXXXXXXXVGDGRRMDTEAVDAILKHLVAPRLSMGPDEAYFCSKFFNTLHLIEAPQFNRYV 261
            VL HR+DE HTT+LQ  EFVCSKAWI++KCP+I+ L+ TY L+P+V FHIWRPVINENL+K WFPK GTKTE+EQ++EA A RFI ELEASI EL  +P  SPLT+KL LIFWALSL DVYIPTKKY QVV+NMN+ KRRA+ KL QAE   VT++KAE++RY  ++KT P +A+KLE EK +QS HVK+VKNKLREIKA+LF        G       E +DA+LKHLVAPR+ MGP+EAYFCSKFFNTLH IEAP FN  V
Sbjct: 1209 VLGHRADETHTTLLQAMEFVCSKAWIKSKCPAIKTLLTTYGLEPRVVFHIWRPVINENLIKCWFPKAGTKTEREQRDEAIAKRFIGELEASITELSIVPECSPLTSKLILIFWALSLPDVYIPTKKYAQVVTNMNEAKRRADSKLQQAEEEGVTMSKAERSRYMLDRKTSPAVAAKLETEKGSQSAHVKRVKNKLREIKASLFAAKDKHETG------AETIDAVLKHLVAPRMGMGPEEAYFCSKFFNTLHAIEAPNFNSLV 1465          
BLAST of mRNA_H-elongata_contig49727.12182.1 vs. uniprot
Match: A0A0U9HNT5_KLENI (THO complex subunit 2 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HNT5_KLENI)

HSP 1 Score: 64.7 bits (156), Expect = 4.080e-8
Identity = 77/302 (25.50%), Postives = 126/302 (41.72%), Query Frame = 0
Query:    7 DEIHTTMLQVSEFVCS---KAWIRNKCPSIEALMRTYKLKPKVSFHIWRPVINENLMKHWFPKPGTKTEKEQK-------------EEADANRFIQEL---------------EASIPELIPGLSPLTAKLFLIFWALSLSDVYIPTKKYGQVVSNMNKTKRRAEIKLAQAERGEVTLTKAEKTRYTYEKKTCPGLASKLEVEKATQSQHVKKVKN---------KLREIKA--------TLFXXXXXXXVGDGRRMDTE-----AVDAILKHLVAPRLSMGPDEAYFCSKFFNTLHLIEAP 255
            D +H   +Q+ E++     +A   +  P +  L+ +Y L+P+++  I+RPV+ +  +K   P P      E               E AD N+   +L                   P     +SPL   L+L FW+LSLSD+Y+P  +Y   +S + K ++ A+    +AE    +LT +++ +   E K      + LE E A Q + V+ VK          ++R  KA         L          DGR  D       A+    +  + PR+++   +A FC  F N LH I AP
Sbjct:  870 DMLHKIFIQLYEYLVKAVPEAEFASLVPPLNELVHSYHLEPELAMLIYRPVLQDLKLK---PAPKLARPSEANGDALEEAVTDWTTEPADDNQLAVKLGDVTLTWKSLLGTVQSFHAPATWHIMSPL---LYLRFWSLSLSDIYVPKARY---LSEIEKVQKAAKDAAKEAE----SLTGSDQKKRDREAKFLRDTVTNLENELAAQEKTVEAVKQILIREKDQWQIRHKKAGDRASTERVLSDQACGDRAADGRPTDDPPEKRTAISDFFQTCIFPRVTLSLPDALFCFHFLNLLHEINAP 1158          
BLAST of mRNA_H-elongata_contig49727.12182.1 vs. uniprot
Match: A0A1W0WG42_HYPDU (THO complex subunit 2 n=1 Tax=Hypsibius dujardini TaxID=232323 RepID=A0A1W0WG42_HYPDU)

HSP 1 Score: 62.0 bits (149), Expect = 3.180e-7
Identity = 65/269 (24.16%), Postives = 115/269 (42.75%), Query Frame = 0
Query:    7 DEIHTTMLQVSEFVCS---KAWIRNKCPSIEALMRTYKLKPKVSFHIWRPVI-------NENLMKHWFPKPGTKTEKEQK--EEADANRFIQELEASIPELIPGLSP-----LTAKLFLIFWALSLSDVYIPTKKYGQVVSNMNKTKRRAEIKLAQAERGEVTLTKAEKTRYTYEKKTCPGLASKLEVEKATQSQHVKKVKNKLREIKATLFXXXXXXXVGDGRRMDTEAVDAILKHLVAPRLSMGPDEAYFCSKFFNTLHLIEAPQFN 258
            D  H T++Q   F+ +   K+      PS+E L+R Y +  + S  + R V         E+  K      GT   +  K  +E  +  F   + + +  + P ++      ++ + +++FW LSL D+Y+P   Y Q V  +       ++  A A+ G+  L K  K R   E      +  KL+ E + Q QHV+ ++N L E K   F           +   ++ V   L+  V PR +    +A F + F ++LH +    F+
Sbjct:  804 DMCHDTLVQYGTFLATNLTKSEYEKTFPSLEVLIRVYNIPFETSIFLLRSVYWNEITTEIEHFKKQEKIPDGTLNGEHFKLVQEKFSKTFDNVITSVVDLITPVMTQAPMEDISLRFYVLFWFLSLYDLYVPVAVYEQEVEKLQ------QVVAAAADPGDEDLGKEIKRRK--ESTRAQIVIEKLQEEMSVQKQHVQMLRNHLAEEKDRWFQ--------SAKSNKSDVVSQFLQMCVLPRSTFSTIDALFSAHFISSLHELRTQNFS 1056          
BLAST of mRNA_H-elongata_contig49727.12182.1 vs. uniprot
Match: F1KR79_ASCSU (THO complex subunit 2 n=1 Tax=Ascaris suum TaxID=6253 RepID=F1KR79_ASCSU)

HSP 1 Score: 60.1 bits (144), Expect = 1.370e-6
Identity = 63/261 (24.14%), Postives = 111/261 (42.53%), Query Frame = 0
Query:    7 DEIHTTMLQVSEFVCSKAW---IRNKCPSIEALMRTYKLKPKVSFHIWRPVINENLMKHWFPKPGTKTEKE-QKEEADANRF-----------IQELEASIPELIPGL--SPLTAKLFLIFWALSLSDVYIPTKKYGQVVSNMNKTKRRAEIKLAQAERGEVTLTKAEKTRYTYEKKTCPGLASKLEVEKATQSQHVKKVKNKLREIKATLFXXXXXXXVGDGRRMDTEAVDAILKHLVAPRLSMGPDEAYFCSKFFNTLH 250
            D+    ++Q   F+ S        ++  S+  L+  Y L    +F + RP     +   +        E +  K + D NR            + +LE  +  L+P    + ++AK+F+IFWAL++ D+ +P   Y + +  +    RR+   LA+        T+  KT+ + E++   G+  KL  E   Q +HV++V + LR  K  LF        G         +   L+H V PR      +A +C+ F + LH
Sbjct:  761 DQCQEALVQFGSFIRSNLRQDEYSSRIMSVPELISRYYLSTDAAFFLCRPSFMHRVYNAFDKCRRALRESDGSKTKLDTNRKFAIFKSAFDEELSDLEQKLVHLLPEALWADISAKVFVIFWALTMYDISVPKAAYEREIQRV----RRSFASLAEN-------TEISKTKRSKEEEQLRGVEKKLSDELKRQGEHVERVLSILRHDKELLFADCAPNMRG-------MQMARFLQHCVLPRAIFTDIDAVYCAHFVHLLH 1003          
BLAST of mRNA_H-elongata_contig49727.12182.1 vs. uniprot
Match: A0A158R5S7_9BILA (THO complex subunit 2 n=1 Tax=Syphacia muris TaxID=451379 RepID=A0A158R5S7_9BILA)

HSP 1 Score: 58.9 bits (141), Expect = 3.300e-6
Identity = 69/264 (26.14%), Postives = 116/264 (43.94%), Query Frame = 0
Query:    7 DEIHTTMLQVSEFVCSKAWIRN-----KCPSIEALMRTYKLKPKVSFHIWRPV-------INENLMKHWFPKPGTKTEKE--QKEEADANRFIQ---ELEASIPELIPGLS--PLTAKLFLIFWALSLSDVYIPTKKYGQVVSNMNKTKRRAEIKLAQAERGEVTLTKAEKTRYTYEKKTCPGLASKLEVEKATQSQHVKKVKNKLREIKATLFXXXXXXXVGDGRRMDTEAVDAILKHLVAPRLSMGPDEAYFCSKFFNTLHL 251
            D+   T++Q   F+ S   IRN     + PS+  L+  + L    +F + RP        + +   K      G+K + +  QK E     F +   ELE +   L+P ++   ++ K+F+IFW L+L D+YIP   Y   +  + K+          A +  V L+K   TR   E++   G   KL  E   Q++HV+++ N LR  K   F        G         +   L+H + PR      +A +C+KF + +H+
Sbjct:  764 DKCQETLVQFGSFLRSN--IRNEEYLNRMPSLCELISRFHLTTDAAFFLSRPTFMPRIYSLFDKARKALRDPDGSKVKLDGTQKFELFKKCFDEVFGELEKTAVPLLPEVAWTDISPKVFMIFWGLTLYDIYIPKGGYENEMVKVRKS--------ISALQENVDLSK---TRRAKEEEQLKGTEKKLGEELKRQTEHVERILNILRIDKERFFAECHPKLRG-------MQMAHFLQHCILPRAVFTDVDAAYCAKFVHLMHV 1007          
BLAST of mRNA_H-elongata_contig49727.12182.1 vs. uniprot
Match: A0A0F4ZKP1_9PEZI (THO complex subunit 2 n=1 Tax=Thielaviopsis punctulata TaxID=72032 RepID=A0A0F4ZKP1_9PEZI)

HSP 1 Score: 58.9 bits (141), Expect = 3.450e-6
Identity = 64/261 (24.52%), Postives = 108/261 (41.38%), Query Frame = 0
Query:    7 DEIHTTMLQVSEFVC---SKAWIRNKCPSIEALMRTYKLKPKVSFHIWRPVINENLMKHWFPKPGTKTEKE-QKEEADANRFIQELEASIPELIPGL-------------SPLTAKLFLIFWALSLSDVYIPTKKYGQVVSNMNKTKRRAEIKLAQAERGEVTLTKAEKTRYTYEKKTCPGLASKLEVEKATQSQHVKKVKNKLREIKATLFXXXXXXXVGDGRRMDTEAVDAILKHLVAPRLSMGPDEAYFCSKFFNTLH 250
            D+ H  ++Q  +F+     +    +  PSI  LM+ YKL   ++F + RP +  ++     PKP    E +   + AD ++ +      + E +  L             S +T + F  FWAL +SDVY+P  +Y +  S       RA  +  +  +    +T A  ++   + K    LAS+L  EK        K++  L E     F        G        A DA+++  + PRL + P +A F  +    LH
Sbjct: 1110 DDSHQVLIQYLDFLTYNLPRESFVSLTPSIGVLMKKYKLDASLAFMVGRPGLLFDI-----PKPDFSPESDGDVDMADVSKALPGSNNVVYETLKPLIFDVETAKEPDFWSCITPEFFTTFWALQMSDVYVPENRYEKEYS-------RAVSQSRELSKDRSDMTHAGISKRAEKMKAVTDLASQLSAEKKQHKLAFIKIRQGLIERVNCWFGGSVTAPHG--------ASDALIEQCLLPRLLLSPADADFAHRILRFLH 1350          
BLAST of mRNA_H-elongata_contig49727.12182.1 vs. uniprot
Match: A0A0N4V0A7_ENTVE (THO complex subunit 2 n=1 Tax=Enterobius vermicularis TaxID=51028 RepID=A0A0N4V0A7_ENTVE)

HSP 1 Score: 58.5 bits (140), Expect = 4.400e-6
Identity = 72/282 (25.53%), Postives = 120/282 (42.55%), Query Frame = 0
Query:    7 DEIHTTMLQVSEFVCSKAWIRN-----KCPSIEALMRTYKLKPKVSFHIWRPVIN-------ENLMKHWFPKPGTKT--EKEQKEEADANRFIQ---ELEASIPELIPGLS--PLTAKLFLIFWALSLSDVYIPTKKYGQVVSNMNKTKRRAEIKLAQAERGEVTLTKAEKTRYTYEKKTCPGLASKLEVEKATQSQHVKKVKNKLREIKATLFXXXXXXXVGDGRRMDTEAVDAI-------------------LKHLVAPRLSMGPDEAYFCSKFFNTLH 250
            D+   T++Q   F+ S   IRN     + P +  L+  + L    +F++ RP          +   K      G+KT  +  QK E    RF +   ELE +I  L+P ++   +++K+F+IFW L+L D+YIP   Y   +  + K        L    +  + L+K   TR   E++    L  KL  E   Q++HV++V   L+  K +LF          G  +   A  ++                   L+H + PR      +A +C+KF + LH
Sbjct:  754 DKCQETLVQFGSFLRSN--IRNEEYSSRMPPLTELISRFHLPTDAAFYLSRPTFMPRVYTCFDKTRKAMREPDGSKTKLDNSQKFELFKKRFNEIFGELEQAIVPLLPEVAWTDISSKVFMIFWGLTLYDIYIPKGAYENEMLRVKK--------LMAGLQDNIELSK---TRRAKEEEQLRTLEKKLSDELKRQTEHVERVLAILKLEKESLFSECHPSTFVAGVAVVIIASVSVSHSENVFLLELRGMQMAHFLQHCILPRAVFTDVDAAYCAKFVHLLH 1022          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49727.12182.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LD24_ECTSI4.830e-10466.54THO complex subunit 2 n=2 Tax=Ectocarpus TaxID=287... [more]
A0A0U9HNT5_KLENI4.080e-825.50THO complex subunit 2 n=1 Tax=Klebsormidium nitens... [more]
A0A1W0WG42_HYPDU3.180e-724.16THO complex subunit 2 n=1 Tax=Hypsibius dujardini ... [more]
F1KR79_ASCSU1.370e-624.14THO complex subunit 2 n=1 Tax=Ascaris suum TaxID=6... [more]
A0A158R5S7_9BILA3.300e-626.14THO complex subunit 2 n=1 Tax=Syphacia muris TaxID... [more]
A0A0F4ZKP1_9PEZI3.450e-624.52THO complex subunit 2 n=1 Tax=Thielaviopsis punctu... [more]
A0A0N4V0A7_ENTVE4.400e-625.53THO complex subunit 2 n=1 Tax=Enterobius vermicula... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 129..149
NoneNo IPR availablePANTHERPTHR21597:SF0THO COMPLEX SUBUNIT 2coord: 2..258
IPR021418THO complex, subunitTHOC2, C-terminalPFAMPF11262Tho2coord: 102..258
e-value: 1.3E-28
score: 100.1
IPR040007THO complex subunit 2PANTHERPTHR21597THO2 PROTEINcoord: 2..258

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49727contigH-elongata_contig49727:257..3890 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49727.12182.1mRNA_H-elongata_contig49727.12182.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig49727 257..3890 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig49727.12182.1 ID=prot_H-elongata_contig49727.12182.1|Name=mRNA_H-elongata_contig49727.12182.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=261bp
VLAHRSDEIHTTMLQVSEFVCSKAWIRNKCPSIEALMRTYKLKPKVSFHI
WRPVINENLMKHWFPKPGTKTEKEQKEEADANRFIQELEASIPELIPGLS
PLTAKLFLIFWALSLSDVYIPTKKYGQVVSNMNKTKRRAEIKLAQAERGE
VTLTKAEKTRYTYEKKTCPGLASKLEVEKATQSQHVKKVKNKLREIKATL
FTVFTVFTVGDGRRMDTEAVDAILKHLVAPRLSMGPDEAYFCSKFFNTLH
LIEAPQFNRYV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021418THO_THOC2_C
IPR040007Tho2