prot_H-elongata_contig49684.12176.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig49684.12176.1
Unique Nameprot_H-elongata_contig49684.12176.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length61
Homology
[Close]
BLAST of mRNA_H-elongata_contig49684.12176.1 vs. uniprot
Match: A0A388K4Z0_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K4Z0_CHABU)

HSP 1 Score: 57.0 bits (136), Expect = 5.910e-8
Identity = 22/60 (36.67%), Postives = 38/60 (63.33%), Query Frame = 0 
Query:    3 CDAHALDLLMKDIAKMPWCAGIIKRNLTVVNWVKNHHATSAVLLDKTD-YPLINPNATRF 61
            C AH   LL++DI+K+ W  G +KR  T++ +++NHH+T ++++   D   L+ P   RF
Sbjct:  410 CAAHCCSLLLRDISKLDWVTGTVKRGHTIIKFIRNHHSTHSLMMSMDDSLALLRPTEVRF 469
[Close]
BLAST of mRNA_H-elongata_contig49684.12176.1 vs. uniprot
Match: A0A388M8Q2_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388M8Q2_CHABU)

HSP 1 Score: 55.5 bits (132), Expect = 2.060e-7
Identity = 24/60 (40.00%), Postives = 36/60 (60.00%), Query Frame = 0 
Query:    3 CDAHALDLLMKDIAKMPWCAGIIKRNLTVVNWVKNHHATSAVLLDKTD-YPLINPNATRF 61
            C AH   LL+KD+A + W  G +K   T+VN+++NHHAT  +++   D   L+ P   RF
Sbjct:  320 CGAHCCSLLLKDLANLSWIKGTVKTANTIVNFIRNHHATHDLMMTVDDSLSLLRPTKVRF 379
[Close]
BLAST of mRNA_H-elongata_contig49684.12176.1 vs. uniprot
Match: A0A388LZB2_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LZB2_CHABU)

HSP 1 Score: 55.1 bits (131), Expect = 2.810e-7
Identity = 22/60 (36.67%), Postives = 37/60 (61.67%), Query Frame = 0 
Query:    3 CDAHALDLLMKDIAKMPWCAGIIKRNLTVVNWVKNHHATSAVLLD-KTDYPLINPNATRF 61
            C AH   LL++DI+K+ W  G +KR  T+V +++NHH T++ ++   +   L+ P   RF
Sbjct:  406 CAAHCCSLLLRDISKLDWVKGTVKRGHTIVKFIRNHHTTNSFMMSLDSSLTLLRPTEVRF 465
[Close]
BLAST of mRNA_H-elongata_contig49684.12176.1 vs. uniprot
Match: A0A388L9Q9_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L9Q9_CHABU)

HSP 1 Score: 55.1 bits (131), Expect = 2.820e-7
Identity = 22/60 (36.67%), Postives = 37/60 (61.67%), Query Frame = 0 
Query:    3 CDAHALDLLMKDIAKMPWCAGIIKRNLTVVNWVKNHHATSAVLLD-KTDYPLINPNATRF 61
            C AH   LL++DI+K+ W  G +KR  T+V +++NHH T++ ++   +   L+ P   RF
Sbjct:  325 CAAHCCSLLLRDISKLDWVKGTVKRGHTIVKFIRNHHTTNSFMMSLDSSLTLLRPTEVRF 384
[Close]
BLAST of mRNA_H-elongata_contig49684.12176.1 vs. uniprot
Match: A0A388LAH1_CHABU (RNA-directed DNA polymerase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LAH1_CHABU)

HSP 1 Score: 55.1 bits (131), Expect = 2.840e-7
Identity = 22/60 (36.67%), Postives = 37/60 (61.67%), Query Frame = 0 
Query:    3 CDAHALDLLMKDIAKMPWCAGIIKRNLTVVNWVKNHHATSAVLLD-KTDYPLINPNATRF 61
            C AH   LL++DI+K+ W  G +KR  T+V +++NHH T++ ++   +   L+ P   RF
Sbjct:  113 CAAHCCSLLLRDISKLDWVKGTVKRGHTIVKFIRNHHTTNSFMMSLDSSLTLLQPTEVRF 172
[Close]
BLAST of mRNA_H-elongata_contig49684.12176.1 vs. uniprot
Match: A0A388JQK4_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JQK4_CHABU)

HSP 1 Score: 54.3 bits (129), Expect = 5.270e-7
Identity = 22/60 (36.67%), Postives = 37/60 (61.67%), Query Frame = 0 
Query:    3 CDAHALDLLMKDIAKMPWCAGIIKRNLTVVNWVKNHHATSAVLLD-KTDYPLINPNATRF 61
            C AH   LL++DI+K+ W  G +KR  T+V +++NHH T++ ++   +   L+ P   RF
Sbjct:  363 CAAHCRSLLLRDISKLDWVKGTVKRGHTIVKFIRNHHTTNSFMMSLDSSLMLLRPTEVRF 422
[Close]
BLAST of mRNA_H-elongata_contig49684.12176.1 vs. uniprot
Match: A0A388L5J5_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L5J5_CHABU)

HSP 1 Score: 54.3 bits (129), Expect = 5.270e-7
Identity = 22/60 (36.67%), Postives = 37/60 (61.67%), Query Frame = 0 
Query:    3 CDAHALDLLMKDIAKMPWCAGIIKRNLTVVNWVKNHHATSAVLLDKTD-YPLINPNATRF 61
            C  H   LL++DI+K+ W  G +KR+ T+V +++NHH T ++++   D   L+ P   RF
Sbjct:  259 CAVHCCSLLLRDISKLDWMKGTVKRSHTIVKFIRNHHCTHSLMMSLDDSLLLLRPTEVRF 318
[Close]
BLAST of mRNA_H-elongata_contig49684.12176.1 vs. uniprot
Match: A0A388L3T3_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L3T3_CHABU)

HSP 1 Score: 54.3 bits (129), Expect = 5.300e-7
Identity = 22/60 (36.67%), Postives = 37/60 (61.67%), Query Frame = 0 
Query:    3 CDAHALDLLMKDIAKMPWCAGIIKRNLTVVNWVKNHHATSAVLLD-KTDYPLINPNATRF 61
            C AH   LL++DI+K+ W  G +KR  T+V +++NHH T++ ++   +   L+ P   RF
Sbjct: 1333 CAAHCCSLLLRDISKLDWVKGTVKRGHTIVKFIRNHHMTNSFMMSLDSSLMLLRPTEVRF 1392
[Close]
BLAST of mRNA_H-elongata_contig49684.12176.1 vs. uniprot
Match: A0A388JLR0_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JLR0_CHABU)

HSP 1 Score: 53.1 bits (126), Expect = 1.340e-6
Identity = 22/60 (36.67%), Postives = 36/60 (60.00%), Query Frame = 0 
Query:    3 CDAHALDLLMKDIAKMPWCAGIIKRNLTVVNWVKNHHATSAVLLDKTD-YPLINPNATRF 61
            C  H   LL++DI+K+ W  G +KR+ T+V + +NHH T ++++   D   L+ P   RF
Sbjct:  200 CVEHCCSLLLRDISKLDWIKGTVKRSHTIVKFTRNHHCTHSLMMSLDDSLSLLRPTEVRF 259
[Close]
BLAST of mRNA_H-elongata_contig49684.12176.1 vs. uniprot
Match: A0A388JVU7_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JVU7_CHABU)

HSP 1 Score: 53.1 bits (126), Expect = 1.350e-6
Identity = 23/63 (36.51%), Postives = 36/63 (57.14%), Query Frame = 0 
Query:    3 CDAHALDLLMKDIAKMPWCAGIIKRNLTVVNWVKNHHATSAVLLD----KTDYPLINPNATRF 61
            C AH   LL++DI K+ W  G+IKR+ T+V +++NHH T ++++          L  P   RF
Sbjct:  183 CAAHCCSLLLRDIRKLDWIKGMIKRSHTIVKFIRNHHCTHSLMMSLMSLDNSLSLTRPTEVRF 245
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49684.12176.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A388K4Z0_CHABU5.910e-836.67Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A388M8Q2_CHABU2.060e-740.00Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A388LZB2_CHABU2.810e-736.67DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
A0A388L9Q9_CHABU2.820e-736.67DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
A0A388LAH1_CHABU2.840e-736.67RNA-directed DNA polymerase n=1 Tax=Chara braunii ... [more]
A0A388JQK4_CHABU5.270e-736.67Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A388L5J5_CHABU5.270e-736.67Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A388L3T3_CHABU5.300e-736.67DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
A0A388JLR0_CHABU1.340e-636.67Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A388JVU7_CHABU1.350e-636.51DUF659 domain-containing protein n=1 Tax=Chara bra... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 3..61

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49684contigH-elongata_contig49684:626..808 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49684.12176.1mRNA_H-elongata_contig49684.12176.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig49684 605..808 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig49684.12176.1 ID=prot_H-elongata_contig49684.12176.1|Name=mRNA_H-elongata_contig49684.12176.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
MKCDAHALDLLMKDIAKMPWCAGIIKRNLTVVNWVKNHHATSAVLLDKTD
YPLINPNATRF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf