mRNA_H-elongata_contig49684.12176.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49684.12176.1
Unique NamemRNA_H-elongata_contig49684.12176.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig49684.12176.1 vs. uniprot
Match: A0A388M8Q2_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388M8Q2_CHABU)

HSP 1 Score: 57.8 bits (138), Expect = 4.240e-8
Identity = 25/69 (36.23%), Postives = 41/69 (59.42%), Query Frame = 1 
Query:    1 NTSSIIGMKCDAHALDLLMKDIAKMPWCAGIIKRNLTVVNWVKNHHATSAVLLDKTD-YPLINPNATRF 204
            + + I+ + C AH   LL+KD+A + W  G +K   T+VN+++NHHAT  +++   D   L+ P   RF
Sbjct:  311 DVARILWVPCGAHCCSLLLKDLANLSWIKGTVKTANTIVNFIRNHHATHDLMMTVDDSLSLLRPTKVRF 379
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BLAST of mRNA_H-elongata_contig49684.12176.1 vs. uniprot
Match: A0A388K4Z0_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K4Z0_CHABU)

HSP 1 Score: 57.0 bits (136), Expect = 7.940e-8
Identity = 22/60 (36.67%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:   28 CDAHALDLLMKDIAKMPWCAGIIKRNLTVVNWVKNHHATSAVLLDKTD-YPLINPNATRF 204
            C AH   LL++DI+K+ W  G +KR  T++ +++NHH+T ++++   D   L+ P   RF
Sbjct:  410 CAAHCCSLLLRDISKLDWVTGTVKRGHTIIKFIRNHHSTHSLMMSMDDSLALLRPTEVRF 469
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BLAST of mRNA_H-elongata_contig49684.12176.1 vs. uniprot
Match: A0A388L5J5_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L5J5_CHABU)

HSP 1 Score: 55.5 bits (132), Expect = 2.770e-7
Identity = 24/67 (35.82%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:    7 SSIIGMKCDAHALDLLMKDIAKMPWCAGIIKRNLTVVNWVKNHHATSAVLLDKTD-YPLINPNATRF 204
            S I  + C  H   LL++DI+K+ W  G +KR+ T+V +++NHH T ++++   D   L+ P   RF
Sbjct:  252 SRIPWVPCAVHCCSLLLRDISKLDWMKGTVKRSHTIVKFIRNHHCTHSLMMSLDDSLLLLRPTEVRF 318
[Close]
BLAST of mRNA_H-elongata_contig49684.12176.1 vs. uniprot
Match: A0A388LZB2_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LZB2_CHABU)

HSP 1 Score: 55.1 bits (131), Expect = 3.760e-7
Identity = 22/60 (36.67%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:   28 CDAHALDLLMKDIAKMPWCAGIIKRNLTVVNWVKNHHATSAVLLD-KTDYPLINPNATRF 204
            C AH   LL++DI+K+ W  G +KR  T+V +++NHH T++ ++   +   L+ P   RF
Sbjct:  406 CAAHCCSLLLRDISKLDWVKGTVKRGHTIVKFIRNHHTTNSFMMSLDSSLTLLRPTEVRF 465
[Close]
BLAST of mRNA_H-elongata_contig49684.12176.1 vs. uniprot
Match: A0A388L9Q9_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L9Q9_CHABU)

HSP 1 Score: 55.1 bits (131), Expect = 3.790e-7
Identity = 22/60 (36.67%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:   28 CDAHALDLLMKDIAKMPWCAGIIKRNLTVVNWVKNHHATSAVLLD-KTDYPLINPNATRF 204
            C AH   LL++DI+K+ W  G +KR  T+V +++NHH T++ ++   +   L+ P   RF
Sbjct:  325 CAAHCCSLLLRDISKLDWVKGTVKRGHTIVKFIRNHHTTNSFMMSLDSSLTLLRPTEVRF 384
[Close]
BLAST of mRNA_H-elongata_contig49684.12176.1 vs. uniprot
Match: A0A388LAH1_CHABU (RNA-directed DNA polymerase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LAH1_CHABU)

HSP 1 Score: 55.1 bits (131), Expect = 3.830e-7
Identity = 22/60 (36.67%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:   28 CDAHALDLLMKDIAKMPWCAGIIKRNLTVVNWVKNHHATSAVLLD-KTDYPLINPNATRF 204
            C AH   LL++DI+K+ W  G +KR  T+V +++NHH T++ ++   +   L+ P   RF
Sbjct:  113 CAAHCCSLLLRDISKLDWVKGTVKRGHTIVKFIRNHHTTNSFMMSLDSSLTLLQPTEVRF 172
[Close]
BLAST of mRNA_H-elongata_contig49684.12176.1 vs. uniprot
Match: A0A388JLR0_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JLR0_CHABU)

HSP 1 Score: 54.3 bits (129), Expect = 7.020e-7
Identity = 24/67 (35.82%), Postives = 39/67 (58.21%), Query Frame = 1 
Query:    7 SSIIGMKCDAHALDLLMKDIAKMPWCAGIIKRNLTVVNWVKNHHATSAVLLDKTD-YPLINPNATRF 204
            S I  + C  H   LL++DI+K+ W  G +KR+ T+V + +NHH T ++++   D   L+ P   RF
Sbjct:  193 SRIPWVPCVEHCCSLLLRDISKLDWIKGTVKRSHTIVKFTRNHHCTHSLMMSLDDSLSLLRPTEVRF 259
[Close]
BLAST of mRNA_H-elongata_contig49684.12176.1 vs. uniprot
Match: A0A388JVU7_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JVU7_CHABU)

HSP 1 Score: 54.3 bits (129), Expect = 7.070e-7
Identity = 25/70 (35.71%), Postives = 39/70 (55.71%), Query Frame = 1 
Query:    7 SSIIGMKCDAHALDLLMKDIAKMPWCAGIIKRNLTVVNWVKNHHATSAVLLD----KTDYPLINPNATRF 204
            S I  + C AH   LL++DI K+ W  G+IKR+ T+V +++NHH T ++++          L  P   RF
Sbjct:  176 SRIPWVPCAAHCCSLLLRDIRKLDWIKGMIKRSHTIVKFIRNHHCTHSLMMSLMSLDNSLSLTRPTEVRF 245
[Close]
BLAST of mRNA_H-elongata_contig49684.12176.1 vs. uniprot
Match: A0A388JQK4_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JQK4_CHABU)

HSP 1 Score: 54.3 bits (129), Expect = 7.070e-7
Identity = 22/60 (36.67%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:   28 CDAHALDLLMKDIAKMPWCAGIIKRNLTVVNWVKNHHATSAVLLD-KTDYPLINPNATRF 204
            C AH   LL++DI+K+ W  G +KR  T+V +++NHH T++ ++   +   L+ P   RF
Sbjct:  363 CAAHCRSLLLRDISKLDWVKGTVKRGHTIVKFIRNHHTTNSFMMSLDSSLMLLRPTEVRF 422
[Close]
BLAST of mRNA_H-elongata_contig49684.12176.1 vs. uniprot
Match: A0A388L3T3_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L3T3_CHABU)

HSP 1 Score: 54.3 bits (129), Expect = 7.130e-7
Identity = 22/60 (36.67%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:   28 CDAHALDLLMKDIAKMPWCAGIIKRNLTVVNWVKNHHATSAVLLD-KTDYPLINPNATRF 204
            C AH   LL++DI+K+ W  G +KR  T+V +++NHH T++ ++   +   L+ P   RF
Sbjct: 1333 CAAHCCSLLLRDISKLDWVKGTVKRGHTIVKFIRNHHMTNSFMMSLDSSLMLLRPTEVRF 1392
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49684.12176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A388M8Q2_CHABU4.240e-836.23Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A388K4Z0_CHABU7.940e-836.67Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A388L5J5_CHABU2.770e-735.82Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A388LZB2_CHABU3.760e-736.67DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
A0A388L9Q9_CHABU3.790e-736.67DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
A0A388LAH1_CHABU3.830e-736.67RNA-directed DNA polymerase n=1 Tax=Chara braunii ... [more]
A0A388JLR0_CHABU7.020e-735.82Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A388JVU7_CHABU7.070e-735.71DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
A0A388JQK4_CHABU7.070e-736.67Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A388L3T3_CHABU7.130e-736.67DUF659 domain-containing protein n=1 Tax=Chara bra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49684contigH-elongata_contig49684:605..808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size183
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930818.1729403-UTR-H-elongata_contig49684:604..6251622930818.1729403-UTR-H-elongata_contig49684:604..625Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49684 605..625 +
1691679583.250945-UTR-H-elongata_contig49684:604..6251691679583.250945-UTR-H-elongata_contig49684:604..625Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49684 605..625 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930818.1921892-CDS-H-elongata_contig49684:625..8081622930818.1921892-CDS-H-elongata_contig49684:625..808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49684 626..808 +
1691679583.2677872-CDS-H-elongata_contig49684:625..8081691679583.2677872-CDS-H-elongata_contig49684:625..808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49684 626..808 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49684.12176.1prot_H-elongata_contig49684.12176.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49684 626..808 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49684.12176.1

>prot_H-elongata_contig49684.12176.1 ID=prot_H-elongata_contig49684.12176.1|Name=mRNA_H-elongata_contig49684.12176.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
MKCDAHALDLLMKDIAKMPWCAGIIKRNLTVVNWVKNHHATSAVLLDKTD
YPLINPNATRF
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mRNA from alignment at H-elongata_contig49684:605..808+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49684.12176.1 ID=mRNA_H-elongata_contig49684.12176.1|Name=mRNA_H-elongata_contig49684.12176.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at H-elongata_contig49684:605..808+ (Himanthalia elongata Himel1 dioecious)
AACACGTCCAGCATTATAGGCATGAAGTGTGATGCGCATGCGTTAGACCT
GCTCATGAAGGACATCGCCAAGATGCCGTGGTGCGCCGGCATCATCAAGC
GCAACCTCACAGTTGTGAATTGGGTCAAGAACCATCACGCTACGAGCGCG
GTCCTACTCGACAAGACCGATTACCCACTCATCAATCCCAACGCAACCCG
ATTC
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Coding sequence (CDS) from alignment at H-elongata_contig49684:605..808+

>mRNA_H-elongata_contig49684.12176.1 ID=mRNA_H-elongata_contig49684.12176.1|Name=mRNA_H-elongata_contig49684.12176.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig49684:605..808+ (Himanthalia elongata Himel1 dioecious)
ATGAAGTGTGATGCGCATGCGTTAGACCTGCTCATGAAGGACATCGCCAA
GATGCCGTGGTGCGCCGGCATCATCAAGCGCAACCTCACAGTTGTGAATT
GGGTCAAGAACCATCACGCTACGAGCGCGGTCCTACTCGACAAGACCGAT
TACCCACTCATCAATCCCAACGCAACCCGATTCATGAAGTGTGATGCGCA
TGCGTTAGACCTGCTCATGAAGGACATCGCCAAGATGCCGTGGTGCGCCG
GCATCATCAAGCGCAACCTCACAGTTGTGAATTGGGTCAAGAACCATCAC
GCTACGAGCGCGGTCCTACTCGACAAGACCGATTACCCACTCATCAATCC
CAACGCAACCCGATTC
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