mRNA_H-elongata_contig47746.11909.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47746.11909.1
Unique NamemRNA_H-elongata_contig47746.11909.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig47746.11909.1 vs. uniprot
Match: D7FT77_ECTSI (Aspartate--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT77_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 9.950e-17
Identity = 44/68 (64.71%), Postives = 48/68 (70.59%), Query Frame = 1 
Query:   10 TSEELAALIEAKGQEIRTLKSDGTPKDALKPHIDELLMLKAKFQTTAGKAYIAPGQEKKNKPSAVVPP 213
            T EELA +IE KG EIR LK   T KD LKPHIDELL LK KFQ+T G  Y+APGQEKK KP+    P
Sbjct:    6 TGEELAVMIEDKGNEIRQLKFAKTSKDDLKPHIDELLALKTKFQSTTGAPYVAPGQEKKTKPAPAATP 73
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BLAST of mRNA_H-elongata_contig47746.11909.1 vs. uniprot
Match: A0A7S3XX04_HETAK (Proline--tRNA ligase n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XX04_HETAK)

HSP 1 Score: 53.5 bits (127), Expect = 1.480e-6
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:    7 STSEELAALIEAKGQEIRTLKSDGTPKDALKPHIDELLMLKAKFQTTAGKAYIAP-GQEKKNKPSA 201
            +++E+L A I   G ++R  K  GTPKD LKP IDEL+ LKA+F+   G+ +  P G +KK KP+A
Sbjct:   77 TSAEDLTAQIGDVGAKLRQAKEAGTPKDELKPLIDELVGLKAQFEEVTGQPFDPPKGDKKKKKPAA 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47746.11909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FT77_ECTSI9.950e-1764.71Aspartate--tRNA ligase n=2 Tax=Ectocarpus TaxID=28... [more]
A0A7S3XX04_HETAK1.480e-646.97Proline--tRNA ligase n=2 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47746contigH-elongata_contig47746:46..258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size213
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930788.237381-CDS-H-elongata_contig47746:45..2581622930788.237381-CDS-H-elongata_contig47746:45..258Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47746 46..258 -
1691679570.5488029-CDS-H-elongata_contig47746:45..2581691679570.5488029-CDS-H-elongata_contig47746:45..258Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47746 46..258 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47746.11909.1prot_H-elongata_contig47746.11909.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47746 46..258 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47746.11909.1

>prot_H-elongata_contig47746.11909.1 ID=prot_H-elongata_contig47746.11909.1|Name=mRNA_H-elongata_contig47746.11909.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
MTSTSEELAALIEAKGQEIRTLKSDGTPKDALKPHIDELLMLKAKFQTTA
GKAYIAPGQEKKNKPSAVVPP
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mRNA from alignment at H-elongata_contig47746:46..258-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47746.11909.1 ID=mRNA_H-elongata_contig47746.11909.1|Name=mRNA_H-elongata_contig47746.11909.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig47746:46..258- (Himanthalia elongata Himel1 dioecious)
ATGACTTCCACAAGTGAGGAGCTTGCTGCGCTTATCGAGGCCAAGGGCCA
GGAGATCCGCACTTTGAAATCAGACGGTACCCCAAAGGATGCCCTAAAGC
CTCACATTGATGAGCTGCTGATGCTCAAGGCGAAATTCCAGACCACGGCC
GGCAAGGCATACATTGCTCCCGGGCAGGAGAAGAAGAACAAGCCGTCGGC
GGTGGTCCCTCCT
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Coding sequence (CDS) from alignment at H-elongata_contig47746:46..258-

>mRNA_H-elongata_contig47746.11909.1 ID=mRNA_H-elongata_contig47746.11909.1|Name=mRNA_H-elongata_contig47746.11909.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig47746:46..258- (Himanthalia elongata Himel1 dioecious)
ATGACTTCCACAAGTGAGGAGCTTGCTGCGCTTATCGAGGCCAAGGGCCA
GGAGATCCGCACTTTGAAATCAGACGGTACCCCAAAGGATGCCCTAAAGC
CTCACATTGATGAGCTGCTGATGCTCAAGGCGAAATTCCAGACCACGGCC
GGCAAGGCATACATTGCTCCCGGGCAGGAGAAGAAGAACAAGCCGTCGGC
GGTGGTCCCTCCTATGACTTCCACAAGTGAGGAGCTTGCTGCGCTTATCG
AGGCCAAGGGCCAGGAGATCCGCACTTTGAAATCAGACGGTACCCCAAAG
GATGCCCTAAAGCCTCACATTGATGAGCTGCTGATGCTCAAGGCGAAATT
CCAGACCACGGCCGGCAAGGCATACATTGCTCCCGGGCAGGAGAAGAAGA
ACAAGCCGTCGGCGGTGGTCCCTCCT
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