prot_H-elongata_contig47746.11909.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig47746.11909.1
Unique Nameprot_H-elongata_contig47746.11909.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length71
Homology
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BLAST of mRNA_H-elongata_contig47746.11909.1 vs. uniprot
Match: D7FT77_ECTSI (Aspartate--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT77_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 9.950e-17
Identity = 44/68 (64.71%), Postives = 48/68 (70.59%), Query Frame = 0 
Query:    4 TSEELAALIEAKGQEIRTLKSDGTPKDALKPHIDELLMLKAKFQTTAGKAYIAPGQEKKNKPSAVVPP 71
            T EELA +IE KG EIR LK   T KD LKPHIDELL LK KFQ+T G  Y+APGQEKK KP+    P
Sbjct:    6 TGEELAVMIEDKGNEIRQLKFAKTSKDDLKPHIDELLALKTKFQSTTGAPYVAPGQEKKTKPAPAATP 73
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BLAST of mRNA_H-elongata_contig47746.11909.1 vs. uniprot
Match: A0A7S3XX04_HETAK (Proline--tRNA ligase n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XX04_HETAK)

HSP 1 Score: 53.5 bits (127), Expect = 1.480e-6
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 0 
Query:    3 STSEELAALIEAKGQEIRTLKSDGTPKDALKPHIDELLMLKAKFQTTAGKAYIAP-GQEKKNKPSA 67
            +++E+L A I   G ++R  K  GTPKD LKP IDEL+ LKA+F+   G+ +  P G +KK KP+A
Sbjct:   77 TSAEDLTAQIGDVGAKLRQAKEAGTPKDELKPLIDELVGLKAQFEEVTGQPFDPPKGDKKKKKPAA 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47746.11909.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FT77_ECTSI9.950e-1764.71Aspartate--tRNA ligase n=2 Tax=Ectocarpus TaxID=28... [more]
A0A7S3XX04_HETAK1.480e-646.97Proline--tRNA ligase n=2 Tax=Heterosigma akashiwo ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000738WHEP-TRS domainSMARTSM00991WHEP_TRS_a_2_a_3_acoord: 8..66
e-value: 9.2E-6
score: 35.1
IPR000738WHEP-TRS domainPFAMPF00458WHEP-TRScoord: 8..57
e-value: 1.1E-11
score: 44.7
IPR000738WHEP-TRS domainPROSITEPS51185WHEP_TRS_2coord: 4..60
score: 9.254
NoneNo IPR availableGENE3D1.10.287.10coord: 1..68
e-value: 1.6E-11
score: 45.9
IPR009068S15/NS1, RNA-bindingSUPERFAMILY47060S15/NS1 RNA-binding domaincoord: 7..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47746contigH-elongata_contig47746:46..258 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47746.11909.1mRNA_H-elongata_contig47746.11909.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig47746 46..258 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig47746.11909.1 ID=prot_H-elongata_contig47746.11909.1|Name=mRNA_H-elongata_contig47746.11909.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
MTSTSEELAALIEAKGQEIRTLKSDGTPKDALKPHIDELLMLKAKFQTTA
GKAYIAPGQEKKNKPSAVVPP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000738WHEP-TRS_dom
IPR009068S15_NS1_RNA-bd