prot_H-elongata_contig4897.12068.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig4897.12068.1
Unique Nameprot_H-elongata_contig4897.12068.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length250
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4897.12068.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 157..180
e-value: 2.5
score: 17.1
coord: 109..132
e-value: 33.0
score: 9.0
coord: 133..156
e-value: 0.0046
score: 26.2
coord: 181..205
e-value: 95.0
score: 5.2
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 138..193
e-value: 4.9E-10
score: 39.0
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 159..180
score: 5.494
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 135..156
score: 7.05
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 183..205
score: 5.918
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 12..224
e-value: 1.3E-31
score: 111.6
NoneNo IPR availablePANTHERPTHR45842FAMILY NOT NAMEDcoord: 72..155
coord: 98..193
NoneNo IPR availablePANTHERPTHR45842:SF3LEUCINE-RICH REPEAT AND FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN 4coord: 72..155
coord: 98..193
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 54..221

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4897contigH-elongata_contig4897:6866..11169 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4897.12068.1mRNA_H-elongata_contig4897.12068.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig4897 6154..11186 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig4897.12068.1 ID=prot_H-elongata_contig4897.12068.1|Name=mRNA_H-elongata_contig4897.12068.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=250bp
MCGTEAADPTPCLDSTSSSYRCSYDGSTTALDLTFDSVYCEIDNDQLDYV
SACLDDFGRTNIVEKISLISQKHINNLPPDIFSGLTNAEWMVLSGQDFTE
IPKEVFSGLSSMNNLTIAFTNLETLPKGIFDDLVALETLDLYGNKIYSLA
EGLFEMLVNVKQLWLTGNELTTLNVNAFNDLISLEELYLQHNDGLQCLPE
STATTIRLDSEDIRNGTCTCDEPEGGPPLCADGITCIEATEGYQCWFLW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf