mRNA_H-elongata_contig4897.12068.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4897.12068.1
Unique NamemRNA_H-elongata_contig4897.12068.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4897.12068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4897contigH-elongata_contig4897:6154..11186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons11
Model size1479
Cds size750
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930805.3849738-UTR-H-elongata_contig4897:6153..68651622930805.3849738-UTR-H-elongata_contig4897:6153..6865Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4897 6154..6865 -
1691679577.8878102-UTR-H-elongata_contig4897:6153..68651691679577.8878102-UTR-H-elongata_contig4897:6153..6865Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4897 6154..6865 -
1622930805.5696979-UTR-H-elongata_contig4897:11169..111861622930805.5696979-UTR-H-elongata_contig4897:11169..11186Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4897 11170..11186 -
1691679578.024058-UTR-H-elongata_contig4897:11169..111861691679578.024058-UTR-H-elongata_contig4897:11169..11186Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4897 11170..11186 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930805.3963935-CDS-H-elongata_contig4897:6865..68791622930805.3963935-CDS-H-elongata_contig4897:6865..6879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4897 6866..6879 -
1691679577.8955255-CDS-H-elongata_contig4897:6865..68791691679577.8955255-CDS-H-elongata_contig4897:6865..6879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4897 6866..6879 -
1622930805.4078355-CDS-H-elongata_contig4897:7237..73181622930805.4078355-CDS-H-elongata_contig4897:7237..7318Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4897 7238..7318 -
1691679577.9034624-CDS-H-elongata_contig4897:7237..73181691679577.9034624-CDS-H-elongata_contig4897:7237..7318Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4897 7238..7318 -
1622930805.4255512-CDS-H-elongata_contig4897:7831..78841622930805.4255512-CDS-H-elongata_contig4897:7831..7884Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4897 7832..7884 -
1691679577.924101-CDS-H-elongata_contig4897:7831..78841691679577.924101-CDS-H-elongata_contig4897:7831..7884Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4897 7832..7884 -
1622930805.4438405-CDS-H-elongata_contig4897:8232..82741622930805.4438405-CDS-H-elongata_contig4897:8232..8274Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4897 8233..8274 -
1691679577.9356866-CDS-H-elongata_contig4897:8232..82741691679577.9356866-CDS-H-elongata_contig4897:8232..8274Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4897 8233..8274 -
1622930805.4629726-CDS-H-elongata_contig4897:8543..86151622930805.4629726-CDS-H-elongata_contig4897:8543..8615Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4897 8544..8615 -
1691679577.944486-CDS-H-elongata_contig4897:8543..86151691679577.944486-CDS-H-elongata_contig4897:8543..8615Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4897 8544..8615 -
1622930805.47617-CDS-H-elongata_contig4897:8784..88561622930805.47617-CDS-H-elongata_contig4897:8784..8856Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4897 8785..8856 -
1691679577.9537342-CDS-H-elongata_contig4897:8784..88561691679577.9537342-CDS-H-elongata_contig4897:8784..8856Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4897 8785..8856 -
1622930805.4881794-CDS-H-elongata_contig4897:9332..94041622930805.4881794-CDS-H-elongata_contig4897:9332..9404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4897 9333..9404 -
1691679577.9716089-CDS-H-elongata_contig4897:9332..94041691679577.9716089-CDS-H-elongata_contig4897:9332..9404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4897 9333..9404 -
1622930805.5005345-CDS-H-elongata_contig4897:9759..98311622930805.5005345-CDS-H-elongata_contig4897:9759..9831Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4897 9760..9831 -
1691679577.9837592-CDS-H-elongata_contig4897:9759..98311691679577.9837592-CDS-H-elongata_contig4897:9759..9831Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4897 9760..9831 -
1622930805.5157063-CDS-H-elongata_contig4897:9958..100331622930805.5157063-CDS-H-elongata_contig4897:9958..10033Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4897 9959..10033 -
1691679577.9939148-CDS-H-elongata_contig4897:9958..100331691679577.9939148-CDS-H-elongata_contig4897:9958..10033Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4897 9959..10033 -
1622930805.5351248-CDS-H-elongata_contig4897:10497..106021622930805.5351248-CDS-H-elongata_contig4897:10497..10602Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4897 10498..10602 -
1691679578.0017946-CDS-H-elongata_contig4897:10497..106021691679578.0017946-CDS-H-elongata_contig4897:10497..10602Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4897 10498..10602 -
1622930805.5537152-CDS-H-elongata_contig4897:11077..111691622930805.5537152-CDS-H-elongata_contig4897:11077..11169Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4897 11078..11169 -
1691679578.0126753-CDS-H-elongata_contig4897:11077..111691691679578.0126753-CDS-H-elongata_contig4897:11077..11169Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4897 11078..11169 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4897.12068.1prot_H-elongata_contig4897.12068.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4897 6866..11169 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4897.12068.1

>prot_H-elongata_contig4897.12068.1 ID=prot_H-elongata_contig4897.12068.1|Name=mRNA_H-elongata_contig4897.12068.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=250bp
MCGTEAADPTPCLDSTSSSYRCSYDGSTTALDLTFDSVYCEIDNDQLDYV
SACLDDFGRTNIVEKISLISQKHINNLPPDIFSGLTNAEWMVLSGQDFTE
IPKEVFSGLSSMNNLTIAFTNLETLPKGIFDDLVALETLDLYGNKIYSLA
EGLFEMLVNVKQLWLTGNELTTLNVNAFNDLISLEELYLQHNDGLQCLPE
STATTIRLDSEDIRNGTCTCDEPEGGPPLCADGITCIEATEGYQCWFLW*
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mRNA from alignment at H-elongata_contig4897:6154..11186-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4897.12068.1 ID=mRNA_H-elongata_contig4897.12068.1|Name=mRNA_H-elongata_contig4897.12068.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5033bp|location=Sequence derived from alignment at H-elongata_contig4897:6154..11186- (Himanthalia elongata Himel1 dioecious)
GTGTGGCTCTCGCGGGCATGTGCGGTACTGAGGCGGCGGATCCTACCCCT
TGTCTCGATTCCACGAGCAGCTCTTATAGGTGTTCCTACGATGGATCAAC
CACCGCTCTGTGAGAAAGCTTCAAACCGGGCAATATTTCGATTAGGTCAT
ACGTGTGATGGCTATCCTACTCCTAAGTACGAGAGAGTGTCGCCGTGTGC
TTTGCTAAAAATAGAGCTAGGCGTTTGAAAAACATTACTGCACTCATCTG
ATTCCCTTCAAGTATCATCGGGTGTATGCGAATCCGCACACACTTCAAGG
CATTACAATCAGCAGTATCAATAGTTATATGTTGATCCGGGGATTACGGG
CTGATACGGTTTTATTTGGTGAGACTTGGATCAATAGGACGTGTAGGCTT
GGCCGGAGTAATTCAAGAGTGGACATCGACCACAGGCAATTTAATTCCCT
CCGAACTCTTCCCTGCTGCTTATCTCCGAGCCGACAACGTCTCATCGTGT
AAATAGCCTAATATGCTGCCTTTTTACTGAAGAATATTTCGCTCTTTTCC
CGTATTTTGTTGTTCATTTGTCTAATGCATGCAGTGACCTCACCTTCGAC
AGCGTCTATTGTGAAATCGACAATGACCAGCTAGACTACGTGTCAGCGTG
CTTGGATGACTTTGGGAGGACAAACATCGTCGAAAAGATGTGAGATGTCC
TACAAAAGCATGATTGATTGGCCCTGAAGGCTTGTAGACGCTGGCTTGAT
TCGCAGGAAGCATTAAAGTATGCATTTTCAAACGCGAATCAATTTTGAGG
AAGCCGAGGGAAATTTAACTCGAAATATTGTTGTGGTATTTATTTTGGAG
CTTTTTTATTTACAGGTCGATAATCTGTCTAACGTTTCAGTGCACTTAAG
TTGTGGTGGATGCCGTATTGCCATTCGCGTGTATTTCCGCCCTTATGCAG
CTTGGATGTCCCGTGTATAAACCTTCATAGTTTGAAATACTTAAAAAAAT
GTTCTCTGTTGGCAGCAAAACCAGATGTCTGTAGCTAAAATATTATTAAA
CAATGGCTTGTCTATCATGAATTTAGCCCGCCTCTCTTTCATACAATTAT
AGCCACGTGGTAATTCACGACATGCGAATCCACGCTCTCCGTGCTTTTTG
CAGATCCTTGATCAGCCAGAAGCACATCAACAACCTGCCCCCGGACATCT
TTTCCGGCCTCACCAACGCTGAATGGATGTGAGTCCTGACTAGAGTCAAC
CAACGTTGACCGGATTGATTCAATGCGAAACGTAGCGAGCTTAAGTTTCT
TCCTCACGTGCCTCACGTTCACAAGCCAATTTCAATGCCCAACGCTGACA
TCCAGGGTTCTATCTGGGCAGGACTTCACTGAGATACCAAAGGAAGTCTT
CAGCGGACTGTCAAGCATGAACAATCTGTAAGTATTTAGCAAGCACATAC
ACTCAAGGAATGGAGATGACTGAGAGCATGGACCTCTGTGATCTTTTTTG
TCCAAGGGCCTCCTGAGCCTTAGGACAGCAGAACCACGCGCTTATTGAAG
AACTGGTGTTCAATTAGCGAGGAGACTATTTGGAAGAGAGCCACCCTTGC
CTTTCCCTTTCGATGGTATTTAGAATATTTCAGCCCCACGACTGCACAAT
CTCTTGTATTTACTTCCTCGCGTGTCTCTCGACCCGGAAACCTAACGCCA
CTGAGACTTAGACACTTTTATCCTACGTATTAAAGAATTCATGATGAGAA
CTTTCGCGCTGACAAGGTTTTCGCTTGTGCAGGACGATTGCCTTCACCAA
CCTCGAAACGCTTCCCAAGGGAATCTTCGACGACCTCGTCGCACTCGAAA
CTTTGTGAGTCGGATCGGAGGAAATATTGCTTCTACTCCTCCTGTAGATG
TGTCTTCACAGTAGCTGTATGTATGTATGTATGTATGTATGTATGTATGT
ATGTATGTATGTATGTATACATGTATGTATACATGTATGTATGTATGTAT
GTATGTATGTATGTATGTATGTATGTATGTATGTACGCATGTATGTATGT
ATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTAT
GTATATATGCATGTATGTATGTCTGTATGTGTATGTATGTATGTATGTAT
GTATGTATGGATATGGATATCTTTGGTGAGCCAATGAGAGAGCGAATACC
ATGATTGCCATCGTCAGTTAGATTGAGGCCTCAGAGTGTCAACATATATA
AATCGCGATTTATCATTACTGCACATTAAGCACCCTTTCCTACGCGACTG
TGCGCATCGTGTGCTCTTTAATTTTAACAGGGACCTGTACGGGAACAAAA
TATACTCGCTTGCTGAAGGCTTGTTCGAGATGCTTGTTAACGTTAAACAA
CTGTGAGTAAATCGCTTTATGTCGGAATATGGCAGCGAGTGGATTATGCA
GCGGTCGATATCGACGGCCAATGCGATTGAGCTTGTATATCCAGAGCTAC
ACCCAGCGTAGCGATTTTGGGCCTAACTTATATATCAACATGACGACCTT
ACTAACCGCTGCTTTGCACAGGTGGCTGACTGGCAATGAGCTGACTACCC
TCAACGTGAACGCCTTTAATGACCTGATCTCCTTGGAAGAGCTGTGAGTT
TCGCACTTAGATCGTAACTCAAAGTTGAAATGCTCGTGGGGAAGAAATAT
ATTTTACCGGAGAAAAATGAAAATAATATTTGAAGATGGCAGCTTGAGCG
GCAATGGAGATAACCTTGCTCCCACATGTTTGGCGTCCGAGTAAGTGGAG
ACTAAATGCGAAGTGAGATCAGTCAGTGCCATCCTCGGCGTATTACCGAC
TCTCCGACGCGCTCCAACTCTGTTCAACTTATCAAACGCATCGTACACTT
TCATCGTTACAGGTACCTCCAACACAACGACGGCCTCCAATGTCTTCCTG
AATCGTGAGTTCACCGTGCTAGGGTCCTCGCTAACTGTACGCAGACGTGG
GCCCGGCGGGTAGGGGTGATAAGTTTAGAATTGAACCTGGGACTTTATCA
ACGAAAAAATATTTTCAACTATGATCCGTGCTTATACCACCTCTGCAGCC
AAATTTCTATTTAAGTTCGATCCTCCAGCCTGATAAACGACTGAATATTT
TCTTAAGCGTTACACGGCGGCTTCAAGGTTGACACTGGGCATTCGCAAGC
AAACACGACCTGGATCAAAAACTCATCGAGGAAAATCTTGGTATCTCTTT
TACATTTTTCGATTGATGCCTTTTTCGGTATCCCCAAACTCGCCGCTCAC
AGGACGGCTACCACAATCCGCCTTGACTCCGAAGACATCCGCAATGGCAC
ATGCAGTGAGTGATTCGAGTCTTCTGGTGTCTTGAAACCGACTTTGTGTA
CCATTTTAGACGGCTCGCGCGATTTTCGAGCGCTCTTCGCATTGCGTTCA
AGGTGTTTGTTATTCTTGCCCAGTTTTTGTGGACGAGAACTCTTCCTGCA
ATGAGGCATATTCTATATTTTAAAAGTGCATCTTTGAAATTGCGGTATGA
TGAATCATGGCACAGGAAGAATTTCATAACGGTGGTAGGTGCCCGAGAGG
ACGACGGGACTAAGTCCCTGTAATGAGGCTAAAGCATACAGGGTGTGTGA
TACAATGCTAAACAACGTTTATTTGTGGACTTTTCTCCATAAAATAAAGT
GTATCCCCCTTGAGACCGTTGTAGAGCTAACATGGAAGGCGGTATTTCTA
CATTCGGAGCGTTCATTCACCCTTGGTATGTCTCCAAGGAGACTGGGGTT
CATTCTTTACCCGGAGTTCAATCCTTCTAATTCTTCATATATATTGTTAT
GTGATTTAACTGACGCAGCGTGCGATGAGCCTGAAGGGGGACCACCGCTG
TGTGCTGACGGCATTACCTGTATCGAGGCAACCGAGGGCTACCAATGCTG
TGAGTTGTTCCAAGGAGCAACATGCAGACGGGGAAGGATCGTACCCTTTT
CAGCGTTGAGTTCAATATGGCACTCGGATGCTCCATTAAGTGTAACGAGG
GGCTTTCCCCACCACGTGTATGCATATGTATCTTCATGGTGTTAGACGCG
TCGCCTCTACGAGCTCCAAACAACCCTATACCGATTATGTTAGAAAATCA
TTACCGCCACACATTCAGAAACGATAACACGCTAGGTAGTGTAGCTGTAC
GTTTTATTTCAAACGTACTTTATCCATGTATGATAGCTGAACCAACAATG
CACGCCTCAATGTATCTATTGTCGTCTTTTGCCAATCGCCGTTTCTATAT
TTTACAGGGTTCCTCTGGTGATATATGTACCGTCCGCACGGCCTACGTAT
GACCAGAAGAATTAACCAAACGAGCAACGGGCTGCGACTGAGTCAGAATC
CCGTACGAGCTTAGGTATTCTTCCTGTTTGTGCCGAGTCAAAGATGCATC
GCGTAGATGATGCCTGCTCTTACTCCGGTAAAATATTTTTATTGATGTTT
TTGTGTTCCAGAGTATCATTGTGAGCGGCCGCATACCCAGCGCTCGCTCA
AGGGAACTGGAGGGGGAAACAAATCATATTGCGGCCAGGATAGTGGCTTT
GGACGATCCGGACCTAGCCTCACTTGCCTTAGGTGGCCACTTTGGTTGAT
TATAGTTCCTCCGCCAATTCGAGCTCTCCTCGAAGCAGTCCATAACTGCT
GGATGACGCTCAATATTCAACTCTTAGTATGTATGTGAAATGTTTGGCTA
AATATATGTATATGATAACATCAAGGATCAACTCCAAATTGTTTGGGCAA
CCGTAAGCCCGAAACAGTTGTATTTGAAACGTTGAGCATACCTTTGAACG
CGTGACTGCGGGATTCCAGAAATATGGGCCTCTAATACATCGCTGTTGCA
AACGAAGCACATATCAAACCTCGAACTCCACGCTAACGGGGGCACTCCAA
CTCCACACTACTGCAGTCGGCGGAGAGTCTTTACACCAGGCGTTACTTAA
CCGCTATAATATGCAGAACACCTGCCCACTGGC
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Coding sequence (CDS) from alignment at H-elongata_contig4897:6154..11186-

>mRNA_H-elongata_contig4897.12068.1 ID=mRNA_H-elongata_contig4897.12068.1|Name=mRNA_H-elongata_contig4897.12068.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1500bp|location=Sequence derived from alignment at H-elongata_contig4897:6154..11186- (Himanthalia elongata Himel1 dioecious)
ATGTGCGGTACTGAGGCGGCGGATCCTACCCCTTGTCTCGATTCCACGAG
CAGCTCTTATAGGTGTTCCTACGATGGATCAACCACCGCTCTATGTGCGG
TACTGAGGCGGCGGATCCTACCCCTTGTCTCGATTCCACGAGCAGCTCTT
ATAGGTGTTCCTACGATGGATCAACCACCGCTCTTGACCTCACCTTCGAC
AGCGTCTATTGTGAAATCGACAATGACCAGCTAGACTACGTGTCAGCGTG
CTTGGATGACTTTGGGAGGACAAACATCGTCGAAAAGATTGACCTCACCT
TCGACAGCGTCTATTGTGAAATCGACAATGACCAGCTAGACTACGTGTCA
GCGTGCTTGGATGACTTTGGGAGGACAAACATCGTCGAAAAGATATCCTT
GATCAGCCAGAAGCACATCAACAACCTGCCCCCGGACATCTTTTCCGGCC
TCACCAACGCTGAATGGATATCCTTGATCAGCCAGAAGCACATCAACAAC
CTGCCCCCGGACATCTTTTCCGGCCTCACCAACGCTGAATGGATGGTTCT
ATCTGGGCAGGACTTCACTGAGATACCAAAGGAAGTCTTCAGCGGACTGT
CAAGCATGAACAATCTGGTTCTATCTGGGCAGGACTTCACTGAGATACCA
AAGGAAGTCTTCAGCGGACTGTCAAGCATGAACAATCTGACGATTGCCTT
CACCAACCTCGAAACGCTTCCCAAGGGAATCTTCGACGACCTCGTCGCAC
TCGAAACTTTGACGATTGCCTTCACCAACCTCGAAACGCTTCCCAAGGGA
ATCTTCGACGACCTCGTCGCACTCGAAACTTTGGACCTGTACGGGAACAA
AATATACTCGCTTGCTGAAGGCTTGTTCGAGATGCTTGTTAACGTTAAAC
AACTGGACCTGTACGGGAACAAAATATACTCGCTTGCTGAAGGCTTGTTC
GAGATGCTTGTTAACGTTAAACAACTGTGGCTGACTGGCAATGAGCTGAC
TACCCTCAACGTGAACGCCTTTAATGACCTGATCTCCTTGGAAGAGCTGT
GGCTGACTGGCAATGAGCTGACTACCCTCAACGTGAACGCCTTTAATGAC
CTGATCTCCTTGGAAGAGCTGTACCTCCAACACAACGACGGCCTCCAATG
TCTTCCTGAATCGTACCTCCAACACAACGACGGCCTCCAATGTCTTCCTG
AATCGACGGCTACCACAATCCGCCTTGACTCCGAAGACATCCGCAATGGC
ACATGCAGACGGCTACCACAATCCGCCTTGACTCCGAAGACATCCGCAAT
GGCACATGCACGTGCGATGAGCCTGAAGGGGGACCACCGCTGTGTGCTGA
CGGCATTACCTGTATCGAGGCAACCGAGGGCTACCAATGCTCGTGCGATG
AGCCTGAAGGGGGACCACCGCTGTGTGCTGACGGCATTACCTGTATCGAG
GCAACCGAGGGCTACCAATGCTGGTTCCTCTGGTGAGGTTCCTCTGGTGA
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